Wall clock time and date at job start Sat Apr 11 2020 00:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.97574 * 2 1 4 4 C 1.38172 * 120.02408 * 180.30141 * 3 2 1 5 5 C 1.38483 * 119.97522 * 359.41225 * 4 3 2 6 6 F 1.35096 * 120.02661 * 180.30392 * 5 4 3 7 7 C 1.38447 * 119.94815 * 0.28511 * 5 4 3 8 8 C 1.50693 * 120.01449 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47125 * 279.99803 * 8 7 5 10 10 O 1.21282 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99891 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99884 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47090 * 35.00298 * 12 11 9 14 14 C 1.53001 * 109.47003 * 275.00463 * 12 11 9 15 15 C 1.53005 * 109.47325 * 155.00870 * 12 11 9 16 16 C 1.53002 * 109.46435 * 295.00124 * 15 12 11 17 17 H 1.08991 * 109.47439 * 54.99828 * 16 15 12 18 18 C 1.53004 * 109.46856 * 175.00213 * 16 15 12 19 19 N 1.46504 * 109.47036 * 294.99794 * 16 15 12 20 20 C 1.36931 * 120.00157 * 155.00605 * 19 16 15 21 21 H 1.08001 * 120.00130 * 359.97438 * 20 19 16 22 22 C 1.38811 * 120.00288 * 179.97438 * 20 19 16 23 23 N 1.31618 * 120.00091 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47286 * 59.99776 * 24 22 20 26 26 H 1.48493 * 109.47373 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46943 * 299.99946 * 24 22 20 28 28 C 1.38220 * 119.97159 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.47666 * 270.30754 * 1 2 3 30 30 H 1.09006 * 109.46898 * 30.30122 * 1 2 3 31 31 H 1.09001 * 109.47521 * 150.30260 * 1 2 3 32 32 H 1.07998 * 119.98571 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.01574 * 179.69763 * 4 3 2 34 34 H 1.09007 * 109.47081 * 39.99890 * 8 7 5 35 35 H 1.08996 * 109.47453 * 159.99682 * 8 7 5 36 36 H 0.97008 * 120.00183 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.47580 * 59.99959 * 14 12 11 38 38 H 1.09003 * 109.47182 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.47063 * 299.99852 * 14 12 11 40 40 H 1.08992 * 109.47119 * 54.99556 * 15 12 11 41 41 H 1.08996 * 109.47137 * 175.00241 * 15 12 11 42 42 H 1.09000 * 109.47177 * 59.99647 * 18 16 15 43 43 H 1.09005 * 109.47100 * 179.97438 * 18 16 15 44 44 H 1.08998 * 109.46832 * 299.99404 * 18 16 15 45 45 H 0.96999 * 119.99826 * 335.00046 * 19 16 15 46 46 H 0.96997 * 120.00410 * 179.97438 * 23 22 20 47 47 H 1.07994 * 119.98566 * 180.02562 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0063 5 6 4.2725 -0.0001 -0.0003 6 9 5.6235 -0.0001 -0.0002 7 6 3.5797 -1.1987 0.0060 8 6 4.3322 -2.5043 0.0120 9 6 4.7959 -2.8232 -1.3860 10 8 4.5409 -2.0647 -2.2974 11 7 5.4950 -3.9508 -1.6233 12 6 5.9462 -4.2605 -2.9822 13 1 6.2066 -3.3363 -3.4981 14 6 4.8244 -4.9704 -3.7427 15 6 7.1738 -5.1714 -2.9169 16 6 8.3350 -4.4163 -2.2669 17 1 8.0227 -4.0373 -1.2939 18 6 9.5229 -5.3638 -2.0879 19 7 8.7293 -3.2955 -3.1240 20 6 9.3503 -2.2030 -2.5800 21 1 9.5491 -2.1674 -1.5191 22 6 9.7243 -1.1412 -3.3922 23 7 9.4825 -1.1847 -4.6852 24 14 10.5709 0.3494 -2.6500 25 1 11.8397 -0.0724 -2.0040 26 1 10.8639 1.3362 -3.7202 27 1 9.6813 0.9698 -1.6355 28 6 2.1975 -1.1974 0.0069 29 1 -0.3634 0.0055 1.0277 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3634 -0.8927 -0.5091 32 1 1.6572 2.1327 0.0004 33 1 4.1190 2.1346 -0.0112 34 1 5.1962 -2.4227 0.6716 35 1 3.6773 -3.2996 0.3678 36 1 5.6993 -4.5573 -0.8943 37 1 3.9498 -4.3216 -3.7894 38 1 5.1600 -5.2005 -4.7540 39 1 4.5640 -5.8946 -3.2269 40 1 6.9388 -6.0558 -2.3247 41 1 7.4561 -5.4737 -3.9253 42 1 9.8352 -5.7429 -3.0610 43 1 10.3504 -4.8258 -1.6253 44 1 9.2296 -6.1977 -1.4502 45 1 8.5504 -3.3273 -4.0768 46 1 9.7436 -0.4426 -5.2527 47 1 1.6569 -2.1322 0.0122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135974027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:57 Heat of formation + Delta-G solvation = -65.328960 kcal Electronic energy + Delta-G solvation = -27875.597195 eV Core-core repulsion = 23972.335426 eV Total energy + Delta-G solvation = -3903.261769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.62139 -39.84689 -38.87820 -36.76733 -34.38549 -33.36444 -32.16709 -31.97538 -30.66341 -28.54661 -27.77376 -26.55703 -26.25485 -23.55483 -22.79066 -21.81139 -20.67824 -19.96483 -19.64217 -17.45529 -17.24346 -16.75940 -16.60585 -15.89567 -15.24653 -15.08996 -14.82017 -14.47385 -14.07919 -13.92469 -13.76703 -13.65638 -13.54771 -13.39368 -13.17239 -13.01465 -12.67165 -12.33569 -12.12416 -12.01194 -11.93242 -11.68644 -11.63523 -11.54615 -11.45599 -10.99105 -10.95168 -10.74643 -10.54774 -10.36195 -10.18029 -9.84286 -9.55602 -9.52327 -8.92696 -8.79661 -8.62030 -8.39382 -6.84498 -5.65205 -2.92899 1.14987 1.21436 3.03482 3.37312 3.51994 3.56664 3.57867 3.73640 4.39785 4.48729 4.66928 4.69967 4.76676 5.05643 5.08718 5.10293 5.22824 5.30434 5.40894 5.45793 5.47080 5.52983 5.55636 5.67662 5.69141 5.73995 5.87776 5.94543 5.99091 6.06108 6.06878 6.18685 6.19907 6.26451 6.33961 6.40420 6.42805 6.49449 6.62279 6.78827 6.88338 6.91886 6.99960 7.12790 7.79640 7.87888 8.53129 8.64546 9.64584 10.21652 10.55732 11.57587 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011022 B = 0.004324 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.874984 B = 6474.307793 C = 8203.835822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.094 4.094 4 C -0.151 4.151 5 C 0.117 3.883 6 F -0.129 7.129 7 C -0.094 4.094 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.525 6.525 11 N -0.717 5.717 12 C 0.144 3.856 13 H 0.105 0.895 14 C -0.160 4.160 15 C -0.130 4.130 16 C 0.172 3.828 17 H 0.045 0.955 18 C -0.165 4.165 19 N -0.720 5.720 20 C -0.233 4.233 21 H 0.066 0.934 22 C -0.010 4.010 23 N -0.932 5.932 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.083 4.083 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.393 0.607 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.033 0.967 45 H 0.382 0.618 46 H 0.254 0.746 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.614 -5.087 11.691 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.112 4.112 4 C -0.170 4.170 5 C 0.098 3.902 6 F -0.107 7.107 7 C -0.095 4.095 8 C -0.143 4.143 9 C 0.301 3.699 10 O -0.400 6.400 11 N -0.369 5.369 12 C 0.040 3.960 13 H 0.123 0.877 14 C -0.218 4.218 15 C -0.169 4.169 16 C 0.062 3.938 17 H 0.063 0.937 18 C -0.225 4.225 19 N -0.361 5.361 20 C -0.365 4.365 21 H 0.084 0.916 22 C -0.206 4.206 23 N -0.581 5.581 24 Si 0.732 3.268 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.212 1.212 28 C -0.101 4.101 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.226 0.774 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.666 -4.388 11.099 21.320 hybrid contribution 1.022 0.566 0.363 1.223 sum -16.645 -3.822 11.462 20.568 Atomic orbital electron populations 1.20742 0.90860 1.02904 1.02151 1.19855 0.96281 0.92894 1.01352 1.20830 0.92988 0.97887 0.99484 1.21127 0.95023 0.97134 1.03722 1.17562 0.77332 0.94039 1.01305 1.91574 1.28441 1.97312 1.93384 1.19322 0.94055 0.92992 1.03161 1.20603 1.01536 0.95584 0.96595 1.20229 0.78381 0.81107 0.90178 1.90746 1.55526 1.47833 1.45875 1.45931 1.56391 1.23600 1.10935 1.21012 0.92414 1.00384 0.82214 0.87745 1.22175 0.99378 0.99924 1.00334 1.22161 0.95122 0.97426 1.02173 1.20215 0.90852 0.88318 0.94446 0.93666 1.22463 1.01010 0.98753 1.00323 1.42377 1.70770 1.16061 1.06923 1.19099 1.30006 0.94774 0.92597 0.91609 1.24665 1.02015 0.98448 0.95497 1.69633 1.52879 1.32421 1.03144 0.86359 0.79358 0.83208 0.77883 1.21436 1.21753 1.21229 1.20705 0.92104 0.98024 0.99233 0.91267 0.91505 0.91507 0.85326 0.84761 0.87723 0.87889 0.77350 0.92631 0.91831 0.93222 0.92126 0.90721 0.93569 0.92932 0.94764 0.78382 0.93618 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.10 -1.12 5.88 -104.62 -0.62 -1.74 16 3 C -0.09 -1.06 9.70 -39.59 -0.38 -1.44 16 4 C -0.15 -2.07 10.03 -39.52 -0.40 -2.47 16 5 C 0.12 1.89 7.13 -39.41 -0.28 1.61 16 6 F -0.13 -2.47 16.66 2.25 0.04 -2.44 16 7 C -0.09 -1.33 4.43 -104.56 -0.46 -1.79 16 8 C -0.10 -1.31 5.56 -29.04 -0.16 -1.47 16 9 C 0.52 8.68 7.78 -10.98 -0.09 8.59 16 10 O -0.52 -11.44 15.61 5.56 0.09 -11.35 16 11 N -0.72 -10.60 4.45 -53.80 -0.24 -10.84 16 12 C 0.14 2.39 2.52 -67.93 -0.17 2.22 16 13 H 0.10 2.32 7.05 -51.93 -0.37 1.95 16 14 C -0.16 -2.25 9.48 37.16 0.35 -1.89 16 15 C -0.13 -2.02 4.29 -26.73 -0.11 -2.14 16 16 C 0.17 3.32 2.84 -67.93 -0.19 3.13 16 17 H 0.05 0.90 7.56 -51.93 -0.39 0.50 16 18 C -0.17 -2.94 9.49 37.16 0.35 -2.59 16 19 N -0.72 -18.13 4.49 -53.42 -0.24 -18.37 16 20 C -0.23 -6.67 9.93 -15.06 -0.15 -6.82 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -29.21 13.06 55.49 0.72 -28.48 16 24 Si 0.90 23.62 29.55 -169.99 -5.02 18.60 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 C -0.08 -0.97 9.32 -39.59 -0.37 -1.34 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.10 1.27 7.95 -51.92 -0.41 0.85 16 35 H 0.10 0.90 8.00 -51.93 -0.42 0.48 16 36 H 0.39 4.48 8.60 -40.82 -0.35 4.13 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.38 10.34 7.80 -40.82 -0.32 10.02 16 46 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.13 1.17 8.04 -52.49 -0.42 0.75 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -35.72 395.73 -8.82 -44.54 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.71 Total: 11.40 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.41 Total: -9.02 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.25 Total: -57.70 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.72 -8.82 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135974027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.789 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds