Wall clock time and date at job start Sat Apr 11 2020 00:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37828 * 119.93934 * 2 1 4 4 C 1.39650 * 119.87789 * 180.27849 * 3 2 1 5 5 C 1.47726 * 120.11902 * 179.72689 * 4 3 2 6 6 O 1.21566 * 120.00149 * 180.02562 * 5 4 3 7 7 N 1.34782 * 120.00117 * 0.02562 * 5 4 3 8 8 C 1.46496 * 120.00376 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.47191 * 325.00642 * 8 7 5 10 10 C 1.53000 * 109.47041 * 85.00243 * 8 7 5 11 11 C 1.52996 * 109.47460 * 205.00560 * 8 7 5 12 12 C 1.52995 * 109.47203 * 64.99681 * 11 8 7 13 13 H 1.09005 * 109.47016 * 55.00605 * 12 11 8 14 14 C 1.52997 * 109.47049 * 175.00207 * 12 11 8 15 15 N 1.46498 * 109.47652 * 295.00441 * 12 11 8 16 16 C 1.36935 * 120.00418 * 154.99967 * 15 12 11 17 17 H 1.08001 * 119.99465 * 359.97438 * 16 15 12 18 18 C 1.38807 * 120.00156 * 180.02562 * 16 15 12 19 19 N 1.31624 * 119.99909 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00184 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46778 * 59.99489 * 20 18 16 22 22 H 1.48497 * 109.47141 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46628 * 299.99751 * 20 18 16 24 24 C 1.39649 * 119.76496 * 359.74204 * 4 3 2 25 25 C 1.37828 * 119.88082 * 359.97438 * 24 4 3 26 26 C 1.50699 * 119.94455 * 179.97438 * 25 24 4 27 27 C 1.38657 * 120.11834 * 359.97438 * 25 24 4 28 28 F 1.35104 * 119.88281 * 180.02562 * 27 25 24 29 29 H 1.09001 * 109.46801 * 270.24908 * 1 2 3 30 30 H 1.08997 * 109.47444 * 30.25778 * 1 2 3 31 31 H 1.09009 * 109.46953 * 150.25682 * 1 2 3 32 32 H 1.08007 * 120.06066 * 0.02562 * 3 2 1 33 33 H 0.97005 * 119.99818 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.47154 * 300.00366 * 10 8 7 35 35 H 1.09004 * 109.47226 * 60.00020 * 10 8 7 36 36 H 1.09002 * 109.47184 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47521 * 185.00406 * 11 8 7 38 38 H 1.09001 * 109.46877 * 305.00055 * 11 8 7 39 39 H 1.08998 * 109.47610 * 300.00068 * 14 12 11 40 40 H 1.08997 * 109.47492 * 60.00236 * 14 12 11 41 41 H 1.09002 * 109.47135 * 180.02562 * 14 12 11 42 42 H 0.97005 * 119.99395 * 334.99635 * 15 12 11 43 43 H 0.96997 * 119.99667 * 180.02562 * 19 18 16 44 44 H 1.08003 * 120.06071 * 180.02562 * 24 4 3 45 45 H 1.08992 * 109.47485 * 269.98623 * 26 25 24 46 46 H 1.09005 * 109.46394 * 29.98808 * 26 25 24 47 47 H 1.09006 * 109.46958 * 149.98013 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.1944 0.0000 4 6 3.5914 1.1929 -0.0059 5 6 4.3341 2.4699 -0.0120 6 8 5.5497 2.4661 -0.0176 7 7 3.6638 3.6392 -0.0114 8 6 4.4002 4.9057 -0.0180 9 1 5.3136 4.7979 0.5670 10 6 4.7580 5.2800 -1.4577 11 6 3.5296 6.0051 0.5935 12 6 3.2753 5.6926 2.0694 13 1 4.2279 5.5574 2.5816 14 6 2.5109 6.8518 2.7118 15 7 2.4833 4.4650 2.1793 16 6 2.5506 3.7062 3.3171 17 1 3.1879 4.0125 4.1335 18 6 1.8006 2.5428 3.4210 19 7 1.0243 2.1693 2.4259 20 14 1.8919 1.5080 4.9736 21 1 1.4554 2.3214 6.1368 22 1 1.0026 0.3270 4.8343 23 1 3.2899 1.0536 5.1839 24 6 4.2834 -0.0201 -0.0063 25 6 3.5857 -1.2087 -0.0003 26 6 4.3309 -2.5185 -0.0013 27 6 2.1991 -1.2015 0.0066 28 9 1.5199 -2.3694 0.0129 29 1 -0.3633 0.0045 1.0277 30 1 -0.3634 0.8876 -0.5178 31 1 -0.3633 -0.8924 -0.5099 32 1 1.6549 2.1297 0.0004 33 1 2.6938 3.6423 -0.0066 34 1 5.3783 4.4967 -1.8934 35 1 3.8447 5.3877 -2.0429 36 1 5.3063 6.2220 -1.4627 37 1 4.0415 6.9637 0.5080 38 1 2.5786 6.0526 0.0630 39 1 3.1001 7.7652 2.6302 40 1 1.5583 6.9871 2.1998 41 1 2.3301 6.6293 3.7635 42 1 1.9111 4.1898 1.4459 43 1 0.4999 1.3565 2.4986 44 1 5.3634 -0.0268 -0.0104 45 1 4.5053 -2.8366 -1.0291 46 1 5.2868 -2.3929 0.5073 47 1 3.7398 -3.2733 0.5173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146397559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:25 Heat of formation + Delta-G solvation = -58.517115 kcal Electronic energy + Delta-G solvation = -29105.304655 eV Core-core repulsion = 25202.338269 eV Total energy + Delta-G solvation = -3902.966386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.56976 -39.73094 -38.14222 -36.67812 -34.18986 -33.42607 -32.29510 -31.53079 -30.09217 -28.55772 -27.01161 -26.36495 -26.21290 -23.68632 -23.44321 -21.00139 -20.57782 -20.23391 -19.37790 -17.25836 -17.04593 -16.75852 -16.32503 -15.53263 -15.40692 -14.80917 -14.37180 -14.03187 -13.86076 -13.67046 -13.37769 -13.15750 -13.01629 -12.90896 -12.80540 -12.65270 -12.63130 -12.50982 -12.15047 -11.95066 -11.75163 -11.69552 -11.65590 -11.46559 -11.10464 -10.89068 -10.83962 -10.75019 -10.50060 -10.36248 -10.28436 -9.93848 -9.69774 -9.27009 -8.98891 -8.41032 -8.19328 -8.06315 -6.95392 -5.84429 -3.06796 1.27478 1.76409 3.36575 3.41949 3.46634 3.49717 3.80289 4.34991 4.57037 4.63874 5.01379 5.05482 5.12846 5.26572 5.41412 5.49258 5.53967 5.57454 5.66731 5.72894 5.76292 5.77603 5.83885 5.90448 5.96246 5.99907 6.04821 6.12057 6.13067 6.22366 6.27314 6.35146 6.37927 6.48148 6.54526 6.57998 6.59478 6.61834 6.82720 6.85904 6.88531 7.02959 7.16871 7.34499 7.67697 8.20092 8.36564 8.90945 9.48012 9.99459 10.35709 11.37548 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.006026 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.187930 B = 4645.800444 C = 6074.229825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.117 4.117 3 C 0.005 3.995 4 C -0.141 4.141 5 C 0.574 3.426 6 O -0.563 6.563 7 N -0.693 5.693 8 C 0.150 3.850 9 H 0.083 0.917 10 C -0.162 4.162 11 C -0.134 4.134 12 C 0.169 3.831 13 H 0.048 0.952 14 C -0.163 4.163 15 N -0.715 5.715 16 C -0.224 4.224 17 H 0.065 0.935 18 C -0.006 4.006 19 N -0.924 5.924 20 Si 0.897 3.103 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.289 1.289 24 C -0.044 4.044 25 C -0.147 4.147 26 C -0.105 4.105 27 C 0.107 3.893 28 F -0.143 7.143 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.145 0.855 33 H 0.403 0.597 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.376 0.624 43 H 0.255 0.745 44 H 0.134 0.866 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 0.241 -8.803 8.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.015 4.015 4 C -0.144 4.144 5 C 0.362 3.638 6 O -0.444 6.444 7 N -0.345 5.345 8 C 0.045 3.955 9 H 0.101 0.899 10 C -0.221 4.221 11 C -0.172 4.172 12 C 0.059 3.941 13 H 0.066 0.934 14 C -0.223 4.223 15 N -0.358 5.358 16 C -0.355 4.355 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.573 5.573 20 Si 0.729 3.271 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.216 1.216 24 C -0.063 4.063 25 C -0.148 4.148 26 C -0.162 4.162 27 C 0.087 3.913 28 F -0.121 7.121 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.241 0.759 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.211 0.789 43 H 0.066 0.934 44 H 0.152 0.848 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.435 0.156 -8.621 8.959 hybrid contribution -0.838 -0.876 1.063 1.612 sum 1.597 -0.720 -7.558 7.758 Atomic orbital electron populations 1.20598 0.90157 1.01747 1.03177 1.19706 0.97083 0.91323 1.03641 1.21076 0.92095 0.97952 0.90372 1.19886 0.93921 0.93470 1.07154 1.17972 0.86762 0.83778 0.75252 1.90674 1.13739 1.87902 1.52100 1.45879 1.10493 1.04639 1.73522 1.20809 0.95996 0.83263 0.95455 0.89851 1.22209 1.01361 1.01356 0.97144 1.22211 0.99669 0.97513 0.97827 1.20291 0.94501 0.87385 0.91939 0.93396 1.22411 1.00148 0.98007 1.01726 1.42428 1.51603 1.23228 1.18492 1.19132 1.20436 1.01964 0.93985 0.91660 1.24466 0.99945 0.98141 0.97598 1.69490 1.31444 1.25655 1.30728 0.86413 0.77262 0.80016 0.83448 1.21658 1.21782 1.21565 1.20824 1.00105 0.89814 0.95567 1.19615 0.91678 0.96564 1.06955 1.20619 0.99906 0.93570 1.02115 1.17605 0.89311 0.80880 1.03464 1.91409 1.80228 1.46640 1.93867 0.90323 0.91146 0.92694 0.83715 0.75852 0.92361 0.92816 0.92134 0.90777 0.91778 0.94605 0.93624 0.92895 0.78908 0.93409 0.84790 0.91437 0.91259 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 9.83 36.01 0.35 -1.23 16 2 C -0.12 -2.08 5.88 -104.61 -0.62 -2.69 16 3 C 0.00 0.09 7.49 -39.20 -0.29 -0.21 16 4 C -0.14 -2.72 5.87 -104.97 -0.62 -3.34 16 5 C 0.57 11.50 7.73 -12.38 -0.10 11.40 16 6 O -0.56 -12.51 16.01 5.31 0.08 -12.42 16 7 N -0.69 -12.22 3.75 -54.79 -0.21 -12.42 16 8 C 0.15 2.35 2.57 -67.93 -0.17 2.18 16 9 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 10 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 11 C -0.13 -1.92 4.43 -26.74 -0.12 -2.04 16 12 C 0.17 3.01 2.89 -67.94 -0.20 2.82 16 13 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 14 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 15 N -0.71 -15.28 3.84 -53.43 -0.21 -15.49 16 16 C -0.22 -5.62 9.93 -15.06 -0.15 -5.77 16 17 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -22.71 10.73 55.49 0.60 -22.11 16 20 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C -0.04 -0.80 9.24 -39.20 -0.36 -1.16 16 25 C -0.15 -2.48 5.88 -104.62 -0.62 -3.10 16 26 C -0.11 -1.42 9.83 36.01 0.35 -1.06 16 27 C 0.11 1.89 7.19 -39.27 -0.28 1.61 16 28 F -0.14 -2.42 15.66 2.25 0.04 -2.39 16 29 H 0.08 1.35 7.30 -51.93 -0.38 0.97 16 30 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.05 0.78 7.63 -51.92 -0.40 0.38 16 32 H 0.15 2.70 5.84 -52.48 -0.31 2.39 16 33 H 0.40 7.03 4.54 -40.82 -0.19 6.84 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.38 8.10 5.70 -40.82 -0.23 7.86 16 43 H 0.26 6.34 7.47 -40.82 -0.30 6.03 16 44 H 0.13 2.34 7.65 -52.48 -0.40 1.93 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 47 H 0.06 0.86 7.63 -51.93 -0.40 0.46 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -27.20 380.80 -8.45 -35.65 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -7.27 Total: 13.65 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.20 Total: -6.95 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.18 Total: -50.03 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.20 -8.45 -35.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146397559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.866 kcal (2) G-P(sol) polarization free energy of solvation -27.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds