Wall clock time and date at job start Sat Apr 11 2020 00:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47431 * 2 1 4 4 C 1.36943 * 119.99961 * 275.73337 * 3 2 1 5 5 H 1.07993 * 120.00212 * 33.26651 * 4 3 2 6 6 C 1.38810 * 119.99831 * 213.26702 * 4 3 2 7 7 N 1.31629 * 120.00317 * 17.26956 * 6 4 3 8 8 Si 1.86806 * 120.00184 * 197.27075 * 6 4 3 9 9 H 1.48495 * 109.47072 * 89.99794 * 8 6 4 10 10 H 1.48498 * 109.46973 * 210.00072 * 8 6 4 11 11 H 1.48503 * 109.46602 * 330.00168 * 8 6 4 12 12 C 1.46500 * 120.00160 * 95.73007 * 3 2 1 13 13 H 1.08996 * 109.47275 * 180.08676 * 12 3 2 14 14 C 1.53008 * 109.46980 * 60.09200 * 12 3 2 15 15 C 1.52999 * 109.47125 * 300.09137 * 12 3 2 16 16 N 1.46493 * 109.47221 * 304.99598 * 15 12 3 17 17 C 1.34778 * 120.00047 * 179.97438 * 16 15 12 18 18 O 1.21587 * 119.99758 * 0.02562 * 17 16 15 19 19 C 1.47537 * 119.99894 * 180.02562 * 17 16 15 20 20 C 1.39806 * 120.98162 * 0.02562 * 19 17 16 21 21 N 1.32187 * 118.98075 * 179.97438 * 20 19 17 22 22 C 1.31946 * 121.14060 * 0.02562 * 21 20 19 23 23 C 1.50696 * 118.90290 * 179.97438 * 22 21 20 24 24 N 1.31723 * 122.19269 * 0.02562 * 22 21 20 25 25 C 1.32770 * 120.87566 * 359.97438 * 24 22 21 26 26 O 1.35285 * 120.61247 * 180.27468 * 25 24 22 27 27 C 1.42893 * 117.00090 * 359.72760 * 26 25 24 28 28 H 1.08993 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47006 * 300.00221 * 1 2 3 30 30 H 1.09004 * 109.47057 * 59.99419 * 1 2 3 31 31 H 1.09004 * 109.47006 * 239.99779 * 2 1 3 32 32 H 1.08994 * 109.46992 * 120.00424 * 2 1 3 33 33 H 0.96996 * 120.00267 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47115 * 180.02562 * 14 12 3 35 35 H 1.09003 * 109.46451 * 300.00109 * 14 12 3 36 36 H 1.09001 * 109.46658 * 59.99852 * 14 12 3 37 37 H 1.09002 * 109.47150 * 184.99614 * 15 12 3 38 38 H 1.08998 * 109.47141 * 64.99907 * 15 12 3 39 39 H 0.97004 * 120.00036 * 0.02562 * 16 15 12 40 40 H 1.08001 * 120.50823 * 0.02562 * 20 19 17 41 41 H 1.09003 * 109.46819 * 89.99837 * 23 22 21 42 42 H 1.08992 * 109.47459 * 210.00345 * 23 22 21 43 43 H 1.09002 * 109.47278 * 330.00701 * 23 22 21 44 44 H 1.09006 * 109.46871 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.47067 * 299.99568 * 27 26 25 46 46 H 1.08996 * 109.47957 * 59.99655 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1350 2.0662 -1.1800 5 1 1.4371 1.8810 -1.9831 6 6 3.1502 2.9985 -1.3439 7 7 4.1873 2.9917 -0.5333 8 14 3.0447 4.2631 -2.7148 9 1 2.3490 5.4767 -2.2163 10 1 4.4141 4.6255 -3.1604 11 1 2.2870 3.6924 -3.8573 12 6 2.3821 2.0295 1.2624 13 1 2.7191 3.0470 1.0644 14 6 3.5079 1.2412 1.9348 15 6 1.1631 2.0667 2.1863 16 7 0.0468 2.7173 1.4959 17 6 -1.1388 2.8629 2.1202 18 8 -1.2816 2.4548 3.2566 19 6 -2.2632 3.5176 1.4247 20 6 -2.1218 3.9940 0.1179 21 7 -3.1554 4.5738 -0.4678 22 6 -4.3084 4.7079 0.1596 23 6 -5.4533 5.3774 -0.5559 24 7 -4.4917 4.2769 1.3907 25 6 -3.5098 3.6820 2.0577 26 8 -3.7057 3.2364 3.3199 27 6 -5.0008 3.4430 3.8872 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.8969 3.6430 -0.6481 34 1 3.7781 1.7233 2.8743 35 1 3.1708 0.2237 2.1328 36 1 4.3762 1.2147 1.2765 37 1 1.4081 2.6268 3.0887 38 1 0.8802 1.0492 2.4557 39 1 0.1606 3.0426 0.5892 40 1 -1.1828 3.8893 -0.4053 41 1 -6.0339 4.6277 -1.0935 42 1 -6.0920 5.8794 0.1707 43 1 -5.0620 6.1092 -1.2626 44 1 -5.0222 3.0403 4.9000 45 1 -5.2186 4.5106 3.9164 46 1 -5.7493 2.9360 3.2784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153768664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:43 Heat of formation + Delta-G solvation = -2.035557 kcal Electronic energy + Delta-G solvation = -28640.321628 eV Core-core repulsion = 24759.724428 eV Total energy + Delta-G solvation = -3880.597200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44059 -39.01135 -38.63831 -36.86521 -33.97301 -33.39211 -32.77019 -31.88752 -31.05048 -29.19402 -28.18930 -27.60491 -25.42198 -24.00408 -23.93827 -23.21962 -21.72209 -20.29620 -19.33105 -18.64898 -17.92654 -17.33983 -16.74791 -16.42399 -15.34114 -14.97626 -14.90114 -14.79984 -14.67580 -14.53181 -14.00880 -13.91469 -13.46298 -13.05669 -12.78607 -12.70249 -12.64184 -12.32433 -12.17738 -12.07815 -11.83670 -11.73089 -11.51551 -11.43317 -11.07511 -10.95870 -10.82739 -10.69178 -10.37388 -10.30162 -10.09217 -9.64732 -9.59543 -9.44468 -9.40766 -9.12077 -8.53675 -8.38881 -6.69183 -5.90290 -3.39483 0.45906 1.04962 2.76527 3.09559 3.30455 3.39874 3.40556 3.54491 3.75468 3.82657 3.94637 4.40353 4.67715 4.82833 5.06198 5.11965 5.12854 5.23941 5.28572 5.31122 5.35005 5.38978 5.45737 5.68656 5.89717 6.04937 6.09373 6.17912 6.25552 6.37548 6.47823 6.54305 6.61210 6.67710 6.68122 6.82889 6.90568 7.00713 7.04371 7.15582 7.46778 7.56414 7.75670 7.89564 8.09081 8.41074 8.67430 9.14137 9.75423 10.32805 11.16144 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.004476 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.546623 B = 6254.349821 C = 7573.326919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.266 4.266 5 H 0.065 0.935 6 C 0.013 3.987 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.278 1.278 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.696 5.696 17 C 0.561 3.439 18 O -0.535 6.535 19 C -0.261 4.261 20 C 0.217 3.783 21 N -0.542 5.542 22 C 0.368 3.632 23 C -0.087 4.087 24 N -0.582 5.582 25 C 0.410 3.590 26 O -0.263 6.263 27 C 0.032 3.968 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.255 0.745 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.408 0.592 40 H 0.184 0.816 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.244 2.609 3.733 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 N -0.305 5.305 4 C -0.395 4.395 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.021 4.021 16 N -0.347 5.347 17 C 0.345 3.655 18 O -0.413 6.413 19 C -0.270 4.270 20 C 0.052 3.948 21 N -0.261 5.261 22 C 0.102 3.898 23 C -0.145 4.145 24 N -0.314 5.314 25 C 0.222 3.778 26 O -0.163 6.163 27 C -0.063 4.063 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.245 0.755 40 H 0.201 0.799 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.721 2.669 4.346 16.527 hybrid contribution 0.563 0.432 -0.690 0.990 sum -15.158 3.101 3.657 15.898 Atomic orbital electron populations 1.22459 1.00098 0.99050 1.01466 1.20749 0.91588 0.87443 0.98761 1.43902 1.75991 1.08300 1.02273 1.19110 1.08744 1.18269 0.93423 0.91734 1.25161 0.94485 1.01312 0.97763 1.70006 1.07804 1.35827 1.39537 0.86427 0.77037 0.81958 0.82179 1.21234 1.21785 1.20288 1.20509 0.88867 0.99580 0.84194 0.88193 1.22019 1.01093 0.97967 0.99250 1.22204 0.87789 0.96332 0.95822 1.45855 1.10701 1.59252 1.18939 1.17522 0.82226 0.79806 0.85951 1.90783 1.82858 1.50043 1.17604 1.21077 0.95604 1.12200 0.98104 1.23591 0.97462 0.84836 0.88910 1.68324 1.00311 1.19434 1.37995 1.23170 0.92691 0.88365 0.85621 1.20639 0.93312 1.00576 0.99991 1.68021 1.33205 1.18644 1.11531 1.20098 0.88182 0.84595 0.84934 1.86547 1.34463 1.72645 1.22677 1.23026 0.82420 1.02257 0.98611 0.94864 0.92999 0.93498 0.94090 0.94485 0.93521 0.94817 0.95127 0.90261 0.92727 0.92619 0.75489 0.79934 0.89180 0.89556 0.89052 0.88078 0.92072 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.87 37.16 0.37 -2.71 16 2 C 0.14 2.80 5.67 -4.04 -0.02 2.77 16 3 N -0.58 -12.74 1.85 -165.66 -0.31 -13.05 16 4 C -0.27 -6.39 9.26 -15.06 -0.14 -6.53 16 5 H 0.06 1.56 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.33 4.85 -17.43 -0.08 0.24 16 7 N -0.89 -23.10 10.60 55.49 0.59 -22.51 16 8 Si 0.89 19.87 29.59 -169.99 -5.03 14.84 16 9 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.18 3.68 1.92 -67.93 -0.13 3.55 16 13 H 0.10 2.37 6.04 -51.93 -0.31 2.06 16 14 C -0.14 -2.89 9.05 37.16 0.34 -2.55 16 15 C 0.10 1.97 4.34 -4.05 -0.02 1.95 16 16 N -0.70 -12.59 3.94 -61.35 -0.24 -12.84 16 17 C 0.56 10.35 7.54 -12.47 -0.09 10.26 16 18 O -0.53 -11.30 15.32 -15.85 -0.24 -11.54 16 19 C -0.26 -4.28 5.92 -104.56 -0.62 -4.90 16 20 C 0.22 3.23 10.80 -16.81 -0.18 3.05 16 21 N -0.54 -7.78 10.31 -10.44 -0.11 -7.89 16 22 C 0.37 4.76 7.64 -157.13 -1.20 3.56 16 23 C -0.09 -0.73 10.31 36.00 0.37 -0.36 16 24 N -0.58 -8.11 9.26 -10.47 -0.10 -8.20 16 25 C 0.41 6.49 7.54 -16.19 -0.12 6.37 16 26 O -0.26 -4.11 8.73 -38.69 -0.34 -4.45 16 27 C 0.03 0.34 10.41 101.05 1.05 1.39 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.96 4.99 -51.93 -0.26 0.71 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.04 0.71 6.45 -51.93 -0.33 0.38 16 33 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 36 H 0.08 1.81 7.39 -51.93 -0.38 1.43 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.08 7.05 -51.93 -0.37 0.72 16 39 H 0.41 7.34 6.03 -40.82 -0.25 7.10 16 40 H 0.18 2.54 6.53 -52.49 -0.34 2.19 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 46 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -29.14 372.84 -7.43 -36.56 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.79 Total: 7.37 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: -0.49 Total: 16.08 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.16 Total: -64.49 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.58 Total: -15.99 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.14 -7.43 -36.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153768664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.528 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds