Wall clock time and date at job start Sat Apr 11 2020 00:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37837 * 120.06410 * 2 1 4 4 C 1.38653 * 120.11873 * 180.29378 * 3 2 1 5 5 F 1.35107 * 119.87972 * 179.69761 * 4 3 2 6 6 C 1.38648 * 120.24268 * 359.67074 * 4 3 2 7 7 C 1.37847 * 120.11704 * 0.04922 * 6 4 3 8 8 C 1.50698 * 120.06081 * 179.97438 * 7 6 4 9 9 C 1.39648 * 120.05786 * 179.70827 * 2 1 3 10 10 C 1.47730 * 120.12045 * 0.02562 * 9 2 1 11 11 O 1.21569 * 119.99635 * 262.45615 * 10 9 2 12 12 N 1.34770 * 120.00217 * 82.45831 * 10 9 2 13 13 C 1.46500 * 119.99925 * 185.16734 * 12 10 9 14 14 H 1.09002 * 109.47237 * 315.34467 * 13 12 10 15 15 C 1.53006 * 109.47161 * 75.34439 * 13 12 10 16 16 C 1.52999 * 109.46984 * 195.34323 * 13 12 10 17 17 C 1.52997 * 109.47004 * 66.75079 * 16 13 12 18 18 H 1.09003 * 109.47293 * 53.95489 * 17 16 13 19 19 C 1.53007 * 109.47161 * 173.95312 * 17 16 13 20 20 N 1.46498 * 109.47260 * 293.95091 * 17 16 13 21 21 C 1.36938 * 120.00251 * 153.20850 * 20 17 16 22 22 H 1.08004 * 119.99698 * 349.13148 * 21 20 17 23 23 C 1.38808 * 120.00107 * 169.12841 * 21 20 17 24 24 N 1.31618 * 119.99910 * 180.48994 * 23 21 20 25 25 Si 1.86798 * 120.00133 * 0.49818 * 23 21 20 26 26 H 1.48499 * 109.47504 * 85.01819 * 25 23 21 27 27 H 1.48501 * 109.47204 * 205.02251 * 25 23 21 28 28 H 1.48505 * 109.47069 * 325.02033 * 25 23 21 29 29 H 1.08999 * 109.47520 * 270.28748 * 1 2 3 30 30 H 1.09005 * 109.46696 * 30.28953 * 1 2 3 31 31 H 1.09002 * 109.46855 * 150.28025 * 1 2 3 32 32 H 1.08004 * 119.94012 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.94470 * 180.02562 * 6 4 3 34 34 H 1.08993 * 109.47133 * 274.91089 * 8 7 6 35 35 H 1.08999 * 109.47098 * 34.90555 * 8 7 6 36 36 H 1.08998 * 109.46767 * 154.90365 * 8 7 6 37 37 H 0.97008 * 119.99877 * 5.16366 * 12 10 9 38 38 H 1.09002 * 109.47023 * 59.99896 * 15 13 12 39 39 H 1.09000 * 109.46792 * 180.02562 * 15 13 12 40 40 H 1.08993 * 109.47020 * 299.99847 * 15 13 12 41 41 H 1.09000 * 109.47518 * 306.74998 * 16 13 12 42 42 H 1.09003 * 109.47273 * 186.75120 * 16 13 12 43 43 H 1.09003 * 109.46882 * 180.02562 * 19 17 16 44 44 H 1.09008 * 109.46512 * 299.99718 * 19 17 16 45 45 H 1.08995 * 109.47145 * 59.99873 * 19 17 16 46 46 H 0.97006 * 119.99890 * 333.48421 * 20 17 16 47 47 H 0.97010 * 119.99962 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1929 0.0000 4 6 3.5840 1.1943 -0.0061 5 9 4.2559 2.3664 -0.0123 6 6 4.2835 -0.0028 -0.0054 7 6 3.6029 -1.2016 0.0004 8 6 4.3645 -2.5020 0.0005 9 6 2.2064 -1.2087 0.0062 10 6 1.4718 -2.4903 0.0121 11 8 1.2890 -3.0813 1.0587 12 7 1.0042 -3.0044 -1.1426 13 6 0.1793 -4.2150 -1.1245 14 1 0.6243 -4.9479 -0.4515 15 6 -1.2288 -3.8654 -0.6387 16 6 0.1012 -4.8000 -2.5361 17 6 1.4832 -5.3041 -2.9564 18 1 1.8620 -5.9958 -2.2040 19 6 1.3761 -6.0234 -4.3026 20 7 2.4001 -4.1683 -3.0813 21 6 3.7453 -4.3514 -2.9023 22 1 4.1146 -5.2831 -2.4997 23 6 4.6343 -3.3396 -3.2381 24 7 5.9279 -3.5192 -3.0751 25 14 3.9945 -1.7230 -3.9213 26 1 3.6189 -0.8254 -2.7995 27 1 5.0531 -1.0775 -4.7386 28 1 2.8029 -1.9809 -4.7691 29 1 -0.3634 0.0052 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8925 -0.5095 32 1 1.6575 2.1283 0.0004 33 1 5.3635 0.0038 -0.0098 34 1 4.6198 -2.7736 -1.0237 35 1 5.2777 -2.3881 0.5846 36 1 3.7468 -3.2846 0.4409 37 1 1.2138 -2.5728 -1.9857 38 1 -1.6739 -3.1325 -1.3116 39 1 -1.8424 -4.7662 -0.6248 40 1 -1.1732 -3.4487 0.3669 41 1 -0.2312 -4.0289 -3.2311 42 1 -0.6067 -5.6288 -2.5473 43 1 2.3607 -6.3829 -4.6018 44 1 0.6939 -6.8685 -4.2096 45 1 0.9973 -5.3317 -5.0550 46 1 2.0539 -3.2858 -3.2869 47 1 6.5491 -2.8119 -3.3095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135174723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:47 Heat of formation + Delta-G solvation = -70.584598 kcal Electronic energy + Delta-G solvation = -29508.848700 eV Core-core repulsion = 25605.359029 eV Total energy + Delta-G solvation = -3903.489671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.05012 -41.57293 -39.69996 -38.31481 -35.92067 -34.76494 -34.15622 -32.97835 -31.94750 -30.64362 -28.62377 -28.00971 -27.59541 -25.26143 -24.62796 -22.32721 -22.07998 -21.91238 -21.09165 -19.50742 -18.70436 -17.98090 -17.95118 -17.49862 -16.76462 -16.57970 -16.17361 -15.91646 -15.51458 -15.01992 -14.86148 -14.82432 -14.51526 -14.34659 -14.25620 -14.17770 -14.13847 -14.03126 -13.91475 -13.41694 -13.27383 -13.03892 -12.86866 -12.74671 -12.66659 -12.55889 -12.36815 -12.32119 -12.13545 -12.07011 -11.83182 -11.61717 -11.42146 -10.93774 -10.83684 -9.99397 -9.81775 -9.70724 -9.13786 -7.92079 -5.23481 -0.17448 0.10289 1.36271 1.38654 1.46231 1.58582 2.17138 2.44638 2.51357 3.04107 3.38917 3.52754 3.57145 3.62726 3.82105 3.87502 3.96989 4.12031 4.21373 4.34235 4.41914 4.46738 4.57464 4.65100 4.65881 4.69096 4.69849 4.79909 4.83801 4.87500 4.90883 4.95284 5.06412 5.09810 5.12954 5.16124 5.21829 5.35321 5.38891 5.41165 5.42503 5.60960 5.67235 5.75465 5.93496 6.29069 6.53034 7.17386 7.22331 7.92550 8.11691 9.27743 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010954 B = 0.006915 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.603335 B = 4048.144504 C = 5615.030509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.023 4.023 3 C -0.162 4.162 4 C 0.113 3.887 5 F -0.138 7.138 6 C -0.183 4.183 7 C -0.010 4.010 8 C -0.135 4.135 9 C -0.163 4.163 10 C 0.582 3.418 11 O -0.575 6.575 12 N -0.692 5.692 13 C 0.144 3.856 14 H 0.057 0.943 15 C -0.154 4.154 16 C -0.122 4.122 17 C 0.166 3.834 18 H 0.038 0.962 19 C -0.156 4.156 20 N -0.740 5.740 21 C -0.208 4.208 22 H 0.051 0.949 23 C -0.031 4.031 24 N -0.971 5.971 25 Si 0.901 3.099 26 H -0.258 1.258 27 H -0.313 1.313 28 H -0.256 1.256 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.174 0.826 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.398 0.602 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.027 0.973 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.356 0.644 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 6.552 2.953 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.024 4.024 3 C -0.180 4.180 4 C 0.094 3.906 5 F -0.116 7.116 6 C -0.202 4.202 7 C -0.011 4.011 8 C -0.191 4.191 9 C -0.167 4.167 10 C 0.368 3.632 11 O -0.456 6.456 12 N -0.343 5.343 13 C 0.040 3.960 14 H 0.075 0.925 15 C -0.212 4.212 16 C -0.160 4.160 17 C 0.058 3.942 18 H 0.056 0.944 19 C -0.216 4.216 20 N -0.385 5.385 21 C -0.340 4.340 22 H 0.069 0.931 23 C -0.223 4.223 24 N -0.622 5.622 25 Si 0.729 3.271 26 H -0.183 1.183 27 H -0.241 1.241 28 H -0.181 1.181 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.192 0.808 33 H 0.157 0.843 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.235 0.765 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.134 0.866 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.190 0.810 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.289 6.029 3.694 17.758 hybrid contribution 1.360 1.208 -0.795 1.985 sum -14.929 7.237 2.900 16.842 Atomic orbital electron populations 1.20999 0.87567 1.04777 1.04140 1.20034 0.97997 0.89959 0.94364 1.21141 0.91266 1.00123 1.05504 1.17908 0.90964 0.80575 1.01198 1.91489 1.80781 1.45599 1.93755 1.21037 1.01461 0.90920 1.06734 1.19815 0.92524 0.95459 0.93272 1.21130 0.99239 0.92928 1.05777 1.19952 0.93370 0.94438 1.08899 1.18000 0.77146 0.84107 0.83956 1.90722 1.59921 1.62091 1.32849 1.46225 1.51645 1.28412 1.08040 1.21063 0.91096 0.85853 0.97993 0.92451 1.22119 0.94756 1.03329 1.00967 1.22179 0.97107 1.02541 0.94214 1.20525 0.89422 0.88881 0.95364 0.94353 1.22262 1.00405 1.00345 0.98540 1.42762 1.03196 1.06232 1.86269 1.18815 0.82593 1.00178 1.32378 0.93064 1.25013 0.94877 1.00388 1.02063 1.69853 1.01743 1.34018 1.56544 0.86277 0.78059 0.83063 0.79686 1.18333 1.24077 1.18106 0.89373 0.87681 0.91221 0.80827 0.84262 0.87642 0.91164 0.92954 0.76483 0.90851 0.89444 0.93850 0.90015 0.86572 0.95420 0.90890 0.92997 0.80952 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 9.62 71.23 0.69 -1.66 16 2 C -0.02 -0.63 5.91 -19.62 -0.12 -0.75 16 3 C -0.16 -4.19 9.67 22.27 0.22 -3.98 16 4 C 0.11 3.48 7.31 22.47 0.16 3.65 16 5 F -0.14 -4.08 17.26 44.97 0.78 -3.30 16 6 C -0.18 -6.45 9.68 22.27 0.22 -6.24 16 7 C -0.01 -0.38 5.58 -19.62 -0.11 -0.49 16 8 C -0.13 -5.79 9.69 71.24 0.69 -5.10 16 9 C -0.16 -5.75 5.63 -20.09 -0.11 -5.87 16 10 C 0.58 21.01 4.09 86.75 0.35 21.36 16 11 O -0.58 -24.01 16.12 -3.93 -0.06 -24.07 16 12 N -0.69 -21.72 3.90 -445.51 -1.74 -23.46 16 13 C 0.14 3.83 2.52 44.99 0.11 3.94 16 14 H 0.06 1.86 7.81 -2.39 -0.02 1.84 16 15 C -0.15 -3.12 9.33 71.98 0.67 -2.45 16 16 C -0.12 -2.79 4.40 30.59 0.13 -2.65 16 17 C 0.17 5.35 2.88 44.99 0.13 5.48 16 18 H 0.04 1.40 8.06 -2.39 -0.02 1.38 16 19 C -0.16 -4.60 9.51 71.98 0.68 -3.91 16 20 N -0.74 -29.82 3.59 -322.93 -1.16 -30.98 16 21 C -0.21 -10.65 9.93 84.03 0.83 -9.82 16 22 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 23 C -0.03 -1.68 3.39 84.86 0.29 -1.39 16 24 N -0.97 -57.62 13.76 21.65 0.30 -57.32 16 25 Si 0.90 41.60 27.28 68.60 1.87 43.47 16 26 H -0.26 -11.35 6.77 99.48 0.67 -10.68 16 27 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 28 H -0.26 -10.81 6.87 99.48 0.68 -10.13 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 1.42 8.09 -2.38 -0.02 1.40 16 31 H 0.07 1.44 6.84 -2.39 -0.02 1.42 16 32 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.11 5.19 4.60 -2.39 -0.01 5.18 16 35 H 0.07 2.79 8.12 -2.39 -0.02 2.77 16 36 H 0.05 2.36 6.71 -2.39 -0.02 2.34 16 37 H 0.40 12.53 6.10 -92.70 -0.57 11.97 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.04 1.06 7.56 -2.39 -0.02 1.04 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.36 13.72 3.92 -92.70 -0.36 13.36 16 47 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -66.93 377.24 4.83 -62.10 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: 0.00 Total: 43.44 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 4.84 Total: -9.88 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -2.60 Total: -111.76 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.06 Total: -24.07 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.87 Total: 43.47 kcal Total: -66.93 4.83 -62.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135174723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.489 kcal (2) G-P(sol) polarization free energy of solvation -66.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds