Wall clock time and date at job start Sat Apr 11 2020 00:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35461 * 117.00105 * 2 1 4 4 N 1.32316 * 119.15996 * 0.02562 * 3 2 1 5 5 C 1.32454 * 120.90314 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.24444 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.76473 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47235 * 260.00246 * 7 6 5 9 9 C 1.46958 * 110.99836 * 293.80020 * 8 7 6 10 10 C 1.53050 * 109.36665 * 176.81236 * 9 8 7 11 11 N 1.46957 * 109.36532 * 58.39603 * 10 9 8 12 12 C 1.46899 * 111.00125 * 176.81124 * 11 10 9 13 13 C 1.50703 * 109.47478 * 293.80503 * 12 11 10 14 14 H 1.08004 * 119.99682 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00340 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99712 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47436 * 89.99721 * 17 15 13 19 19 H 1.48502 * 109.47040 * 209.99731 * 17 15 13 20 20 H 1.48500 * 109.47188 * 329.99454 * 17 15 13 21 21 C 1.46958 * 110.88308 * 300.68438 * 11 10 9 22 22 C 1.46955 * 111.00296 * 170.00093 * 8 7 6 23 23 C 1.39382 * 118.47172 * 0.02562 * 6 5 4 24 24 O 1.35508 * 120.47699 * 179.97438 * 23 6 5 25 25 C 1.42903 * 117.00086 * 180.02562 * 24 23 6 26 26 N 1.32280 * 119.16728 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46823 * 60.00311 * 1 2 3 28 28 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47233 * 299.99907 * 1 2 3 30 30 H 1.08000 * 120.38327 * 179.72718 * 5 4 3 31 31 H 1.09002 * 109.47199 * 19.99810 * 7 6 5 32 32 H 1.08998 * 109.47015 * 140.00025 * 7 6 5 33 33 H 1.09005 * 109.48948 * 296.78037 * 9 8 7 34 34 H 1.08999 * 109.49362 * 56.84435 * 9 8 7 35 35 H 1.09000 * 109.48825 * 298.43462 * 10 9 8 36 36 H 1.08993 * 109.49243 * 178.36782 * 10 9 8 37 37 H 1.09002 * 109.46714 * 53.80548 * 12 11 10 38 38 H 1.09006 * 109.47190 * 173.80030 * 12 11 10 39 39 H 0.96995 * 120.00100 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.48565 * 299.34839 * 21 11 10 41 41 H 1.08997 * 109.48873 * 179.28247 * 21 11 10 42 42 H 1.09002 * 109.48596 * 303.15390 * 22 8 7 43 43 H 1.09000 * 109.48707 * 63.21846 * 22 8 7 44 44 H 1.09001 * 109.46705 * 300.00217 * 25 24 23 45 45 H 1.08996 * 109.47082 * 59.99728 * 25 24 23 46 46 H 1.08996 * 109.47256 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3072 2.3060 0.0005 5 6 1.8723 3.5039 0.0010 6 6 3.2513 3.6000 0.0016 7 6 3.9303 4.9454 0.0016 8 7 4.3661 5.2740 -1.3622 9 6 5.4195 4.3544 -1.8144 10 6 5.7889 4.6791 -3.2637 11 7 6.2396 6.0752 -3.3506 12 6 6.6755 6.4037 -4.7144 13 6 7.9112 5.6098 -5.0519 14 1 8.3305 4.9288 -4.3259 15 6 8.5063 5.7527 -6.2873 16 7 7.9955 6.5814 -7.1714 17 14 10.0375 4.7680 -6.7058 18 1 9.6423 3.4760 -7.3218 19 1 10.8744 5.5367 -7.6619 20 1 10.8134 4.5086 -5.4664 21 6 5.1862 6.9948 -2.8984 22 6 4.8169 6.6700 -1.4491 23 6 3.9994 2.4239 0.0010 24 8 5.3536 2.4708 0.0010 25 6 6.0461 1.2207 -0.0002 26 7 3.3658 1.2570 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.2628 4.3954 -0.0030 31 1 3.2317 5.7050 0.3526 32 1 4.7965 4.9152 0.6625 33 1 6.2989 4.4688 -1.1805 34 1 5.0574 3.3281 -1.7526 35 1 4.9164 4.5383 -3.9016 36 1 6.5902 4.0172 -3.5918 37 1 5.8813 6.1568 -5.4190 38 1 6.8993 7.4687 -4.7777 39 1 8.4140 6.6817 -8.0407 40 1 4.3069 6.8803 -3.5323 41 1 5.5483 8.0210 -2.9602 42 1 4.0155 7.3320 -1.1210 43 1 5.6894 6.8108 -0.8112 44 1 5.7726 0.6531 0.8893 45 1 5.7725 0.6547 -0.8906 46 1 7.1210 1.4008 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139231120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:16 Heat of formation + Delta-G solvation = -21.545594 kcal Electronic energy + Delta-G solvation = -28020.539863 eV Core-core repulsion = 24139.096645 eV Total energy + Delta-G solvation = -3881.443219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59225 -40.50041 -39.83150 -38.78165 -36.84063 -34.77832 -34.37877 -32.92317 -31.77564 -29.98465 -28.67593 -28.55297 -27.32988 -25.52008 -24.96271 -24.38589 -23.49010 -22.72335 -20.62913 -20.28502 -19.52547 -18.49398 -18.04439 -17.90168 -17.23539 -16.75937 -16.39318 -16.27526 -16.24149 -15.78156 -15.63171 -15.25427 -15.14304 -14.98902 -14.80607 -14.54170 -14.46155 -13.92725 -13.45355 -13.17417 -12.97853 -12.96076 -12.85325 -12.74107 -12.66246 -12.45739 -12.28385 -12.21818 -12.08969 -12.05702 -11.81993 -11.45407 -11.17116 -11.09909 -10.63026 -10.45681 -9.78980 -9.25785 -9.01650 -8.21678 -6.32029 -0.09983 0.05011 1.37044 1.39583 1.41091 1.52826 1.99497 2.39215 2.55733 3.01167 3.10098 3.12588 3.31782 3.58482 3.70917 3.81444 4.02621 4.15173 4.27008 4.33972 4.35462 4.36760 4.41919 4.42016 4.45881 4.54538 4.69299 4.70543 4.71936 4.77819 4.85484 4.92840 4.99090 5.01233 5.05514 5.09744 5.22115 5.29355 5.59832 5.63145 5.83511 6.00873 6.07172 6.10059 6.16573 6.35189 6.63920 6.83774 6.93450 7.37691 8.89665 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.003081 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.797658 B = 9084.845902 C = 9759.264458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.518 3.482 4 N -0.589 5.589 5 C 0.228 3.772 6 C -0.238 4.238 7 C 0.122 3.878 8 N -0.544 5.544 9 C 0.082 3.918 10 C 0.072 3.928 11 N -0.543 5.543 12 C 0.209 3.791 13 C -0.523 4.523 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.263 1.263 21 C 0.052 3.948 22 C 0.072 3.928 23 C 0.391 3.609 24 O -0.296 6.296 25 C 0.031 3.969 26 N -0.603 5.603 27 H 0.063 0.937 28 H 0.130 0.870 29 H 0.069 0.931 30 H 0.217 0.783 31 H 0.122 0.878 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.006 0.994 36 H 0.061 0.939 37 H -0.044 1.044 38 H 0.006 0.994 39 H 0.265 0.735 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 -8.494 20.021 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.210 6.210 3 C 0.215 3.785 4 N -0.323 5.323 5 C 0.067 3.933 6 C -0.245 4.245 7 C -0.006 4.006 8 N -0.270 5.270 9 C -0.047 4.047 10 C -0.057 4.057 11 N -0.268 5.268 12 C 0.083 3.917 13 C -0.562 4.562 14 H 0.080 0.920 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.794 3.206 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.076 4.076 22 C -0.056 4.056 23 C 0.204 3.796 24 O -0.199 6.199 25 C -0.063 4.063 26 N -0.345 5.345 27 H 0.081 0.919 28 H 0.148 0.852 29 H 0.088 0.912 30 H 0.233 0.767 31 H 0.140 0.860 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.024 0.976 36 H 0.079 0.921 37 H -0.026 1.026 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.483 -9.403 19.858 26.316 hybrid contribution 1.149 0.053 -1.035 1.547 sum -13.333 -9.350 18.824 24.890 Atomic orbital electron populations 1.23275 0.73406 1.05397 1.03207 1.86054 1.25574 1.22647 1.86738 1.20411 0.84688 0.85743 0.87638 1.68222 1.40419 0.99026 1.24583 1.23320 0.90689 0.95005 0.84322 1.20704 0.95272 0.95015 1.13471 1.20697 0.99232 0.92133 0.88556 1.62246 1.37874 1.03221 1.23619 1.22096 0.92773 0.96208 0.93577 1.21951 0.96880 0.90605 0.96254 1.62226 1.36330 1.02816 1.25451 1.19347 0.93637 0.95303 0.83437 1.21447 1.11064 1.24281 0.99373 0.92044 1.25928 1.01066 0.96631 0.96068 1.70084 1.42316 1.38094 1.07044 0.85383 0.78670 0.78320 0.78273 1.19925 1.20553 1.18738 1.22210 0.92306 0.96722 0.96409 1.22115 0.99843 0.89017 0.94579 1.19855 0.85136 0.88226 0.86367 1.86455 1.12999 1.34638 1.85825 1.23143 0.97267 0.83271 1.02632 1.66957 1.10286 1.29618 1.27665 0.91857 0.85213 0.91197 0.76654 0.85966 0.93349 0.94311 0.90788 0.97574 0.92061 1.02593 0.97542 0.92645 0.96190 0.90757 0.87043 0.94079 0.91487 0.92613 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.36 113.37 1.17 1.75 16 2 O -0.31 -7.19 10.55 -87.59 -0.92 -8.12 16 3 C 0.52 13.38 8.49 180.58 1.53 14.91 16 4 N -0.59 -13.03 9.22 -313.68 -2.89 -15.92 16 5 C 0.23 4.20 10.95 84.60 0.93 5.13 16 6 C -0.24 -5.17 5.19 -19.59 -0.10 -5.27 16 7 C 0.12 2.40 5.02 85.56 0.43 2.83 16 8 N -0.54 -14.79 4.70 -900.28 -4.23 -19.02 16 9 C 0.08 2.68 4.19 86.31 0.36 3.04 16 10 C 0.07 3.02 5.43 86.31 0.47 3.49 16 11 N -0.54 -24.58 4.70 -900.29 -4.23 -28.81 16 12 C 0.21 11.60 4.72 85.56 0.40 12.01 16 13 C -0.52 -30.52 8.47 25.60 0.22 -30.31 16 14 H 0.06 3.52 7.13 -2.91 -0.02 3.50 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.41 13.29 21.44 0.28 -57.13 16 17 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 21 C 0.05 1.89 5.61 86.31 0.48 2.37 16 22 C 0.07 1.92 5.61 86.31 0.48 2.40 16 23 C 0.39 10.08 6.27 84.82 0.53 10.62 16 24 O -0.30 -7.40 6.84 -88.10 -0.60 -8.00 16 25 C 0.03 0.63 10.41 113.37 1.18 1.81 16 26 N -0.60 -16.72 9.41 -426.37 -4.01 -20.73 16 27 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 28 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 30 H 0.22 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.12 1.53 7.92 -2.39 -0.02 1.51 16 32 H 0.05 1.00 7.91 -2.39 -0.02 0.98 16 33 H 0.04 1.31 7.95 -2.38 -0.02 1.29 16 34 H 0.07 2.41 4.69 -2.39 -0.01 2.40 16 35 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.06 2.80 6.79 -2.39 -0.02 2.78 16 37 H -0.04 -2.66 8.12 -2.39 -0.02 -2.68 16 38 H 0.01 0.38 8.03 -2.38 -0.02 0.36 16 39 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 42 H 0.11 2.14 8.07 -2.39 -0.02 2.12 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 45 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 46 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -74.25 369.92 -5.06 -79.31 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.97 Total: 6.08 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 8.55 Total: 25.30 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -15.08 Total: -141.62 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.53 Total: -16.11 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -74.25 -5.06 -79.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139231120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.766 kcal (2) G-P(sol) polarization free energy of solvation -74.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds