Wall clock time and date at job start Sat Apr 11 2020 00:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47568 * 2 1 4 4 C 1.36930 * 120.00208 * 275.73839 * 3 2 1 5 5 H 1.08008 * 120.00055 * 33.26372 * 4 3 2 6 6 C 1.38816 * 120.00098 * 213.26795 * 4 3 2 7 7 N 1.31618 * 119.99949 * 17.26150 * 6 4 3 8 8 Si 1.86800 * 119.99805 * 197.26548 * 6 4 3 9 9 H 1.48496 * 109.47383 * 90.00026 * 8 6 4 10 10 H 1.48505 * 109.46726 * 209.99823 * 8 6 4 11 11 H 1.48500 * 109.47441 * 329.99231 * 8 6 4 12 12 C 1.46503 * 119.99834 * 95.73012 * 3 2 1 13 13 H 1.09001 * 109.47050 * 180.08929 * 12 3 2 14 14 C 1.53000 * 109.46656 * 60.08881 * 12 3 2 15 15 C 1.53000 * 109.47220 * 300.09078 * 12 3 2 16 16 N 1.46503 * 109.47219 * 304.99985 * 15 12 3 17 17 C 1.34769 * 120.00023 * 180.02562 * 16 15 12 18 18 O 1.21555 * 120.00313 * 359.97438 * 17 16 15 19 19 C 1.47833 * 119.99882 * 179.97438 * 17 16 15 20 20 N 1.33018 * 120.14613 * 359.97438 * 19 17 16 21 21 C 1.31736 * 119.98988 * 179.97438 * 20 19 17 22 22 C 1.50696 * 119.85798 * 179.97438 * 21 20 19 23 23 C 1.38785 * 120.28661 * 0.02562 * 21 20 19 24 24 C 1.50704 * 119.85003 * 179.97438 * 23 21 20 25 25 N 1.32057 * 120.29963 * 0.23346 * 23 21 20 26 26 C 1.32642 * 120.00059 * 359.48687 * 25 23 21 27 27 O 1.35425 * 120.14478 * 180.23844 * 26 25 23 28 28 H 1.09000 * 109.46873 * 59.99525 * 1 2 3 29 29 H 1.08993 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46757 * 300.00017 * 1 2 3 31 31 H 1.09002 * 109.46865 * 240.00364 * 2 1 3 32 32 H 1.08993 * 109.47240 * 120.00571 * 2 1 3 33 33 H 0.96993 * 120.00079 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.47049 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.47430 * 299.99815 * 14 12 3 36 36 H 1.08999 * 109.47356 * 60.00112 * 14 12 3 37 37 H 1.08995 * 109.47082 * 184.99709 * 15 12 3 38 38 H 1.08998 * 109.47327 * 64.99788 * 15 12 3 39 39 H 0.97004 * 119.99346 * 359.97438 * 16 15 12 40 40 H 1.08996 * 109.47658 * 270.02716 * 22 21 20 41 41 H 1.09006 * 109.47140 * 30.02796 * 22 21 20 42 42 H 1.09005 * 109.47059 * 150.02403 * 22 21 20 43 43 H 1.08999 * 109.47297 * 89.99803 * 24 23 21 44 44 H 1.08998 * 109.47025 * 210.00047 * 24 23 21 45 45 H 1.09004 * 109.47186 * 330.00048 * 24 23 21 46 46 H 0.96709 * 113.99598 * 270.29683 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1350 2.0662 -1.1799 5 1 1.4370 1.8811 -1.9830 6 6 3.1502 2.9986 -1.3438 7 7 4.1872 2.9918 -0.5333 8 14 3.0446 4.2631 -2.7147 9 1 2.3489 5.4767 -2.2163 10 1 4.4140 4.6255 -3.1604 11 1 2.2870 3.6924 -3.8573 12 6 2.3821 2.0295 1.2624 13 1 2.7192 3.0470 1.0644 14 6 3.5078 1.2411 1.9348 15 6 1.1631 2.0667 2.1863 16 7 0.0467 2.7174 1.4959 17 6 -1.1384 2.8639 2.1205 18 8 -1.2813 2.4559 3.2566 19 6 -2.2648 3.5209 1.4240 20 7 -2.1115 3.9690 0.1810 21 6 -3.1174 4.5536 -0.4370 22 6 -2.9403 5.0606 -1.8450 23 6 -4.3393 4.7054 0.2035 24 6 -5.4832 5.3762 -0.5125 25 7 -4.5025 4.2694 1.4393 26 6 -3.4992 3.6741 2.0705 27 8 -3.6648 3.2216 3.3361 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.8968 3.6430 -0.6480 34 1 3.7787 1.7237 2.8739 35 1 3.1707 0.2236 2.1328 36 1 4.3762 1.2145 1.2766 37 1 1.4082 2.6267 3.0888 38 1 0.8802 1.0492 2.4558 39 1 0.1609 3.0433 0.5894 40 1 -2.5929 6.0933 -1.8184 41 1 -2.2065 4.4437 -2.3637 42 1 -3.8935 5.0113 -2.3715 43 1 -6.0640 4.6273 -1.0510 44 1 -6.1222 5.8782 0.2140 45 1 -5.0908 6.1083 -1.2184 46 1 -3.4512 3.8733 4.0179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153978578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:49 Heat of formation + Delta-G solvation = -31.993232 kcal Electronic energy + Delta-G solvation = -28786.871227 eV Core-core repulsion = 24904.974965 eV Total energy + Delta-G solvation = -3881.896262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63981 -40.52503 -38.90799 -38.42611 -35.85735 -35.18314 -34.30070 -33.70285 -32.68183 -30.12695 -29.85142 -28.72091 -26.97389 -25.78705 -24.66337 -24.02775 -23.31491 -21.64550 -21.01930 -19.91828 -19.39737 -18.96530 -18.35919 -17.30749 -16.93196 -16.60414 -16.40564 -15.88088 -15.66614 -15.50512 -15.13033 -14.75084 -14.35766 -14.20594 -14.02534 -13.95450 -13.86480 -13.78560 -13.52378 -13.34043 -13.15566 -12.95444 -12.84960 -12.79320 -12.71288 -12.59023 -12.56390 -12.40719 -12.04763 -12.01880 -11.87368 -11.38221 -11.35662 -11.18348 -10.41721 -10.21571 -10.09955 -9.82366 -8.52356 -7.80238 -5.30128 -0.83737 -0.20513 1.50978 1.53788 1.58933 1.60416 1.97056 2.29572 2.54344 2.56600 2.83369 3.10733 3.34073 3.49694 3.65558 3.77741 3.99034 4.02585 4.23032 4.42112 4.54122 4.64033 4.71354 4.73583 4.76542 4.78776 4.79408 4.83859 4.89504 4.92398 4.96270 5.03930 5.11610 5.19958 5.28637 5.39844 5.44890 5.54947 5.69513 5.76450 5.87613 5.94368 6.37230 6.47044 6.51849 6.65821 7.13375 7.26171 7.93387 8.45892 9.23804 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.004929 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.834412 B = 5679.565665 C = 7159.293974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.258 4.258 5 H 0.056 0.944 6 C -0.031 4.031 7 N -0.914 5.914 8 Si 0.951 3.049 9 H -0.285 1.285 10 H -0.301 1.301 11 H -0.272 1.272 12 C 0.183 3.817 13 H 0.070 0.930 14 C -0.134 4.134 15 C 0.111 3.889 16 N -0.679 5.679 17 C 0.563 3.437 18 O -0.557 6.557 19 C -0.010 4.010 20 N -0.412 5.412 21 C 0.065 3.935 22 C -0.103 4.103 23 C 0.137 3.863 24 C -0.106 4.106 25 N -0.477 5.477 26 C 0.310 3.690 27 O -0.464 6.464 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.248 0.752 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.415 0.585 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.373 6.118 -0.303 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.016 3.984 3 N -0.313 5.313 4 C -0.388 4.388 5 H 0.074 0.926 6 C -0.228 4.228 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.211 1.211 10 H -0.228 1.228 11 H -0.197 1.197 12 C 0.075 3.925 13 H 0.088 0.912 14 C -0.193 4.193 15 C -0.014 4.014 16 N -0.329 5.329 17 C 0.347 3.653 18 O -0.436 6.436 19 C -0.151 4.151 20 N -0.131 5.131 21 C -0.081 4.081 22 C -0.160 4.160 23 C -0.007 4.007 24 C -0.163 4.163 25 N -0.202 5.202 26 C 0.130 3.870 27 O -0.272 6.272 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.136 0.864 46 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -16.380 5.313 0.395 17.225 hybrid contribution 0.735 0.882 -0.461 1.237 sum -15.645 6.195 -0.066 16.827 Atomic orbital electron populations 1.22254 0.98674 1.00010 1.00430 1.20805 0.92492 0.86321 0.98811 1.43989 1.76067 1.09132 1.02098 1.19178 1.07731 1.18123 0.93788 0.92592 1.25686 0.94439 1.02855 0.99841 1.70133 1.08309 1.36350 1.41054 0.85519 0.76099 0.80148 0.80167 1.21140 1.22815 1.19691 1.20355 0.89808 0.98052 0.84267 0.91218 1.21873 0.99448 0.98761 0.99231 1.22056 0.87374 0.96469 0.95498 1.45834 1.10328 1.57492 1.19197 1.17768 0.82480 0.79594 0.85473 1.90744 1.83171 1.51386 1.18318 1.22247 0.94785 1.04360 0.93687 1.68265 1.32959 1.05532 1.06323 1.22905 0.89384 0.95865 0.99919 1.20968 1.05679 1.02479 0.86914 1.23087 0.96787 0.92158 0.88717 1.21099 0.93422 1.01259 1.00498 1.68069 1.31298 1.10087 1.10734 1.19970 0.87435 0.91002 0.88637 1.84688 1.89664 1.41388 1.11508 0.94606 0.92624 0.94103 0.94821 0.93479 0.94267 0.92991 0.93809 0.93135 0.92093 0.92640 0.74743 0.88086 0.90948 0.86115 0.87397 0.89204 0.86411 0.71814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 9.87 71.98 0.71 -5.08 16 2 C 0.14 5.80 5.67 86.38 0.49 6.29 16 3 N -0.59 -27.22 1.85 -678.02 -1.25 -28.47 16 4 C -0.26 -13.08 9.26 84.04 0.78 -12.30 16 5 H 0.06 2.88 7.89 -2.91 -0.02 2.86 16 6 C -0.03 -1.59 4.85 84.86 0.41 -1.18 16 7 N -0.91 -49.55 10.60 21.65 0.23 -49.32 16 8 Si 0.95 42.26 29.59 68.60 2.03 44.29 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 C 0.18 8.00 1.92 44.99 0.09 8.09 16 13 H 0.07 3.52 6.04 -2.39 -0.01 3.51 16 14 C -0.13 -5.49 9.05 71.98 0.65 -4.84 16 15 C 0.11 4.41 4.34 86.38 0.37 4.79 16 16 N -0.68 -26.91 3.98 -466.00 -1.85 -28.76 16 17 C 0.56 21.81 7.57 86.78 0.66 22.47 16 18 O -0.56 -23.17 15.16 17.02 0.26 -22.91 16 19 C -0.01 -0.35 6.77 41.98 0.28 -0.06 16 20 N -0.41 -13.24 9.62 -172.25 -1.66 -14.90 16 21 C 0.06 1.54 6.78 42.70 0.29 1.83 16 22 C -0.10 -1.60 9.36 71.23 0.67 -0.93 16 23 C 0.14 2.88 6.79 42.66 0.29 3.17 16 24 C -0.11 -1.04 9.36 71.24 0.67 -0.37 16 25 N -0.48 -12.84 10.44 -295.23 -3.08 -15.93 16 26 C 0.31 9.70 7.78 85.04 0.66 10.36 16 27 O -0.46 -13.93 11.64 -66.30 -0.77 -14.70 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.61 4.99 -2.39 -0.01 1.59 16 31 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 32 H 0.05 1.83 6.45 -2.39 -0.02 1.81 16 33 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 34 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.04 1.64 6.67 -2.39 -0.02 1.63 16 36 H 0.05 2.37 7.40 -2.39 -0.02 2.35 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.06 2.21 7.05 -2.39 -0.02 2.19 16 39 H 0.42 17.54 7.24 -92.71 -0.67 16.87 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.12 0.92 6.69 -2.38 -0.02 0.90 16 43 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 45 H 0.12 0.50 6.69 -2.38 -0.02 0.48 16 46 H 0.42 8.89 9.06 -74.05 -0.67 8.22 16 Total: -1.00 -66.90 371.27 0.60 -66.30 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.31 Total: 32.18 kcal Atomic # 6 Polarization: 25.20 SS G_CDS: 7.02 Total: 32.22 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -7.62 Total: -137.37 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.51 Total: -37.62 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -66.90 0.60 -66.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153978578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.304 kcal (2) G-P(sol) polarization free energy of solvation -66.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds