Wall clock time and date at job start Sat Apr 11 2020 00:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99785 * 2 1 4 4 C 1.53002 * 109.46829 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47179 * 184.39204 * 4 3 2 6 6 N 1.46501 * 109.45724 * 303.06649 * 5 4 3 7 7 C 1.34775 * 120.00037 * 303.00264 * 6 5 4 8 8 O 1.21605 * 119.99813 * 355.03383 * 7 6 5 9 9 C 1.47410 * 119.99764 * 175.03347 * 7 6 5 10 10 N 1.31609 * 125.86540 * 0.31637 * 9 7 6 11 11 C 1.33107 * 109.09538 * 180.17040 * 10 9 7 12 12 C 1.35560 * 108.34386 * 359.55705 * 11 10 9 13 13 N 1.35394 * 107.16711 * 0.26791 * 12 11 10 14 14 H 0.97003 * 126.44111 * 179.97438 * 13 12 11 15 15 C 1.53042 * 109.44446 * 63.02870 * 5 4 3 16 16 C 1.53194 * 109.31127 * 181.37933 * 15 5 4 17 17 N 1.46930 * 108.77518 * 305.36613 * 16 15 5 18 18 C 1.36930 * 120.62850 * 233.62909 * 17 16 15 19 19 H 1.08001 * 120.00624 * 31.76786 * 18 17 16 20 20 C 1.38813 * 119.99927 * 211.75838 * 18 17 16 21 21 N 1.31623 * 119.99778 * 10.85133 * 20 18 17 22 22 Si 1.86801 * 120.00100 * 190.84544 * 20 18 17 23 23 H 1.48496 * 109.47187 * 60.00575 * 22 20 18 24 24 H 1.48507 * 109.47003 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47160 * 300.00351 * 22 20 18 26 26 C 1.46928 * 118.73782 * 53.60763 * 17 16 15 27 27 C 1.53031 * 109.46162 * 183.09055 * 5 4 3 28 28 H 1.09000 * 109.47459 * 60.00387 * 1 2 3 29 29 H 1.09006 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47438 * 299.99569 * 1 2 3 31 31 H 1.09003 * 109.47034 * 60.00522 * 3 2 1 32 32 H 1.08994 * 109.47211 * 299.99802 * 3 2 1 33 33 H 1.09007 * 109.46945 * 64.39617 * 4 3 2 34 34 H 1.08996 * 109.47694 * 304.39601 * 4 3 2 35 35 H 0.96998 * 119.99438 * 123.01332 * 6 5 4 36 36 H 1.07994 * 125.82516 * 179.82507 * 11 10 9 37 37 H 1.08007 * 126.41735 * 180.28463 * 12 11 10 38 38 H 1.09000 * 109.49936 * 301.33045 * 15 5 4 39 39 H 1.08997 * 109.49858 * 61.42717 * 15 5 4 40 40 H 1.08994 * 109.58651 * 185.57756 * 16 15 5 41 41 H 1.09004 * 109.58390 * 65.15289 * 16 15 5 42 42 H 0.97003 * 119.99735 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.58446 * 186.60155 * 26 17 16 44 44 H 1.08996 * 109.58428 * 66.17917 * 26 17 16 45 45 H 1.09004 * 109.50202 * 298.58006 * 27 5 4 46 46 H 1.09002 * 109.49719 * 58.67398 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1574 2.5782 0.1111 6 7 3.6747 3.4166 -0.9890 7 6 3.8574 3.0246 -2.2654 8 8 4.5013 2.0217 -2.5071 9 6 3.2768 3.8115 -3.3684 10 7 2.5685 4.9133 -3.2401 11 6 2.2091 5.3430 -4.4475 12 6 2.7148 4.4902 -5.3719 13 7 3.3868 3.5255 -4.7003 14 1 3.8575 2.7727 -5.0911 15 6 3.7582 3.2098 1.4467 16 6 4.3540 4.6181 1.5393 17 7 5.8046 4.5332 1.3215 18 6 6.6789 5.0675 2.2298 19 1 6.4232 5.0865 3.2790 20 6 7.8940 5.5847 1.8023 21 7 8.1195 5.7589 0.5173 22 14 9.2092 6.0336 3.0506 23 1 9.5869 4.8258 3.8277 24 1 10.4036 6.5612 2.3432 25 1 8.6824 7.0711 3.9733 26 6 6.2991 3.8636 0.1108 27 6 5.6815 2.4638 0.0342 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8463 -0.8899 33 1 3.8629 0.7130 -0.9260 34 1 3.8515 0.5774 0.8488 35 1 3.2237 4.2540 -0.7986 36 1 1.6194 6.2235 -4.6553 37 1 2.6028 4.5661 -6.4435 38 1 2.6717 3.2695 1.5107 39 1 4.1383 2.5995 2.2659 40 1 4.1566 5.0342 2.5271 41 1 3.9066 5.2550 0.7761 42 1 8.9685 6.1206 0.2185 43 1 7.3851 3.7820 0.1561 44 1 6.0104 4.4390 -0.7688 45 1 6.0436 1.8605 0.8667 46 1 5.9639 1.9925 -0.9071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151108170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:40 Heat of formation + Delta-G solvation = 3.433619 kcal Electronic energy + Delta-G solvation = -28936.734700 eV Core-core repulsion = 25056.374662 eV Total energy + Delta-G solvation = -3880.360039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22542 -40.14946 -37.81637 -37.21022 -34.57442 -32.94816 -32.00056 -31.44979 -30.16849 -29.54418 -28.75824 -26.52987 -24.90395 -23.75187 -23.11349 -22.03125 -21.59905 -20.82057 -20.20781 -18.79730 -18.60695 -16.90751 -16.40369 -16.35008 -15.95692 -15.48752 -15.12741 -14.85817 -14.61580 -14.22452 -13.98574 -13.96329 -13.83561 -13.62399 -13.37533 -13.12267 -12.99965 -12.62033 -12.30030 -11.66411 -11.50351 -11.40832 -11.05666 -11.03256 -10.82385 -10.69985 -10.42255 -10.33978 -10.32144 -10.22808 -10.02850 -9.91071 -9.73843 -9.43200 -9.25475 -8.78497 -8.52801 -8.43190 -6.56578 -5.73978 -3.22635 1.41058 2.61509 2.65556 3.40517 3.45984 3.46741 3.55198 3.64786 3.80144 4.38818 4.51849 4.88634 5.06014 5.12979 5.19475 5.25475 5.28666 5.32996 5.38404 5.38863 5.48649 5.52580 5.56773 5.64568 5.79061 5.87496 6.02781 6.15071 6.21759 6.36036 6.40911 6.46785 6.50734 6.69452 6.71340 6.79455 6.94230 7.02545 7.05557 7.20070 7.45073 7.62841 7.76590 7.82917 7.92696 8.39465 8.51835 9.26428 9.87854 10.46354 11.33629 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.004582 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.206255 B = 6109.564485 C = 7842.617155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.130 4.130 5 C 0.194 3.806 6 N -0.683 5.683 7 C 0.607 3.393 8 O -0.539 6.539 9 C 0.154 3.846 10 N -0.443 5.443 11 C -0.029 4.029 12 C -0.032 4.032 13 N -0.526 5.526 14 H 0.429 0.571 15 C -0.140 4.140 16 C 0.144 3.856 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.063 0.937 20 C 0.006 3.994 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.179 3.821 27 C -0.151 4.151 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.411 0.589 36 H 0.177 0.823 37 H 0.184 0.816 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.254 0.746 43 H 0.085 0.915 44 H 0.017 0.983 45 H 0.063 0.937 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.930 -6.366 -8.888 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.168 4.168 5 C 0.109 3.891 6 N -0.334 5.334 7 C 0.390 3.610 8 O -0.416 6.416 9 C -0.108 4.108 10 N -0.166 5.166 11 C -0.182 4.182 12 C -0.171 4.171 13 N -0.128 5.128 14 H 0.268 0.732 15 C -0.180 4.180 16 C 0.017 3.983 17 N -0.312 5.312 18 C -0.385 4.385 19 H 0.081 0.919 20 C -0.193 4.193 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.053 3.947 27 C -0.191 4.191 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.248 0.752 36 H 0.194 0.806 37 H 0.201 0.799 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.035 0.965 45 H 0.082 0.918 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.376 -6.810 -8.299 17.942 hybrid contribution 0.632 0.383 -0.527 0.908 sum -13.744 -6.427 -8.827 17.553 Atomic orbital electron populations 1.22689 0.81635 1.02295 0.99791 1.87869 1.19210 1.28740 1.95400 1.22616 0.94597 0.83975 0.99992 1.21991 0.92450 0.97616 1.04762 1.20319 0.95426 0.87977 0.85374 1.45797 1.58435 1.25143 1.04047 1.16408 0.79541 0.83311 0.81743 1.90772 1.40487 1.26316 1.84003 1.22923 1.05927 0.97463 0.84534 1.70240 1.11828 1.07764 1.26730 1.22486 1.05771 1.02289 0.87660 1.22931 1.01765 0.92746 0.99678 1.42954 1.39828 1.23039 1.06951 0.73159 1.22424 0.99462 1.00655 0.95455 1.20899 0.86509 0.91975 0.98906 1.43997 0.99089 1.64470 1.23684 1.19109 0.97886 1.32997 0.88467 0.91921 1.25168 0.99904 0.98396 0.95811 1.69984 1.24013 1.47767 1.12884 0.86363 0.81315 0.78344 0.80629 1.20993 1.21689 1.20901 1.20691 0.99391 0.86762 0.87828 1.22623 0.92301 1.02190 1.01954 0.94440 0.89970 0.94194 0.93039 0.93820 0.89264 0.90312 0.75234 0.80627 0.79878 0.92303 0.90272 0.92431 0.96473 0.93628 0.89655 0.96468 0.91813 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.62 10.70 -35.23 -0.38 -5.99 16 3 C 0.06 0.90 5.50 37.16 0.20 1.11 16 4 C -0.13 -2.02 4.32 -26.73 -0.12 -2.13 16 5 C 0.19 3.26 0.35 -131.78 -0.05 3.22 16 6 N -0.68 -11.27 3.35 -48.64 -0.16 -11.44 16 7 C 0.61 10.26 6.98 -12.53 -0.09 10.17 16 8 O -0.54 -9.94 13.36 5.27 0.07 -9.87 16 9 C 0.15 2.32 7.95 -154.52 -1.23 1.09 16 10 N -0.44 -6.64 10.90 -11.26 -0.12 -6.76 16 11 C -0.03 -0.33 11.85 -17.96 -0.21 -0.55 16 12 C -0.03 -0.30 12.00 -16.94 -0.20 -0.50 16 13 N -0.53 -6.08 6.14 -10.78 -0.07 -6.14 16 14 H 0.43 4.07 8.96 -40.82 -0.37 3.70 16 15 C -0.14 -2.29 4.72 -26.61 -0.13 -2.42 16 16 C 0.14 2.88 6.24 -3.71 -0.02 2.85 16 17 N -0.59 -14.49 2.98 -172.32 -0.51 -15.00 16 18 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 19 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 20 C 0.01 0.17 5.04 -17.43 -0.09 0.08 16 21 N -0.90 -26.42 11.09 55.49 0.62 -25.80 16 22 Si 0.90 21.78 29.57 -169.99 -5.03 16.75 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.18 4.33 4.99 -3.71 -0.02 4.32 16 27 C -0.15 -3.02 4.71 -26.62 -0.13 -3.14 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.67 6.27 -51.93 -0.33 0.34 16 32 H 0.04 0.63 7.46 -51.93 -0.39 0.24 16 33 H 0.09 1.55 6.21 -51.92 -0.32 1.22 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.41 6.70 6.87 -40.82 -0.28 6.42 16 36 H 0.18 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.06 0.81 6.35 -51.93 -0.33 0.48 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.02 0.35 6.88 -51.93 -0.36 -0.01 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.09 2.36 6.14 -51.93 -0.32 2.04 16 44 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.07 1.48 6.25 -51.93 -0.32 1.16 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -32.95 362.87 -7.97 -40.92 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.76 Total: 9.40 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -1.10 Total: 8.47 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -0.25 Total: -65.14 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.31 Total: -15.87 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.95 -7.97 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151108170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.355 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds