Wall clock time and date at job start Sat Apr 11 2020 00:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.97574 * 2 1 4 4 C 1.38172 * 120.02408 * 180.30141 * 3 2 1 5 5 C 1.38483 * 119.97522 * 359.41225 * 4 3 2 6 6 F 1.35096 * 120.02661 * 180.30392 * 5 4 3 7 7 C 1.38447 * 119.94815 * 0.28511 * 5 4 3 8 8 C 1.50693 * 120.01449 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47125 * 279.99803 * 8 7 5 10 10 O 1.21282 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99891 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99884 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47090 * 35.00298 * 12 11 9 14 14 C 1.53001 * 109.47003 * 275.00463 * 12 11 9 15 15 C 1.53005 * 109.47325 * 155.00870 * 12 11 9 16 16 C 1.53002 * 109.46435 * 295.00124 * 15 12 11 17 17 H 1.08991 * 109.47439 * 54.99828 * 16 15 12 18 18 C 1.53004 * 109.46856 * 175.00213 * 16 15 12 19 19 N 1.46504 * 109.47036 * 294.99794 * 16 15 12 20 20 C 1.36931 * 120.00157 * 155.00605 * 19 16 15 21 21 H 1.08001 * 120.00130 * 359.97438 * 20 19 16 22 22 C 1.38811 * 120.00288 * 179.97438 * 20 19 16 23 23 N 1.31618 * 120.00091 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47286 * 59.99776 * 24 22 20 26 26 H 1.48493 * 109.47373 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46943 * 299.99946 * 24 22 20 28 28 C 1.38220 * 119.97159 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.47666 * 270.30754 * 1 2 3 30 30 H 1.09006 * 109.46898 * 30.30122 * 1 2 3 31 31 H 1.09001 * 109.47521 * 150.30260 * 1 2 3 32 32 H 1.07998 * 119.98571 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.01574 * 179.69763 * 4 3 2 34 34 H 1.09007 * 109.47081 * 39.99890 * 8 7 5 35 35 H 1.08996 * 109.47453 * 159.99682 * 8 7 5 36 36 H 0.97008 * 120.00183 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.47580 * 59.99959 * 14 12 11 38 38 H 1.09003 * 109.47182 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.47063 * 299.99852 * 14 12 11 40 40 H 1.08992 * 109.47119 * 54.99556 * 15 12 11 41 41 H 1.08996 * 109.47137 * 175.00241 * 15 12 11 42 42 H 1.09000 * 109.47177 * 59.99647 * 18 16 15 43 43 H 1.09005 * 109.47100 * 179.97438 * 18 16 15 44 44 H 1.08998 * 109.46832 * 299.99404 * 18 16 15 45 45 H 0.96999 * 119.99826 * 335.00046 * 19 16 15 46 46 H 0.96997 * 120.00410 * 179.97438 * 23 22 20 47 47 H 1.07994 * 119.98566 * 180.02562 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0063 5 6 4.2725 -0.0001 -0.0003 6 9 5.6235 -0.0001 -0.0002 7 6 3.5797 -1.1987 0.0060 8 6 4.3322 -2.5043 0.0120 9 6 4.7959 -2.8232 -1.3860 10 8 4.5409 -2.0647 -2.2974 11 7 5.4950 -3.9508 -1.6233 12 6 5.9462 -4.2605 -2.9822 13 1 6.2066 -3.3363 -3.4981 14 6 4.8244 -4.9704 -3.7427 15 6 7.1738 -5.1714 -2.9169 16 6 8.3350 -4.4163 -2.2669 17 1 8.0227 -4.0373 -1.2939 18 6 9.5229 -5.3638 -2.0879 19 7 8.7293 -3.2955 -3.1240 20 6 9.3503 -2.2030 -2.5800 21 1 9.5491 -2.1674 -1.5191 22 6 9.7243 -1.1412 -3.3922 23 7 9.4825 -1.1847 -4.6852 24 14 10.5709 0.3494 -2.6500 25 1 11.8397 -0.0724 -2.0040 26 1 10.8639 1.3362 -3.7202 27 1 9.6813 0.9698 -1.6355 28 6 2.1975 -1.1974 0.0069 29 1 -0.3634 0.0055 1.0277 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3634 -0.8927 -0.5091 32 1 1.6572 2.1327 0.0004 33 1 4.1190 2.1346 -0.0112 34 1 5.1962 -2.4227 0.6716 35 1 3.6773 -3.2996 0.3678 36 1 5.6993 -4.5573 -0.8943 37 1 3.9498 -4.3216 -3.7894 38 1 5.1600 -5.2005 -4.7540 39 1 4.5640 -5.8946 -3.2269 40 1 6.9388 -6.0558 -2.3247 41 1 7.4561 -5.4737 -3.9253 42 1 9.8352 -5.7429 -3.0610 43 1 10.3504 -4.8258 -1.6253 44 1 9.2296 -6.1977 -1.4502 45 1 8.5504 -3.3273 -4.0768 46 1 9.7436 -0.4426 -5.2527 47 1 1.6569 -2.1322 0.0122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135974027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:56 Heat of formation + Delta-G solvation = -88.513852 kcal Electronic energy + Delta-G solvation = -27876.602567 eV Core-core repulsion = 23972.335426 eV Total energy + Delta-G solvation = -3904.267142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.91334 -41.05030 -39.94580 -38.28837 -36.04277 -34.39068 -33.99164 -32.98552 -32.01130 -30.44264 -28.74997 -27.58853 -27.37453 -25.67975 -23.82405 -22.94803 -21.95255 -21.17575 -21.15295 -19.30657 -18.55357 -18.10137 -17.68439 -17.21900 -16.65706 -16.51898 -16.15463 -15.84936 -15.64263 -15.44323 -15.02065 -14.81510 -14.58051 -14.45031 -14.40335 -14.27506 -14.11385 -13.62896 -13.41123 -13.28210 -13.09720 -12.94155 -12.80571 -12.78427 -12.67005 -12.52623 -12.38124 -12.26973 -12.22949 -11.93066 -11.81712 -11.56550 -11.42216 -10.93898 -10.87280 -9.94945 -9.89946 -9.39158 -8.95993 -7.94114 -5.18824 0.15860 0.24776 1.37818 1.43010 1.46877 1.75223 2.28040 2.53974 2.68879 3.38124 3.40518 3.51450 3.74940 3.82168 3.92314 3.97700 4.06939 4.17720 4.24563 4.29667 4.41484 4.45657 4.52435 4.55562 4.68286 4.71464 4.79677 4.83731 4.90689 4.94839 4.96750 5.01656 5.04663 5.09954 5.20512 5.25030 5.30188 5.32660 5.35681 5.43619 5.50535 5.55605 5.63146 5.70521 5.97281 6.29460 6.69353 7.35169 7.42798 8.16033 8.34948 9.29629 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011022 B = 0.004324 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.874984 B = 6474.307793 C = 8203.835822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.096 4.096 4 C -0.166 4.166 5 C 0.065 3.935 6 F -0.161 7.161 7 C -0.108 4.108 8 C -0.096 4.096 9 C 0.508 3.492 10 O -0.585 6.585 11 N -0.705 5.705 12 C 0.146 3.854 13 H 0.039 0.961 14 C -0.148 4.148 15 C -0.117 4.117 16 C 0.163 3.837 17 H 0.041 0.959 18 C -0.156 4.156 19 N -0.731 5.731 20 C -0.225 4.225 21 H 0.067 0.933 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.957 3.043 25 H -0.272 1.272 26 H -0.295 1.295 27 H -0.290 1.290 28 C -0.086 4.086 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.152 0.848 36 H 0.413 0.587 37 H 0.036 0.964 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.028 0.972 44 H 0.078 0.922 45 H 0.369 0.631 46 H 0.247 0.753 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.872 -7.440 13.764 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.113 4.113 4 C -0.185 4.185 5 C 0.046 3.954 6 F -0.140 7.140 7 C -0.109 4.109 8 C -0.135 4.135 9 C 0.295 3.705 10 O -0.464 6.464 11 N -0.357 5.357 12 C 0.041 3.959 13 H 0.058 0.942 14 C -0.206 4.206 15 C -0.155 4.155 16 C 0.055 3.945 17 H 0.059 0.941 18 C -0.215 4.215 19 N -0.371 5.371 20 C -0.358 4.358 21 H 0.085 0.915 22 C -0.268 4.268 23 N -0.620 5.620 24 Si 0.787 3.213 25 H -0.198 1.198 26 H -0.221 1.221 27 H -0.218 1.218 28 C -0.104 4.104 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.176 0.824 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.169 0.831 36 H 0.250 0.750 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.201 0.799 46 H 0.056 0.944 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -19.911 -6.817 13.249 24.868 hybrid contribution 1.616 1.246 -0.224 2.052 sum -18.295 -5.571 13.025 23.139 Atomic orbital electron populations 1.20828 0.87982 1.03934 1.03696 1.20371 0.98322 0.92309 0.98897 1.21222 0.91976 0.99706 0.98434 1.21357 0.96389 0.96619 1.04134 1.18138 0.76365 0.96128 1.04744 1.91475 1.30819 1.97545 1.94116 1.19601 0.95271 0.92729 1.03290 1.20664 1.02513 0.96607 0.93715 1.21001 0.77687 0.80593 0.91243 1.90719 1.57926 1.49701 1.48071 1.45821 1.55327 1.23553 1.10980 1.20795 0.94146 0.98031 0.82927 0.94241 1.22055 0.97381 1.00608 1.00600 1.22069 0.92654 0.98063 1.02695 1.20538 0.92991 0.87397 0.93591 0.94050 1.22304 0.99081 0.99281 1.00867 1.42586 1.70562 1.17059 1.06939 1.19445 1.28211 0.95552 0.92573 0.91484 1.25388 1.04078 1.01329 0.96017 1.69784 1.55018 1.32925 1.04280 0.85439 0.78804 0.80159 0.76858 1.19799 1.22085 1.21751 1.21122 0.91190 0.99835 0.98267 0.89278 0.90498 0.90538 0.82379 0.84600 0.87442 0.83063 0.74960 0.94450 0.91547 0.89588 0.87228 0.90776 0.93932 0.95322 0.90290 0.79918 0.94412 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.24 0.71 -0.52 16 2 C -0.10 -1.92 5.88 -19.86 -0.12 -2.04 16 3 C -0.10 -2.06 9.70 22.26 0.22 -1.84 16 4 C -0.17 -4.73 10.03 22.31 0.22 -4.51 16 5 C 0.07 2.22 7.13 22.38 0.16 2.38 16 6 F -0.16 -6.68 16.66 44.97 0.75 -5.93 16 7 C -0.11 -3.03 4.43 -19.82 -0.09 -3.12 16 8 C -0.10 -2.33 5.56 29.10 0.16 -2.17 16 9 C 0.51 17.16 7.78 87.66 0.68 17.84 16 10 O -0.58 -26.77 15.61 -3.04 -0.05 -26.81 16 11 N -0.70 -20.02 4.45 -442.53 -1.97 -21.99 16 12 C 0.15 4.79 2.52 44.99 0.11 4.91 16 13 H 0.04 1.85 7.05 -2.39 -0.02 1.83 16 14 C -0.15 -3.94 9.48 71.98 0.68 -3.26 16 15 C -0.12 -3.36 4.29 30.60 0.13 -3.23 16 16 C 0.16 6.14 2.84 44.99 0.13 6.26 16 17 H 0.04 1.59 7.56 -2.39 -0.02 1.58 16 18 C -0.16 -5.20 9.49 71.98 0.68 -4.51 16 19 N -0.73 -37.79 4.49 -322.94 -1.45 -39.24 16 20 C -0.23 -13.24 9.93 84.03 0.83 -12.40 16 21 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 22 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 23 N -0.97 -63.28 13.06 21.65 0.28 -62.99 16 24 Si 0.96 50.24 29.55 68.60 2.03 52.27 16 25 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 27 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 28 C -0.09 -1.86 9.32 22.26 0.21 -1.65 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.76 8.09 -2.38 -0.02 0.74 16 31 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 32 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.11 2.55 7.95 -2.38 -0.02 2.53 16 35 H 0.15 2.09 8.00 -2.39 -0.02 2.07 16 36 H 0.41 8.20 8.60 -92.70 -0.80 7.40 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 45 H 0.37 20.82 7.80 -92.71 -0.72 20.09 16 46 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 47 H 0.16 2.33 8.04 -2.91 -0.02 2.30 16 Total: -1.00 -85.22 395.73 4.24 -80.98 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.55 Total: 35.82 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 5.20 Total: -12.09 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -3.14 Total: -124.22 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.75 Total: -5.93 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.03 Total: 52.27 kcal Total: -85.22 4.24 -80.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135974027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.533 kcal (2) G-P(sol) polarization free energy of solvation -85.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds