Wall clock time and date at job start Sat Apr 11 2020 00:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35461 * 117.00105 * 2 1 4 4 N 1.32316 * 119.15996 * 0.02562 * 3 2 1 5 5 C 1.32454 * 120.90314 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.24444 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.76473 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47235 * 260.00246 * 7 6 5 9 9 C 1.46958 * 110.99836 * 293.80020 * 8 7 6 10 10 C 1.53050 * 109.36665 * 176.81236 * 9 8 7 11 11 N 1.46957 * 109.36532 * 58.39603 * 10 9 8 12 12 C 1.46899 * 111.00125 * 176.81124 * 11 10 9 13 13 C 1.50703 * 109.47478 * 293.80503 * 12 11 10 14 14 H 1.08004 * 119.99682 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00340 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99712 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47436 * 89.99721 * 17 15 13 19 19 H 1.48502 * 109.47040 * 209.99731 * 17 15 13 20 20 H 1.48500 * 109.47188 * 329.99454 * 17 15 13 21 21 C 1.46958 * 110.88308 * 300.68438 * 11 10 9 22 22 C 1.46955 * 111.00296 * 170.00093 * 8 7 6 23 23 C 1.39382 * 118.47172 * 0.02562 * 6 5 4 24 24 O 1.35508 * 120.47699 * 179.97438 * 23 6 5 25 25 C 1.42903 * 117.00086 * 180.02562 * 24 23 6 26 26 N 1.32280 * 119.16728 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46823 * 60.00311 * 1 2 3 28 28 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47233 * 299.99907 * 1 2 3 30 30 H 1.08000 * 120.38327 * 179.72718 * 5 4 3 31 31 H 1.09002 * 109.47199 * 19.99810 * 7 6 5 32 32 H 1.08998 * 109.47015 * 140.00025 * 7 6 5 33 33 H 1.09005 * 109.48948 * 296.78037 * 9 8 7 34 34 H 1.08999 * 109.49362 * 56.84435 * 9 8 7 35 35 H 1.09000 * 109.48825 * 298.43462 * 10 9 8 36 36 H 1.08993 * 109.49243 * 178.36782 * 10 9 8 37 37 H 1.09002 * 109.46714 * 53.80548 * 12 11 10 38 38 H 1.09006 * 109.47190 * 173.80030 * 12 11 10 39 39 H 0.96995 * 120.00100 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.48565 * 299.34839 * 21 11 10 41 41 H 1.08997 * 109.48873 * 179.28247 * 21 11 10 42 42 H 1.09002 * 109.48596 * 303.15390 * 22 8 7 43 43 H 1.09000 * 109.48707 * 63.21846 * 22 8 7 44 44 H 1.09001 * 109.46705 * 300.00217 * 25 24 23 45 45 H 1.08996 * 109.47082 * 59.99728 * 25 24 23 46 46 H 1.08996 * 109.47256 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3072 2.3060 0.0005 5 6 1.8723 3.5039 0.0010 6 6 3.2513 3.6000 0.0016 7 6 3.9303 4.9454 0.0016 8 7 4.3661 5.2740 -1.3622 9 6 5.4195 4.3544 -1.8144 10 6 5.7889 4.6791 -3.2637 11 7 6.2396 6.0752 -3.3506 12 6 6.6755 6.4037 -4.7144 13 6 7.9112 5.6098 -5.0519 14 1 8.3305 4.9288 -4.3259 15 6 8.5063 5.7527 -6.2873 16 7 7.9955 6.5814 -7.1714 17 14 10.0375 4.7680 -6.7058 18 1 9.6423 3.4760 -7.3218 19 1 10.8744 5.5367 -7.6619 20 1 10.8134 4.5086 -5.4664 21 6 5.1862 6.9948 -2.8984 22 6 4.8169 6.6700 -1.4491 23 6 3.9994 2.4239 0.0010 24 8 5.3536 2.4708 0.0010 25 6 6.0461 1.2207 -0.0002 26 7 3.3658 1.2570 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.2628 4.3954 -0.0030 31 1 3.2317 5.7050 0.3526 32 1 4.7965 4.9152 0.6625 33 1 6.2989 4.4688 -1.1805 34 1 5.0574 3.3281 -1.7526 35 1 4.9164 4.5383 -3.9016 36 1 6.5902 4.0172 -3.5918 37 1 5.8813 6.1568 -5.4190 38 1 6.8993 7.4687 -4.7777 39 1 8.4140 6.6817 -8.0407 40 1 4.3069 6.8803 -3.5323 41 1 5.5483 8.0210 -2.9602 42 1 4.0155 7.3320 -1.1210 43 1 5.6894 6.8108 -0.8112 44 1 5.7726 0.6531 0.8893 45 1 5.7725 0.6547 -0.8906 46 1 7.1210 1.4008 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139231120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:17 Heat of formation + Delta-G solvation = 7.408591 kcal Electronic energy + Delta-G solvation = -28019.284316 eV Core-core repulsion = 24139.096645 eV Total energy + Delta-G solvation = -3880.187671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68870 -39.53595 -38.51428 -37.91131 -35.35244 -33.54361 -32.72502 -31.67589 -30.33961 -28.55318 -27.76874 -27.58094 -25.89344 -24.21921 -23.91585 -23.05832 -22.05974 -21.22819 -19.43544 -19.18265 -18.58161 -17.06738 -17.02426 -16.29740 -16.18968 -15.52341 -15.40859 -15.20200 -14.61320 -14.51595 -14.26410 -14.10540 -13.98428 -13.85286 -13.65458 -13.20616 -13.07879 -12.33566 -12.22906 -12.06604 -11.97146 -11.85814 -11.62791 -11.50605 -11.18907 -11.08571 -10.81058 -10.66754 -10.62031 -10.37944 -10.26415 -10.14740 -9.68029 -9.53982 -9.15141 -8.86123 -8.42078 -8.07464 -7.18523 -6.00681 -4.01872 0.81235 0.94022 2.18403 2.84617 3.32613 3.38689 3.42870 3.49518 3.83523 4.23897 4.42247 4.44025 4.56782 4.71032 4.90960 4.97124 4.99177 5.02916 5.14138 5.17196 5.26311 5.34904 5.39536 5.45369 5.50651 5.64065 5.70049 5.77024 5.83835 5.90410 6.02661 6.14926 6.26798 6.47420 6.48861 6.65612 6.70074 6.74386 6.99354 7.22691 7.26051 7.38517 7.42400 7.82715 7.83668 8.12340 8.24594 8.58831 9.05752 9.62207 11.10292 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.003081 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.797658 B = 9084.845902 C = 9759.264458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.292 6.292 3 C 0.531 3.469 4 N -0.588 5.588 5 C 0.222 3.778 6 C -0.229 4.229 7 C 0.116 3.884 8 N -0.537 5.537 9 C 0.061 3.939 10 C 0.068 3.932 11 N -0.538 5.538 12 C 0.194 3.806 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.057 3.943 22 C 0.062 3.938 23 C 0.406 3.594 24 O -0.284 6.284 25 C 0.032 3.968 26 N -0.580 5.580 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.179 0.821 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.084 0.916 37 H -0.009 1.009 38 H 0.030 0.970 39 H 0.261 0.739 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.694 -8.402 18.225 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.193 6.193 3 C 0.228 3.772 4 N -0.321 5.321 5 C 0.060 3.940 6 C -0.236 4.236 7 C -0.013 4.013 8 N -0.262 5.262 9 C -0.066 4.066 10 C -0.061 4.061 11 N -0.263 5.263 12 C 0.069 3.931 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.072 4.072 22 C -0.066 4.066 23 C 0.219 3.781 24 O -0.187 6.187 25 C -0.062 4.062 26 N -0.322 5.322 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.196 0.804 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.102 0.898 37 H 0.008 0.992 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.800 -9.301 18.031 24.537 hybrid contribution 1.050 0.037 -0.486 1.157 sum -12.751 -9.264 17.545 23.584 Atomic orbital electron populations 1.22994 0.75463 1.03450 1.03029 1.86064 1.23491 1.22805 1.86945 1.20132 0.84614 0.84962 0.87508 1.68122 1.40662 0.98848 1.24503 1.22668 0.90769 0.94334 0.86256 1.20538 0.94729 0.95314 1.12996 1.20612 0.98507 0.91376 0.90799 1.62281 1.39135 1.03694 1.21085 1.22398 0.92128 0.95410 0.96679 1.22003 0.98560 0.91899 0.93628 1.62282 1.34153 1.01278 1.28619 1.19696 0.94906 0.97031 0.81512 1.21158 1.10361 1.23991 0.98943 0.91958 1.24987 0.97663 0.95655 0.96331 1.69956 1.40673 1.36687 1.06549 0.86518 0.82937 0.79868 0.78223 1.20765 1.21264 1.19780 1.22055 0.93923 0.97374 0.93874 1.22156 0.98298 0.88340 0.97800 1.19543 0.84902 0.87728 0.85937 1.86493 1.12887 1.33580 1.85771 1.23025 0.96445 0.83876 1.02892 1.66993 1.09581 1.28867 1.26741 0.91694 0.87957 0.91830 0.80384 0.89719 0.93342 0.93880 0.91168 0.95735 0.89820 0.99165 0.95236 0.92954 0.95221 0.91006 0.91113 0.94171 0.92014 0.91579 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 10.36 101.05 1.05 1.40 16 2 O -0.29 -3.50 10.55 -18.07 -0.19 -3.69 16 3 C 0.53 7.07 8.49 -91.29 -0.77 6.29 16 4 N -0.59 -7.05 9.22 -14.80 -0.14 -7.19 16 5 C 0.22 2.36 10.95 -17.29 -0.19 2.17 16 6 C -0.23 -2.76 5.19 -104.20 -0.54 -3.30 16 7 C 0.12 1.34 5.02 -4.98 -0.02 1.32 16 8 N -0.54 -7.92 4.70 -235.91 -1.11 -9.03 16 9 C 0.06 1.03 4.19 -3.77 -0.02 1.01 16 10 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 11 N -0.54 -11.90 4.70 -235.91 -1.11 -13.01 16 12 C 0.19 5.14 4.72 -4.98 -0.02 5.12 16 13 C -0.51 -14.36 8.47 -34.44 -0.29 -14.65 16 14 H 0.06 1.75 7.13 -52.48 -0.37 1.37 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.06 1.04 5.61 -3.77 -0.02 1.02 16 22 C 0.06 0.91 5.61 -3.77 -0.02 0.89 16 23 C 0.41 5.43 6.27 -16.71 -0.10 5.33 16 24 O -0.28 -3.65 6.84 -18.22 -0.12 -3.77 16 25 C 0.03 0.33 10.41 101.05 1.05 1.38 16 26 N -0.58 -8.15 9.41 -14.79 -0.14 -8.29 16 27 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 32 H 0.05 0.58 7.91 -51.93 -0.41 0.17 16 33 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 34 H 0.07 1.15 4.69 -51.93 -0.24 0.91 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.83 6.79 -51.93 -0.35 1.48 16 37 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 38 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 42 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 45 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -33.18 369.92 -8.78 -41.97 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.24 Total: -3.89 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -0.03 Total: 10.82 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -1.76 Total: -63.79 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.32 Total: -7.46 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.18 -8.78 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139231120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.374 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds