Wall clock time and date at job start Sat Apr 11 2020 00:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37837 * 120.06410 * 2 1 4 4 C 1.38653 * 120.11873 * 180.29378 * 3 2 1 5 5 F 1.35107 * 119.87972 * 179.69761 * 4 3 2 6 6 C 1.38648 * 120.24268 * 359.67074 * 4 3 2 7 7 C 1.37847 * 120.11704 * 0.04922 * 6 4 3 8 8 C 1.50698 * 120.06081 * 179.97438 * 7 6 4 9 9 C 1.39648 * 120.05786 * 179.70827 * 2 1 3 10 10 C 1.47730 * 120.12045 * 0.02562 * 9 2 1 11 11 O 1.21569 * 119.99635 * 262.45615 * 10 9 2 12 12 N 1.34770 * 120.00217 * 82.45831 * 10 9 2 13 13 C 1.46500 * 119.99925 * 185.16734 * 12 10 9 14 14 H 1.09002 * 109.47237 * 315.34467 * 13 12 10 15 15 C 1.53006 * 109.47161 * 75.34439 * 13 12 10 16 16 C 1.52999 * 109.46984 * 195.34323 * 13 12 10 17 17 C 1.52997 * 109.47004 * 66.75079 * 16 13 12 18 18 H 1.09003 * 109.47293 * 53.95489 * 17 16 13 19 19 C 1.53007 * 109.47161 * 173.95312 * 17 16 13 20 20 N 1.46498 * 109.47260 * 293.95091 * 17 16 13 21 21 C 1.36938 * 120.00251 * 153.20850 * 20 17 16 22 22 H 1.08004 * 119.99698 * 349.13148 * 21 20 17 23 23 C 1.38808 * 120.00107 * 169.12841 * 21 20 17 24 24 N 1.31618 * 119.99910 * 180.48994 * 23 21 20 25 25 Si 1.86798 * 120.00133 * 0.49818 * 23 21 20 26 26 H 1.48499 * 109.47504 * 85.01819 * 25 23 21 27 27 H 1.48501 * 109.47204 * 205.02251 * 25 23 21 28 28 H 1.48505 * 109.47069 * 325.02033 * 25 23 21 29 29 H 1.08999 * 109.47520 * 270.28748 * 1 2 3 30 30 H 1.09005 * 109.46696 * 30.28953 * 1 2 3 31 31 H 1.09002 * 109.46855 * 150.28025 * 1 2 3 32 32 H 1.08004 * 119.94012 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.94470 * 180.02562 * 6 4 3 34 34 H 1.08993 * 109.47133 * 274.91089 * 8 7 6 35 35 H 1.08999 * 109.47098 * 34.90555 * 8 7 6 36 36 H 1.08998 * 109.46767 * 154.90365 * 8 7 6 37 37 H 0.97008 * 119.99877 * 5.16366 * 12 10 9 38 38 H 1.09002 * 109.47023 * 59.99896 * 15 13 12 39 39 H 1.09000 * 109.46792 * 180.02562 * 15 13 12 40 40 H 1.08993 * 109.47020 * 299.99847 * 15 13 12 41 41 H 1.09000 * 109.47518 * 306.74998 * 16 13 12 42 42 H 1.09003 * 109.47273 * 186.75120 * 16 13 12 43 43 H 1.09003 * 109.46882 * 180.02562 * 19 17 16 44 44 H 1.09008 * 109.46512 * 299.99718 * 19 17 16 45 45 H 1.08995 * 109.47145 * 59.99873 * 19 17 16 46 46 H 0.97006 * 119.99890 * 333.48421 * 20 17 16 47 47 H 0.97010 * 119.99962 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1929 0.0000 4 6 3.5840 1.1943 -0.0061 5 9 4.2559 2.3664 -0.0123 6 6 4.2835 -0.0028 -0.0054 7 6 3.6029 -1.2016 0.0004 8 6 4.3645 -2.5020 0.0005 9 6 2.2064 -1.2087 0.0062 10 6 1.4718 -2.4903 0.0121 11 8 1.2890 -3.0813 1.0587 12 7 1.0042 -3.0044 -1.1426 13 6 0.1793 -4.2150 -1.1245 14 1 0.6243 -4.9479 -0.4515 15 6 -1.2288 -3.8654 -0.6387 16 6 0.1012 -4.8000 -2.5361 17 6 1.4832 -5.3041 -2.9564 18 1 1.8620 -5.9958 -2.2040 19 6 1.3761 -6.0234 -4.3026 20 7 2.4001 -4.1683 -3.0813 21 6 3.7453 -4.3514 -2.9023 22 1 4.1146 -5.2831 -2.4997 23 6 4.6343 -3.3396 -3.2381 24 7 5.9279 -3.5192 -3.0751 25 14 3.9945 -1.7230 -3.9213 26 1 3.6189 -0.8254 -2.7995 27 1 5.0531 -1.0775 -4.7386 28 1 2.8029 -1.9809 -4.7691 29 1 -0.3634 0.0052 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8925 -0.5095 32 1 1.6575 2.1283 0.0004 33 1 5.3635 0.0038 -0.0098 34 1 4.6198 -2.7736 -1.0237 35 1 5.2777 -2.3881 0.5846 36 1 3.7468 -3.2846 0.4409 37 1 1.2138 -2.5728 -1.9857 38 1 -1.6739 -3.1325 -1.3116 39 1 -1.8424 -4.7662 -0.6248 40 1 -1.1732 -3.4487 0.3669 41 1 -0.2312 -4.0289 -3.2311 42 1 -0.6067 -5.6288 -2.5473 43 1 2.3607 -6.3829 -4.6018 44 1 0.6939 -6.8685 -4.2096 45 1 0.9973 -5.3317 -5.0550 46 1 2.0539 -3.2858 -3.2869 47 1 6.5491 -2.8119 -3.3095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135174723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:48 Heat of formation + Delta-G solvation = -54.559622 kcal Electronic energy + Delta-G solvation = -29508.153805 eV Core-core repulsion = 25605.359029 eV Total energy + Delta-G solvation = -3902.794776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.79777 -40.23892 -38.40796 -36.87649 -34.41266 -33.49216 -32.49432 -31.53814 -30.56322 -29.13536 -27.39186 -26.71586 -26.44829 -23.44902 -23.30832 -21.08586 -20.79875 -20.52771 -19.70448 -17.62724 -17.39292 -16.70443 -16.68018 -16.18361 -15.50663 -14.95184 -14.68883 -14.46491 -14.09923 -13.66884 -13.56558 -13.46768 -13.28517 -12.98363 -12.90095 -12.79176 -12.75196 -12.64970 -12.40481 -12.19957 -12.10165 -11.86354 -11.76256 -11.35108 -11.18902 -11.10428 -10.86564 -10.82826 -10.71536 -10.51848 -10.44356 -10.06330 -9.67890 -9.51786 -9.04004 -8.64318 -8.52945 -8.34854 -7.31403 -5.86617 -3.22650 1.12769 1.38144 2.98000 3.26318 3.28800 3.39018 3.45373 3.74442 4.29350 4.47665 4.74954 4.83555 4.87974 5.04120 5.17714 5.21870 5.26177 5.38473 5.41536 5.49557 5.54101 5.55574 5.69053 5.71781 5.81165 5.84595 5.96942 5.99306 6.01848 6.09576 6.12602 6.22207 6.23351 6.28834 6.35916 6.42322 6.43458 6.46181 6.73716 6.76569 6.88171 6.94380 6.96655 7.21072 7.87264 7.93674 8.31397 8.58324 9.08933 9.80841 10.01986 11.29907 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010954 B = 0.006915 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.603335 B = 4048.144504 C = 5615.030509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.026 4.026 3 C -0.176 4.176 4 C 0.117 3.883 5 F -0.141 7.141 6 C -0.168 4.168 7 C 0.015 3.985 8 C -0.145 4.145 9 C -0.145 4.145 10 C 0.581 3.419 11 O -0.543 6.543 12 N -0.698 5.698 13 C 0.149 3.851 14 H 0.085 0.915 15 C -0.164 4.164 16 C -0.137 4.137 17 C 0.174 3.826 18 H 0.059 0.941 19 C -0.164 4.164 20 N -0.740 5.740 21 C -0.234 4.234 22 H 0.091 0.909 23 C 0.014 3.986 24 N -0.926 5.926 25 Si 0.849 3.151 26 H -0.270 1.270 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.399 0.601 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.043 0.957 46 H 0.351 0.649 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 4.808 3.753 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.027 4.027 3 C -0.195 4.195 4 C 0.098 3.902 5 F -0.120 7.120 6 C -0.186 4.186 7 C 0.014 3.986 8 C -0.200 4.200 9 C -0.148 4.148 10 C 0.366 3.634 11 O -0.421 6.421 12 N -0.350 5.350 13 C 0.045 3.955 14 H 0.103 0.897 15 C -0.223 4.223 16 C -0.175 4.175 17 C 0.065 3.935 18 H 0.077 0.923 19 C -0.224 4.224 20 N -0.385 5.385 21 C -0.364 4.364 22 H 0.108 0.892 23 C -0.181 4.181 24 N -0.574 5.574 25 Si 0.678 3.322 26 H -0.195 1.195 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.236 0.764 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.184 0.816 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.173 4.312 4.513 13.680 hybrid contribution 0.106 1.843 -1.103 2.151 sum -12.066 6.155 3.410 13.968 Atomic orbital electron populations 1.20890 0.90365 1.03319 1.03047 1.19610 0.96053 0.90975 0.96076 1.20723 0.92044 0.98765 1.07934 1.17802 0.90123 0.81028 1.01225 1.91479 1.80647 1.46047 1.93802 1.20967 1.01110 0.90523 1.06032 1.19943 0.91803 0.96059 0.90820 1.21370 0.98959 0.92051 1.07665 1.19775 0.93700 0.93340 1.07986 1.17909 0.77441 0.84035 0.83986 1.90747 1.58496 1.61147 1.31697 1.46176 1.51956 1.28136 1.08747 1.20888 0.89997 0.87097 0.97538 0.89742 1.22218 0.96512 1.01760 1.01787 1.22250 0.99231 1.00958 0.95073 1.20295 0.88006 0.90099 0.95051 0.92261 1.22393 1.01267 0.99195 0.99578 1.42794 1.04470 1.04741 1.86446 1.19034 0.80498 1.02191 1.34700 0.89156 1.24586 0.95006 0.97650 1.00889 1.69694 1.00306 1.33250 1.54159 0.87149 0.78618 0.86321 0.80153 1.19545 1.21735 1.20346 0.90394 0.90908 0.90946 0.84692 0.84325 0.84834 0.91711 0.91094 0.76388 0.92822 0.91807 0.92047 0.91800 0.90172 0.92288 0.94250 0.93812 0.81552 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.62 36.00 0.35 -1.08 16 2 C -0.03 -0.40 5.91 -104.24 -0.62 -1.02 16 3 C -0.18 -2.58 9.67 -39.57 -0.38 -2.97 16 4 C 0.12 1.92 7.31 -39.28 -0.29 1.64 16 5 F -0.14 -2.23 17.26 2.25 0.04 -2.19 16 6 C -0.17 -2.96 9.68 -39.57 -0.38 -3.34 16 7 C 0.01 0.28 5.58 -104.24 -0.58 -0.31 16 8 C -0.14 -2.94 9.69 36.00 0.35 -2.59 16 9 C -0.14 -2.60 5.63 -104.96 -0.59 -3.19 16 10 C 0.58 10.54 4.09 -12.38 -0.05 10.49 16 11 O -0.54 -11.13 16.12 5.31 0.09 -11.05 16 12 N -0.70 -11.36 3.90 -54.78 -0.21 -11.57 16 13 C 0.15 2.13 2.52 -67.93 -0.17 1.96 16 14 H 0.08 1.37 7.81 -51.93 -0.41 0.96 16 15 C -0.16 -1.94 9.33 37.16 0.35 -1.59 16 16 C -0.14 -1.79 4.40 -26.73 -0.12 -1.91 16 17 C 0.17 2.92 2.88 -67.93 -0.20 2.72 16 18 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 19 C -0.16 -2.59 9.51 37.16 0.35 -2.24 16 20 N -0.74 -15.04 3.59 -53.42 -0.19 -15.23 16 21 C -0.23 -5.78 9.93 -15.06 -0.15 -5.93 16 22 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 23 C 0.01 0.37 3.39 -17.43 -0.06 0.31 16 24 N -0.93 -26.18 13.76 55.49 0.76 -25.41 16 25 Si 0.85 19.96 27.28 -169.99 -4.64 15.32 16 26 H -0.27 -6.13 6.77 56.52 0.38 -5.74 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.30 6.87 56.52 0.39 -5.91 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.07 0.88 6.84 -51.93 -0.36 0.53 16 32 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.14 2.27 8.06 -52.49 -0.42 1.84 16 34 H 0.13 3.10 4.60 -51.93 -0.24 2.86 16 35 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 36 H 0.07 1.49 6.71 -51.93 -0.35 1.14 16 37 H 0.40 6.65 6.10 -40.82 -0.25 6.40 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.82 7.56 -51.93 -0.39 0.42 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.35 7.04 3.92 -40.82 -0.16 6.88 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -28.72 377.24 -7.89 -36.61 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -7.23 Total: 16.88 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.19 Total: -9.04 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.36 Total: -52.22 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.64 Total: 15.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.72 -7.89 -36.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135174723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.949 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds