Wall clock time and date at job start Sat Apr 11 2020 00:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99785 * 2 1 4 4 C 1.53002 * 109.46829 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47179 * 184.39204 * 4 3 2 6 6 N 1.46501 * 109.45724 * 303.06649 * 5 4 3 7 7 C 1.34775 * 120.00037 * 303.00264 * 6 5 4 8 8 O 1.21605 * 119.99813 * 355.03383 * 7 6 5 9 9 C 1.47410 * 119.99764 * 175.03347 * 7 6 5 10 10 N 1.31609 * 125.86540 * 0.31637 * 9 7 6 11 11 C 1.33107 * 109.09538 * 180.17040 * 10 9 7 12 12 C 1.35560 * 108.34386 * 359.55705 * 11 10 9 13 13 N 1.35394 * 107.16711 * 0.26791 * 12 11 10 14 14 H 0.97003 * 126.44111 * 179.97438 * 13 12 11 15 15 C 1.53042 * 109.44446 * 63.02870 * 5 4 3 16 16 C 1.53194 * 109.31127 * 181.37933 * 15 5 4 17 17 N 1.46930 * 108.77518 * 305.36613 * 16 15 5 18 18 C 1.36930 * 120.62850 * 233.62909 * 17 16 15 19 19 H 1.08001 * 120.00624 * 31.76786 * 18 17 16 20 20 C 1.38813 * 119.99927 * 211.75838 * 18 17 16 21 21 N 1.31623 * 119.99778 * 10.85133 * 20 18 17 22 22 Si 1.86801 * 120.00100 * 190.84544 * 20 18 17 23 23 H 1.48496 * 109.47187 * 60.00575 * 22 20 18 24 24 H 1.48507 * 109.47003 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47160 * 300.00351 * 22 20 18 26 26 C 1.46928 * 118.73782 * 53.60763 * 17 16 15 27 27 C 1.53031 * 109.46162 * 183.09055 * 5 4 3 28 28 H 1.09000 * 109.47459 * 60.00387 * 1 2 3 29 29 H 1.09006 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47438 * 299.99569 * 1 2 3 31 31 H 1.09003 * 109.47034 * 60.00522 * 3 2 1 32 32 H 1.08994 * 109.47211 * 299.99802 * 3 2 1 33 33 H 1.09007 * 109.46945 * 64.39617 * 4 3 2 34 34 H 1.08996 * 109.47694 * 304.39601 * 4 3 2 35 35 H 0.96998 * 119.99438 * 123.01332 * 6 5 4 36 36 H 1.07994 * 125.82516 * 179.82507 * 11 10 9 37 37 H 1.08007 * 126.41735 * 180.28463 * 12 11 10 38 38 H 1.09000 * 109.49936 * 301.33045 * 15 5 4 39 39 H 1.08997 * 109.49858 * 61.42717 * 15 5 4 40 40 H 1.08994 * 109.58651 * 185.57756 * 16 15 5 41 41 H 1.09004 * 109.58390 * 65.15289 * 16 15 5 42 42 H 0.97003 * 119.99735 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.58446 * 186.60155 * 26 17 16 44 44 H 1.08996 * 109.58428 * 66.17917 * 26 17 16 45 45 H 1.09004 * 109.50202 * 298.58006 * 27 5 4 46 46 H 1.09002 * 109.49719 * 58.67398 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1574 2.5782 0.1111 6 7 3.6747 3.4166 -0.9890 7 6 3.8574 3.0246 -2.2654 8 8 4.5013 2.0217 -2.5071 9 6 3.2768 3.8115 -3.3684 10 7 2.5685 4.9133 -3.2401 11 6 2.2091 5.3430 -4.4475 12 6 2.7148 4.4902 -5.3719 13 7 3.3868 3.5255 -4.7003 14 1 3.8575 2.7727 -5.0911 15 6 3.7582 3.2098 1.4467 16 6 4.3540 4.6181 1.5393 17 7 5.8046 4.5332 1.3215 18 6 6.6789 5.0675 2.2298 19 1 6.4232 5.0865 3.2790 20 6 7.8940 5.5847 1.8023 21 7 8.1195 5.7589 0.5173 22 14 9.2092 6.0336 3.0506 23 1 9.5869 4.8258 3.8277 24 1 10.4036 6.5612 2.3432 25 1 8.6824 7.0711 3.9733 26 6 6.2991 3.8636 0.1108 27 6 5.6815 2.4638 0.0342 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8463 -0.8899 33 1 3.8629 0.7130 -0.9260 34 1 3.8515 0.5774 0.8488 35 1 3.2237 4.2540 -0.7986 36 1 1.6194 6.2235 -4.6553 37 1 2.6028 4.5661 -6.4435 38 1 2.6717 3.2695 1.5107 39 1 4.1383 2.5995 2.2659 40 1 4.1566 5.0342 2.5271 41 1 3.9066 5.2550 0.7761 42 1 8.9685 6.1206 0.2185 43 1 7.3851 3.7820 0.1561 44 1 6.0104 4.4390 -0.7688 45 1 6.0436 1.8605 0.8667 46 1 5.9639 1.9925 -0.9071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151108170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:39 Heat of formation + Delta-G solvation = -19.955238 kcal Electronic energy + Delta-G solvation = -28937.748917 eV Core-core repulsion = 25056.374662 eV Total energy + Delta-G solvation = -3881.374256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.18175 -41.50382 -38.99115 -38.58760 -36.26212 -34.08942 -33.45203 -32.97952 -31.81365 -30.65710 -30.21389 -27.67599 -26.44344 -24.99974 -24.61894 -23.62364 -22.48652 -22.15210 -21.61566 -20.09900 -19.88992 -18.71100 -17.59040 -17.47116 -17.03281 -16.81800 -16.53613 -16.37972 -15.75758 -15.61234 -15.38766 -15.24325 -15.09412 -14.85230 -14.79481 -14.50980 -14.31670 -13.94367 -13.84534 -13.20625 -13.01767 -12.79433 -12.71776 -12.58396 -12.29871 -12.24136 -12.09734 -11.94992 -11.80503 -11.52329 -11.32430 -11.31085 -11.29835 -10.82043 -10.54536 -10.52493 -10.08718 -9.51269 -8.58824 -7.83887 -5.35364 0.37548 1.47420 1.49794 1.56087 1.61305 1.69079 2.41319 2.52010 2.58824 2.78570 3.29589 3.32991 3.70898 3.77307 3.93976 4.08098 4.10330 4.16188 4.34564 4.37918 4.44339 4.48842 4.52293 4.53133 4.57822 4.68966 4.73918 4.82242 4.85919 4.99028 5.00368 5.04711 5.11732 5.16066 5.23700 5.35453 5.49287 5.57002 5.64914 5.66671 5.76697 6.18654 6.22854 6.42578 6.45200 6.85730 7.13631 7.17985 7.88177 8.41714 9.21469 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.004582 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.206255 B = 6109.564485 C = 7842.617155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.073 3.927 4 C -0.120 4.120 5 C 0.201 3.799 6 N -0.683 5.683 7 C 0.603 3.397 8 O -0.564 6.564 9 C 0.108 3.892 10 N -0.465 5.465 11 C -0.054 4.054 12 C 0.003 3.997 13 N -0.520 5.520 14 H 0.437 0.563 15 C -0.127 4.127 16 C 0.140 3.860 17 N -0.606 5.606 18 C -0.262 4.262 19 H 0.070 0.930 20 C -0.050 4.050 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.277 1.277 24 H -0.298 1.298 25 H -0.273 1.273 26 C 0.196 3.804 27 C -0.138 4.138 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.203 0.797 37 H 0.235 0.765 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.017 0.983 42 H 0.247 0.753 43 H 0.044 0.956 44 H -0.012 1.012 45 H 0.063 0.937 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.204 -6.538 -9.032 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.003 4.003 4 C -0.158 4.158 5 C 0.115 3.885 6 N -0.333 5.333 7 C 0.388 3.612 8 O -0.443 6.443 9 C -0.152 4.152 10 N -0.188 5.188 11 C -0.207 4.207 12 C -0.137 4.137 13 N -0.122 5.122 14 H 0.278 0.722 15 C -0.166 4.166 16 C 0.015 3.985 17 N -0.329 5.329 18 C -0.392 4.392 19 H 0.088 0.912 20 C -0.245 4.245 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.203 1.203 24 H -0.224 1.224 25 H -0.199 1.199 26 C 0.070 3.930 27 C -0.178 4.178 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.248 0.752 36 H 0.220 0.780 37 H 0.252 0.748 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.007 0.993 45 H 0.081 0.919 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.686 -7.004 -8.413 19.957 hybrid contribution 1.244 0.482 -0.612 1.468 sum -15.442 -6.522 -9.025 19.039 Atomic orbital electron populations 1.22921 0.79581 1.03817 1.00711 1.87828 1.21467 1.28661 1.95567 1.22460 0.93109 0.84249 1.00466 1.21806 0.93970 0.96136 1.03906 1.20166 0.92989 0.89256 0.86083 1.45730 1.58437 1.25073 1.04090 1.16697 0.79037 0.83157 0.82273 1.90743 1.41684 1.27478 1.84436 1.22489 1.08704 0.98638 0.85344 1.70156 1.11930 1.07823 1.28928 1.23127 1.06722 1.03807 0.86998 1.23784 0.98151 0.90240 1.01522 1.43053 1.39524 1.23601 1.06038 0.72190 1.22299 1.01407 0.97900 0.94975 1.21069 0.83888 0.94417 0.99143 1.44213 1.00960 1.64641 1.23103 1.19505 0.98484 1.31916 0.89299 0.91238 1.25933 1.02126 0.99073 0.97382 1.70174 1.24063 1.49302 1.14799 0.85337 0.78396 0.78233 0.78419 1.20340 1.22430 1.19861 1.20298 0.97129 0.88670 0.86926 1.22394 0.95002 0.99061 1.01325 0.93963 0.88275 0.92774 0.91388 0.94364 0.91271 0.89803 0.75162 0.77994 0.74846 0.88649 0.89924 0.91797 0.96492 0.94414 0.93763 0.99347 0.91875 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -11.12 10.70 -148.98 -1.59 -12.72 16 3 C 0.07 1.93 5.50 71.98 0.40 2.32 16 4 C -0.12 -3.65 4.32 30.60 0.13 -3.52 16 5 C 0.20 6.72 0.35 3.63 0.00 6.72 16 6 N -0.68 -22.82 3.35 -426.05 -1.43 -24.25 16 7 C 0.60 20.95 6.98 86.66 0.61 21.55 16 8 O -0.56 -21.62 13.36 -4.05 -0.05 -21.67 16 9 C 0.11 3.26 7.95 136.28 1.08 4.34 16 10 N -0.46 -13.67 10.90 -189.53 -2.07 -15.73 16 11 C -0.05 -1.12 11.85 83.88 0.99 -0.12 16 12 C 0.00 0.05 12.00 83.52 1.00 1.05 16 13 N -0.52 -11.33 6.14 -188.02 -1.16 -12.49 16 14 H 0.44 7.84 8.96 -92.71 -0.83 7.01 16 15 C -0.13 -3.93 4.72 30.67 0.14 -3.79 16 16 C 0.14 5.52 6.24 86.36 0.54 6.06 16 17 N -0.61 -30.32 2.98 -699.10 -2.09 -32.41 16 18 C -0.26 -14.39 9.58 84.03 0.80 -13.59 16 19 H 0.07 3.66 7.85 -2.91 -0.02 3.64 16 20 C -0.05 -2.83 5.04 84.86 0.43 -2.40 16 21 N -0.94 -57.08 11.09 21.65 0.24 -56.84 16 22 Si 0.97 45.52 29.57 68.60 2.03 47.55 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 26 C 0.20 9.94 4.99 86.36 0.43 10.37 16 27 C -0.14 -5.71 4.71 30.67 0.14 -5.57 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.55 6.27 -2.39 -0.01 1.53 16 32 H 0.04 1.05 7.46 -2.39 -0.02 1.03 16 33 H 0.07 2.42 6.21 -2.38 -0.01 2.41 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.41 13.52 6.87 -92.71 -0.64 12.88 16 36 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.24 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.10 2.32 6.35 -2.39 -0.02 2.30 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 41 H 0.02 0.68 6.88 -2.39 -0.02 0.67 16 42 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.04 2.59 6.14 -2.39 -0.01 2.58 16 44 H -0.01 -0.64 7.74 -2.39 -0.02 -0.66 16 45 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.06 2.68 6.25 -2.39 -0.01 2.66 16 Total: -1.00 -75.03 362.87 1.39 -73.64 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.45 Total: 29.76 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 7.95 Total: 25.16 kcal Atomic # 7 Polarization: -135.22 SS G_CDS: -6.49 Total: -141.71 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.65 Total: -34.39 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -75.03 1.39 -73.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151108170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.683 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds