Wall clock time and date at job start Sat Apr 11 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 114.00064 * 2 1 4 4 C 1.52997 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47098 * 184.39721 * 4 3 2 6 6 N 1.46503 * 109.45927 * 303.08075 * 5 4 3 7 7 C 1.34777 * 120.00003 * 303.01577 * 6 5 4 8 8 O 1.21599 * 120.00162 * 355.01932 * 7 6 5 9 9 C 1.47431 * 119.99750 * 175.02504 * 7 6 5 10 10 C 1.41290 * 126.41724 * 359.97018 * 9 7 6 11 11 N 1.30447 * 108.02554 * 180.02562 * 10 9 7 12 12 N 1.39943 * 108.89309 * 359.78414 * 11 10 9 13 13 H 0.96999 * 125.75467 * 180.25432 * 12 11 10 14 14 C 1.34259 * 108.49203 * 0.36189 * 12 11 10 15 15 C 1.53035 * 109.44884 * 63.04634 * 5 4 3 16 16 C 1.53195 * 109.31260 * 181.38170 * 15 5 4 17 17 N 1.46936 * 108.77338 * 305.36508 * 16 15 5 18 18 C 1.36933 * 120.63116 * 233.58692 * 17 16 15 19 19 H 1.08011 * 120.00052 * 31.79479 * 18 17 16 20 20 C 1.38807 * 120.00043 * 211.79652 * 18 17 16 21 21 N 1.31624 * 120.00073 * 10.83843 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 190.83687 * 20 18 17 23 23 H 1.48506 * 109.46951 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46970 * 119.99590 * 22 20 18 25 25 H 1.48497 * 109.47421 * 240.00324 * 22 20 18 26 26 C 1.46922 * 118.73718 * 53.61166 * 17 16 15 27 27 C 1.53041 * 109.45948 * 183.11087 * 5 4 3 28 28 H 1.08997 * 109.46975 * 299.99716 * 1 2 3 29 29 H 1.08998 * 109.47017 * 60.00025 * 1 2 3 30 30 H 1.09006 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46609 * 60.00350 * 3 2 1 32 32 H 1.09001 * 109.46880 * 300.00470 * 3 2 1 33 33 H 1.08998 * 109.46817 * 64.39633 * 4 3 2 34 34 H 1.09003 * 109.47156 * 304.39840 * 4 3 2 35 35 H 0.97002 * 119.99559 * 123.00819 * 6 5 4 36 36 H 1.07997 * 125.98314 * 0.02562 * 10 9 7 37 37 H 1.08000 * 126.28812 * 179.89986 * 14 12 11 38 38 H 1.08994 * 109.50016 * 301.33102 * 15 5 4 39 39 H 1.08997 * 109.49987 * 61.43187 * 15 5 4 40 40 H 1.08998 * 109.58991 * 185.58137 * 16 15 5 41 41 H 1.08999 * 109.58780 * 65.15116 * 16 15 5 42 42 H 0.96994 * 119.99762 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.58386 * 186.60664 * 26 17 16 44 44 H 1.08998 * 109.70725 * 66.24294 * 26 17 16 45 45 H 1.08991 * 109.49863 * 298.57627 * 27 5 4 46 46 H 1.08999 * 109.49852 * 58.67802 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1576 2.5780 0.1099 6 7 3.6737 3.4171 -0.9892 7 6 3.8549 3.0257 -2.2660 8 8 4.4985 2.0230 -2.5091 9 6 3.2730 3.8133 -3.3681 10 6 2.5057 4.9930 -3.2420 11 7 2.1745 5.3891 -4.4399 12 7 2.7103 4.4977 -5.3763 13 1 2.6158 4.5628 -6.3395 14 6 3.3752 3.5358 -4.7165 15 6 3.7599 3.2090 1.4463 16 6 4.3557 4.6172 1.5389 17 7 5.8061 4.5324 1.3194 18 6 6.6815 5.0670 2.2266 19 1 6.4271 5.0857 3.2762 20 6 7.8957 5.5849 1.7975 21 7 8.1194 5.7593 0.5122 22 14 9.2124 6.0344 3.0440 23 1 8.7170 5.7443 4.4136 24 1 10.4362 5.2354 2.7813 25 1 9.5307 7.4802 2.9283 26 6 6.2993 3.8636 0.1078 27 6 5.6817 2.4637 0.0313 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8622 0.7134 -0.9276 34 1 3.8522 0.5770 0.8471 35 1 3.2228 4.2544 -0.7979 36 1 2.2401 5.4812 -2.3160 37 1 3.8977 2.7009 -5.1596 38 1 2.6735 3.2687 1.5115 39 1 4.1410 2.5982 2.2647 40 1 4.1595 5.0328 2.5272 41 1 3.9075 5.2545 0.7766 42 1 8.9680 6.1208 0.2123 43 1 7.3853 3.7818 0.1520 44 1 6.0116 4.4385 -0.7724 45 1 6.0446 1.8600 0.8629 46 1 5.9630 1.9930 -0.9107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150971118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:36 Heat of formation + Delta-G solvation = -7.763809 kcal Electronic energy + Delta-G solvation = -28883.576950 eV Core-core repulsion = 25002.731354 eV Total energy + Delta-G solvation = -3880.845596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32704 -41.22941 -38.80313 -38.48782 -36.13215 -33.77063 -33.19535 -32.33728 -31.74451 -30.95946 -30.28000 -27.62035 -26.38360 -24.67526 -24.41306 -23.47780 -22.90101 -21.96710 -21.06936 -20.07032 -19.54447 -18.70179 -17.41653 -17.22823 -16.85254 -16.77070 -16.29474 -16.06389 -15.67880 -15.52793 -15.45845 -15.27656 -15.08158 -14.88597 -14.70487 -14.22122 -13.94353 -13.79172 -13.65556 -13.13475 -12.98203 -12.72530 -12.68252 -12.59176 -12.22520 -12.19478 -12.05896 -12.02260 -11.87446 -11.75607 -11.25199 -11.21564 -10.81079 -10.57991 -10.51238 -10.36708 -9.96478 -9.65970 -8.54585 -7.81368 -5.32213 0.62131 1.20082 1.47088 1.49394 1.58966 1.83073 2.43681 2.53843 2.60993 2.86790 3.34822 3.65460 3.77289 3.87312 3.96667 4.04625 4.17383 4.22241 4.26311 4.42051 4.44814 4.51830 4.57209 4.59752 4.63948 4.72547 4.78651 4.83903 4.86587 4.99604 5.07075 5.13469 5.19713 5.25772 5.34005 5.39350 5.42379 5.57163 5.69380 5.77128 5.86589 6.25285 6.30459 6.46323 6.51058 6.81990 7.21402 7.48865 7.92620 8.44917 9.23576 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.004565 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.830228 B = 6132.413154 C = 7886.838426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.074 3.926 4 C -0.120 4.120 5 C 0.205 3.795 6 N -0.703 5.703 7 C 0.594 3.406 8 O -0.579 6.579 9 C -0.317 4.317 10 C 0.086 3.914 11 N -0.319 5.319 12 N -0.450 5.450 13 H 0.459 0.541 14 C 0.142 3.858 15 C -0.127 4.127 16 C 0.141 3.859 17 N -0.607 5.607 18 C -0.258 4.258 19 H 0.068 0.932 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.963 3.037 23 H -0.264 1.264 24 H -0.296 1.296 25 H -0.293 1.293 26 C 0.197 3.803 27 C -0.138 4.138 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.405 0.595 36 H 0.207 0.793 37 H 0.212 0.788 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.246 0.754 43 H 0.039 0.961 44 H -0.004 1.004 45 H 0.053 0.947 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.422 -6.272 -7.251 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.002 4.002 4 C -0.158 4.158 5 C 0.119 3.881 6 N -0.354 5.354 7 C 0.383 3.617 8 O -0.461 6.461 9 C -0.332 4.332 10 C -0.101 4.101 11 N -0.141 5.141 12 N -0.157 5.157 13 H 0.307 0.693 14 C -0.012 4.012 15 C -0.167 4.167 16 C 0.016 3.984 17 N -0.330 5.330 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.792 3.208 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.220 1.220 26 C 0.071 3.929 27 C -0.178 4.178 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.242 0.758 36 H 0.224 0.776 37 H 0.228 0.772 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.014 0.986 45 H 0.071 0.929 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.391 -6.167 -8.125 20.161 hybrid contribution 1.392 0.433 0.405 1.513 sum -15.999 -5.734 -7.720 18.667 Atomic orbital electron populations 1.22904 0.79650 1.03668 1.00744 1.87836 1.21415 1.29032 1.95582 1.22476 0.92936 0.84123 1.00655 1.21788 0.94158 0.96516 1.03363 1.19960 0.92439 0.89218 0.86517 1.45765 1.60003 1.24957 1.04683 1.17461 0.78373 0.83459 0.82455 1.90683 1.42274 1.28469 1.84650 1.20414 1.15441 1.03281 0.94053 1.24395 0.94772 0.93646 0.97332 1.77099 1.22568 1.15641 0.98754 1.46216 1.40233 1.18831 1.10429 0.69280 1.23365 0.92615 0.93472 0.91752 1.22293 1.01416 0.97880 0.95065 1.21084 0.83705 0.94412 0.99217 1.44229 1.01107 1.64616 1.23073 1.19547 0.98520 1.31456 0.89286 0.91435 1.25874 1.02047 0.99277 0.97263 1.70169 1.23968 1.49460 1.14570 0.85262 0.79184 0.76886 0.79463 1.18791 1.22289 1.21987 1.20280 0.96877 0.88711 0.87040 1.22378 0.95660 0.98923 1.00813 0.92815 0.93751 0.88613 0.91479 0.93602 0.91476 0.90811 0.75828 0.77647 0.77185 0.88442 0.90854 0.92128 0.95591 0.94480 0.94280 0.98620 0.92864 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -10.94 10.70 -148.98 -1.59 -12.53 16 3 C 0.07 1.83 5.50 71.98 0.40 2.23 16 4 C -0.12 -3.57 4.32 30.59 0.13 -3.44 16 5 C 0.20 6.50 0.35 3.63 0.00 6.50 16 6 N -0.70 -20.56 3.34 -426.03 -1.43 -21.98 16 7 C 0.59 18.72 6.98 86.66 0.60 19.33 16 8 O -0.58 -21.86 13.17 -4.03 -0.05 -21.91 16 9 C -0.32 -8.16 6.13 -20.15 -0.12 -8.29 16 10 C 0.09 1.97 11.51 85.65 0.99 2.96 16 11 N -0.32 -7.26 12.63 -56.28 -0.71 -7.97 16 12 N -0.45 -7.69 7.29 -56.32 -0.41 -8.10 16 13 H 0.46 4.23 8.96 -213.42 -1.91 2.31 16 14 C 0.14 2.86 11.82 84.28 1.00 3.86 16 15 C -0.13 -3.71 4.72 30.67 0.14 -3.56 16 16 C 0.14 5.17 6.24 86.36 0.54 5.71 16 17 N -0.61 -29.33 2.98 -699.07 -2.09 -31.42 16 18 C -0.26 -13.90 9.57 84.03 0.80 -13.09 16 19 H 0.07 3.52 7.85 -2.90 -0.02 3.50 16 20 C -0.05 -2.76 5.04 84.86 0.43 -2.33 16 21 N -0.94 -56.04 11.09 21.65 0.24 -55.80 16 22 Si 0.96 45.13 29.57 68.60 2.03 47.15 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 C 0.20 9.72 4.99 86.37 0.43 10.16 16 27 C -0.14 -5.63 4.71 30.67 0.14 -5.49 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.40 6.27 -2.39 -0.01 1.38 16 32 H 0.05 1.13 7.45 -2.39 -0.02 1.11 16 33 H 0.07 2.36 6.21 -2.39 -0.01 2.34 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 10.24 6.15 -92.71 -0.57 9.67 16 36 H 0.21 3.61 7.51 -2.91 -0.02 3.59 16 37 H 0.21 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.10 2.11 6.35 -2.39 -0.02 2.10 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 41 H 0.03 0.91 6.88 -2.39 -0.02 0.89 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 43 H 0.04 2.26 6.14 -2.39 -0.01 2.25 16 44 H 0.00 -0.23 7.74 -2.39 -0.02 -0.25 16 45 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.06 2.60 6.25 -2.39 -0.01 2.58 16 Total: -1.00 -74.99 361.93 1.26 -73.73 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -1.46 Total: 22.58 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 6.73 Total: 16.24 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -4.39 Total: -125.27 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.65 Total: -34.44 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.99 1.26 -73.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150971118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.969 kcal (2) G-P(sol) polarization free energy of solvation -74.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds