Wall clock time and date at job start Sat Apr 11 2020 00:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 114.00064 * 2 1 4 4 C 1.52997 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47098 * 184.39721 * 4 3 2 6 6 N 1.46503 * 109.45927 * 303.08075 * 5 4 3 7 7 C 1.34777 * 120.00003 * 303.01577 * 6 5 4 8 8 O 1.21599 * 120.00162 * 355.01932 * 7 6 5 9 9 C 1.47431 * 119.99750 * 175.02504 * 7 6 5 10 10 C 1.41290 * 126.41724 * 359.97018 * 9 7 6 11 11 N 1.30447 * 108.02554 * 180.02562 * 10 9 7 12 12 N 1.39943 * 108.89309 * 359.78414 * 11 10 9 13 13 H 0.96999 * 125.75467 * 180.25432 * 12 11 10 14 14 C 1.34259 * 108.49203 * 0.36189 * 12 11 10 15 15 C 1.53035 * 109.44884 * 63.04634 * 5 4 3 16 16 C 1.53195 * 109.31260 * 181.38170 * 15 5 4 17 17 N 1.46936 * 108.77338 * 305.36508 * 16 15 5 18 18 C 1.36933 * 120.63116 * 233.58692 * 17 16 15 19 19 H 1.08011 * 120.00052 * 31.79479 * 18 17 16 20 20 C 1.38807 * 120.00043 * 211.79652 * 18 17 16 21 21 N 1.31624 * 120.00073 * 10.83843 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 190.83687 * 20 18 17 23 23 H 1.48506 * 109.46951 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46970 * 119.99590 * 22 20 18 25 25 H 1.48497 * 109.47421 * 240.00324 * 22 20 18 26 26 C 1.46922 * 118.73718 * 53.61166 * 17 16 15 27 27 C 1.53041 * 109.45948 * 183.11087 * 5 4 3 28 28 H 1.08997 * 109.46975 * 299.99716 * 1 2 3 29 29 H 1.08998 * 109.47017 * 60.00025 * 1 2 3 30 30 H 1.09006 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46609 * 60.00350 * 3 2 1 32 32 H 1.09001 * 109.46880 * 300.00470 * 3 2 1 33 33 H 1.08998 * 109.46817 * 64.39633 * 4 3 2 34 34 H 1.09003 * 109.47156 * 304.39840 * 4 3 2 35 35 H 0.97002 * 119.99559 * 123.00819 * 6 5 4 36 36 H 1.07997 * 125.98314 * 0.02562 * 10 9 7 37 37 H 1.08000 * 126.28812 * 179.89986 * 14 12 11 38 38 H 1.08994 * 109.50016 * 301.33102 * 15 5 4 39 39 H 1.08997 * 109.49987 * 61.43187 * 15 5 4 40 40 H 1.08998 * 109.58991 * 185.58137 * 16 15 5 41 41 H 1.08999 * 109.58780 * 65.15116 * 16 15 5 42 42 H 0.96994 * 119.99762 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.58386 * 186.60664 * 26 17 16 44 44 H 1.08998 * 109.70725 * 66.24294 * 26 17 16 45 45 H 1.08991 * 109.49863 * 298.57627 * 27 5 4 46 46 H 1.08999 * 109.49852 * 58.67802 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1576 2.5780 0.1099 6 7 3.6737 3.4171 -0.9892 7 6 3.8549 3.0257 -2.2660 8 8 4.4985 2.0230 -2.5091 9 6 3.2730 3.8133 -3.3681 10 6 2.5057 4.9930 -3.2420 11 7 2.1745 5.3891 -4.4399 12 7 2.7103 4.4977 -5.3763 13 1 2.6158 4.5628 -6.3395 14 6 3.3752 3.5358 -4.7165 15 6 3.7599 3.2090 1.4463 16 6 4.3557 4.6172 1.5389 17 7 5.8061 4.5324 1.3194 18 6 6.6815 5.0670 2.2266 19 1 6.4271 5.0857 3.2762 20 6 7.8957 5.5849 1.7975 21 7 8.1194 5.7593 0.5122 22 14 9.2124 6.0344 3.0440 23 1 8.7170 5.7443 4.4136 24 1 10.4362 5.2354 2.7813 25 1 9.5307 7.4802 2.9283 26 6 6.2993 3.8636 0.1078 27 6 5.6817 2.4637 0.0313 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8622 0.7134 -0.9276 34 1 3.8522 0.5770 0.8471 35 1 3.2228 4.2544 -0.7979 36 1 2.2401 5.4812 -2.3160 37 1 3.8977 2.7009 -5.1596 38 1 2.6735 3.2687 1.5115 39 1 4.1410 2.5982 2.2647 40 1 4.1595 5.0328 2.5272 41 1 3.9075 5.2545 0.7766 42 1 8.9680 6.1208 0.2123 43 1 7.3853 3.7818 0.1520 44 1 6.0116 4.4385 -0.7724 45 1 6.0446 1.8600 0.8629 46 1 5.9630 1.9930 -0.9107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150971118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:37 Heat of formation + Delta-G solvation = 16.355666 kcal Electronic energy + Delta-G solvation = -28882.531051 eV Core-core repulsion = 25002.731354 eV Total energy + Delta-G solvation = -3879.799697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37659 -39.94481 -37.72417 -37.08273 -34.47542 -32.49409 -31.55742 -31.29759 -30.23055 -29.83595 -28.77109 -26.50726 -24.85322 -23.33434 -23.07226 -21.99806 -21.95669 -20.46934 -19.91540 -18.74943 -18.41547 -16.90904 -16.34885 -16.07954 -15.83525 -15.08688 -15.04432 -14.83103 -14.66952 -14.41755 -14.12683 -13.80760 -13.68395 -13.39285 -13.08254 -12.97173 -12.86873 -12.53827 -12.24863 -11.62891 -11.46346 -11.37793 -11.17641 -11.01069 -10.99820 -10.82408 -10.69135 -10.30948 -10.19582 -9.95694 -9.94216 -9.71593 -9.69651 -9.39081 -9.04814 -8.86623 -8.46264 -8.43275 -6.56612 -5.74389 -3.23145 1.54184 2.17797 2.61042 3.38664 3.46400 3.48049 3.60381 3.75500 3.84621 4.51216 4.60596 4.78009 5.07531 5.14670 5.22190 5.27075 5.29934 5.37285 5.40164 5.42007 5.50555 5.55670 5.58399 5.68409 5.73006 5.85135 6.06369 6.18820 6.24528 6.29617 6.42725 6.47179 6.58150 6.69673 6.76180 6.87522 6.96457 6.97213 7.15550 7.23978 7.37985 7.48788 7.78934 7.84151 8.00720 8.51792 8.69337 9.26479 9.87887 10.46062 11.32907 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.004565 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.830228 B = 6132.413154 C = 7886.838426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.066 3.934 4 C -0.129 4.129 5 C 0.197 3.803 6 N -0.708 5.708 7 C 0.596 3.404 8 O -0.546 6.546 9 C -0.285 4.285 10 C 0.086 3.914 11 N -0.299 5.299 12 N -0.468 5.468 13 H 0.442 0.558 14 C 0.128 3.872 15 C -0.141 4.141 16 C 0.146 3.854 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.063 0.937 20 C 0.006 3.994 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.180 3.820 27 C -0.150 4.150 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.396 0.604 36 H 0.189 0.811 37 H 0.190 0.810 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.014 0.986 42 H 0.252 0.748 43 H 0.083 0.917 44 H 0.018 0.982 45 H 0.059 0.941 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 -6.190 -7.720 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.010 4.010 4 C -0.167 4.167 5 C 0.111 3.889 6 N -0.359 5.359 7 C 0.383 3.617 8 O -0.424 6.424 9 C -0.300 4.300 10 C -0.103 4.103 11 N -0.121 5.121 12 N -0.173 5.173 13 H 0.287 0.713 14 C -0.024 4.024 15 C -0.181 4.181 16 C 0.019 3.981 17 N -0.313 5.313 18 C -0.383 4.383 19 H 0.081 0.919 20 C -0.193 4.193 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.054 3.946 27 C -0.190 4.190 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.231 0.769 36 H 0.206 0.794 37 H 0.207 0.793 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.037 0.963 45 H 0.078 0.922 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.914 -6.106 -8.590 18.262 hybrid contribution 0.689 0.438 0.621 1.026 sum -14.225 -5.669 -7.969 17.262 Atomic orbital electron populations 1.22681 0.81747 1.02264 0.99692 1.87879 1.19104 1.28873 1.95379 1.22611 0.94737 0.83893 0.99793 1.21976 0.92299 0.97815 1.04632 1.20169 0.95183 0.87978 0.85524 1.45867 1.60197 1.24764 1.05041 1.17100 0.78980 0.83764 0.81854 1.90701 1.40671 1.26895 1.84172 1.20474 1.13448 1.02227 0.93823 1.24108 0.95412 0.94169 0.96566 1.77135 1.21782 1.14737 0.98398 1.46202 1.41505 1.19909 1.09693 0.71343 1.23031 0.93775 0.93321 0.92309 1.22419 0.99221 1.00539 0.95888 1.20870 0.86578 0.92017 0.98606 1.44025 0.99061 1.64497 1.23725 1.19192 0.97894 1.32744 0.88509 0.91897 1.25160 0.99894 0.98451 0.95793 1.70000 1.23899 1.47885 1.12785 0.86235 0.81965 0.77733 0.80889 1.20263 1.21620 1.21741 1.20677 0.99316 0.86918 0.87664 1.22594 0.92596 1.01924 1.01846 0.94296 0.94456 0.90032 0.93313 0.93707 0.89146 0.90744 0.76909 0.79412 0.79289 0.92523 0.90544 0.92625 0.96840 0.93737 0.89841 0.96349 0.92239 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.56 10.70 -35.23 -0.38 -5.94 16 3 C 0.07 0.89 5.50 37.16 0.20 1.10 16 4 C -0.13 -1.99 4.32 -26.73 -0.12 -2.11 16 5 C 0.20 3.21 0.35 -131.78 -0.05 3.17 16 6 N -0.71 -10.67 3.34 -48.63 -0.16 -10.84 16 7 C 0.60 9.47 6.98 -12.52 -0.09 9.39 16 8 O -0.55 -10.13 13.17 5.28 0.07 -10.06 16 9 C -0.28 -3.81 6.13 -105.07 -0.64 -4.45 16 10 C 0.09 1.04 11.51 -16.98 -0.20 0.85 16 11 N -0.30 -3.66 12.63 30.86 0.39 -3.27 16 12 N -0.47 -4.45 7.29 30.85 0.22 -4.23 16 13 H 0.44 2.53 8.96 -182.72 -1.64 0.90 16 14 C 0.13 1.39 11.82 -16.56 -0.20 1.19 16 15 C -0.14 -2.23 4.72 -26.61 -0.13 -2.35 16 16 C 0.15 2.80 6.24 -3.70 -0.02 2.78 16 17 N -0.59 -14.20 2.98 -172.31 -0.51 -14.72 16 18 C -0.25 -6.81 9.57 -15.06 -0.14 -6.96 16 19 H 0.06 1.66 7.85 -52.48 -0.41 1.25 16 20 C 0.01 0.16 5.04 -17.43 -0.09 0.07 16 21 N -0.90 -26.12 11.09 55.49 0.62 -25.51 16 22 Si 0.90 21.63 29.57 -169.99 -5.03 16.60 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.18 4.29 4.99 -3.71 -0.02 4.27 16 27 C -0.15 -2.98 4.71 -26.61 -0.13 -3.11 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.61 6.27 -51.93 -0.33 0.28 16 32 H 0.04 0.60 7.45 -51.93 -0.39 0.22 16 33 H 0.09 1.58 6.21 -51.93 -0.32 1.26 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.40 5.35 6.15 -40.82 -0.25 5.09 16 36 H 0.19 1.82 7.51 -52.49 -0.39 1.43 16 37 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.06 0.74 6.35 -51.93 -0.33 0.41 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.06 7.93 -51.93 -0.41 0.64 16 41 H 0.01 0.25 6.88 -51.93 -0.36 -0.10 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.08 2.30 6.14 -51.93 -0.32 1.98 16 44 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.52 6.25 -51.93 -0.32 1.20 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -33.71 361.93 -7.79 -41.49 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.97 Total: 5.73 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -0.49 Total: 5.28 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.55 Total: -58.56 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.31 Total: -16.00 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.71 -7.79 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150971118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.849 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds