Wall clock time and date at job start Sat Apr 11 2020 00:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46856 * 2 1 4 4 C 1.37985 * 120.04915 * 100.71579 * 3 2 1 5 5 C 1.38303 * 120.17301 * 179.97438 * 4 3 2 6 6 C 1.38591 * 120.26696 * 359.97438 * 5 4 3 7 7 F 1.35103 * 119.94984 * 179.97438 * 6 5 4 8 8 C 1.38171 * 120.09168 * 359.72588 * 6 5 4 9 9 C 1.39552 * 120.04470 * 280.68956 * 3 2 1 10 10 C 1.47856 * 120.13530 * 0.02562 * 9 3 2 11 11 O 1.21547 * 119.99578 * 354.63927 * 10 9 3 12 12 N 1.34776 * 120.00050 * 174.63332 * 10 9 3 13 13 C 1.46496 * 119.99976 * 184.95952 * 12 10 9 14 14 C 1.52997 * 109.47239 * 181.48631 * 13 12 10 15 15 H 1.09004 * 109.47200 * 59.60305 * 14 13 12 16 16 C 1.52995 * 109.47129 * 179.60361 * 14 13 12 17 17 N 1.46502 * 109.47042 * 299.60717 * 14 13 12 18 18 C 1.36936 * 120.00097 * 113.11893 * 17 14 13 19 19 H 1.08000 * 119.99893 * 48.86747 * 18 17 14 20 20 C 1.38806 * 119.99873 * 229.13818 * 18 17 14 21 21 N 1.31617 * 120.00049 * 194.53686 * 20 18 17 22 22 Si 1.86808 * 120.00067 * 14.53715 * 20 18 17 23 23 H 1.48498 * 109.47015 * 95.83988 * 22 20 18 24 24 H 1.48498 * 109.46812 * 215.84011 * 22 20 18 25 25 H 1.48494 * 109.46856 * 335.83989 * 22 20 18 26 26 C 1.46500 * 119.99843 * 293.11667 * 17 14 13 27 27 C 1.53001 * 109.46954 * 269.08896 * 26 17 14 28 28 H 1.08996 * 109.47187 * 300.00425 * 1 2 3 29 29 H 1.08996 * 109.46697 * 60.00254 * 1 2 3 30 30 H 1.08999 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47187 * 239.99575 * 2 1 3 32 32 H 1.09005 * 109.46879 * 119.99505 * 2 1 3 33 33 H 1.07994 * 119.91280 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.86550 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.08511 * 180.29796 * 8 6 5 36 36 H 0.97004 * 120.00054 * 4.96593 * 12 10 9 37 37 H 1.08996 * 109.46775 * 61.48722 * 13 12 10 38 38 H 1.09000 * 109.47051 * 301.48852 * 13 12 10 39 39 H 1.08997 * 109.47354 * 299.99897 * 16 14 13 40 40 H 1.08993 * 109.47324 * 60.00258 * 16 14 13 41 41 H 1.09002 * 109.47171 * 180.02562 * 16 14 13 42 42 H 0.97002 * 120.00229 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.47199 * 29.08389 * 26 17 14 44 44 H 1.08995 * 109.47086 * 149.08831 * 26 17 14 45 45 H 1.08999 * 109.47632 * 305.32078 * 27 26 17 46 46 H 1.09002 * 109.47120 * 65.32635 * 27 26 17 47 47 H 1.09007 * 109.47153 * 185.31965 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4719 1.9983 1.1736 5 6 2.9339 3.3019 1.1764 6 6 2.9590 4.0367 0.0016 7 9 3.4111 5.3098 0.0118 8 6 2.5271 3.4673 -1.1810 9 6 2.0539 2.1543 -1.1870 10 6 1.5840 1.5406 -2.4475 11 8 1.2698 0.3667 -2.4716 12 7 1.5039 2.2828 -3.5696 13 6 0.9366 1.7056 -4.7907 14 6 0.9966 2.7379 -5.9183 15 1 2.0334 3.0254 -6.0930 16 6 0.4132 2.1317 -7.1962 17 7 0.2191 3.9205 -5.5396 18 6 0.8525 5.1143 -5.3184 19 1 1.5663 5.4882 -6.0375 20 6 0.5812 5.8410 -4.1673 21 7 0.9554 7.0998 -4.0803 22 14 -0.3150 5.0323 -2.7417 23 1 0.6748 4.5397 -1.7503 24 1 -1.2123 6.0233 -2.0951 25 1 -1.1199 3.8911 -3.2465 26 6 -1.2359 3.8259 -5.3976 27 6 -1.9014 4.1571 -6.7349 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.4553 1.4308 2.0922 34 1 3.2772 3.7488 2.0977 35 1 2.5513 4.0384 -2.0973 36 1 1.8219 3.1993 -3.5686 37 1 -0.1008 1.4234 -4.6112 38 1 1.5093 0.8229 -5.0753 39 1 0.9916 1.2519 -7.4780 40 1 -0.6236 1.8443 -7.0216 41 1 0.4563 2.8670 -7.9997 42 1 0.7662 7.6076 -3.2757 43 1 -1.5067 2.8135 -5.0981 44 1 -1.5736 4.5319 -4.6390 45 1 -1.5565 5.1314 -7.0810 46 1 -1.6383 3.3964 -7.4700 47 1 -2.9837 4.1793 -6.6066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154163098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:56 Heat of formation + Delta-G solvation = -31.088958 kcal Electronic energy + Delta-G solvation = -29132.672972 eV Core-core repulsion = 25230.895960 eV Total energy + Delta-G solvation = -3901.777012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.72242 -40.28606 -38.26506 -37.13037 -34.51992 -33.32878 -32.35780 -31.54595 -30.66429 -29.03371 -28.93260 -26.10649 -24.09420 -23.52583 -23.45166 -22.37309 -21.12109 -20.26183 -19.47311 -17.84110 -16.97358 -16.70106 -15.89038 -15.75608 -15.58524 -15.47243 -15.31829 -14.97103 -14.35623 -14.10575 -14.00934 -13.49318 -13.31537 -13.16334 -12.89960 -12.76222 -12.63603 -12.39270 -12.28800 -12.13867 -11.90385 -11.66505 -11.58858 -11.52093 -11.36203 -11.06937 -10.85483 -10.80444 -10.65155 -10.26429 -10.07061 -9.85566 -9.34671 -9.24550 -9.09364 -8.70111 -8.46765 -8.37022 -6.74831 -6.10485 -3.70212 0.78754 1.19034 2.95462 3.20371 3.40457 3.44029 3.56023 3.83531 4.28252 4.40849 4.63925 4.77492 4.86644 4.89953 5.09297 5.16264 5.25362 5.43199 5.47375 5.58620 5.60283 5.73276 5.76057 5.91707 5.95545 5.97145 6.01022 6.02424 6.07297 6.15229 6.16635 6.21217 6.22186 6.30959 6.36587 6.42565 6.55532 6.60796 6.66542 6.72374 6.84284 6.87774 6.95147 7.11125 7.93548 8.00942 8.38101 8.53925 8.91234 9.57311 10.05976 11.02910 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.005918 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.709952 B = 4730.141059 C = 6070.054973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C -0.033 4.033 4 C -0.110 4.110 5 C -0.128 4.128 6 C 0.081 3.919 7 F -0.135 7.135 8 C -0.097 4.097 9 C -0.113 4.113 10 C 0.553 3.447 11 O -0.540 6.540 12 N -0.703 5.703 13 C 0.104 3.896 14 C 0.155 3.845 15 H 0.077 0.923 16 C -0.156 4.156 17 N -0.599 5.599 18 C -0.279 4.279 19 H 0.073 0.927 20 C 0.046 3.954 21 N -0.896 5.896 22 Si 0.842 3.158 23 H -0.265 1.265 24 H -0.301 1.301 25 H -0.247 1.247 26 C 0.137 3.863 27 C -0.170 4.170 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.411 0.589 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.265 0.735 43 H 0.035 0.965 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 -11.408 6.819 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.034 4.034 4 C -0.128 4.128 5 C -0.147 4.147 6 C 0.062 3.938 7 F -0.114 7.114 8 C -0.117 4.117 9 C -0.116 4.116 10 C 0.340 3.660 11 O -0.420 6.420 12 N -0.355 5.355 13 C -0.022 4.022 14 C 0.047 3.953 15 H 0.095 0.905 16 C -0.215 4.215 17 N -0.322 5.322 18 C -0.408 4.408 19 H 0.091 0.909 20 C -0.156 4.156 21 N -0.535 5.535 22 Si 0.671 3.329 23 H -0.192 1.192 24 H -0.228 1.228 25 H -0.171 1.171 26 C 0.012 3.988 27 C -0.229 4.229 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.250 0.750 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.530 -11.979 6.855 13.887 hybrid contribution -0.413 0.834 0.904 1.297 sum 1.117 -11.146 7.759 13.626 Atomic orbital electron populations 1.21606 0.94545 1.01505 1.01572 1.20802 0.96694 0.91519 1.03740 1.20086 0.95266 0.96732 0.91352 1.20831 0.99783 0.94300 0.97888 1.21281 1.01126 0.95074 0.97202 1.17503 1.01420 0.80280 0.94571 1.91533 1.86700 1.35887 1.97235 1.21512 0.96791 0.94735 0.98619 1.19697 1.03543 0.93776 0.94562 1.18086 0.78421 0.86101 0.83363 1.90650 1.50506 1.15398 1.85435 1.46000 1.61718 1.17294 1.10470 1.22070 0.97991 0.96956 0.85194 1.20843 0.96766 0.86886 0.90793 0.90457 1.22211 1.00755 0.99976 0.98529 1.44120 1.00526 1.05990 1.81535 1.18725 1.24100 0.95401 1.02613 0.90918 1.25761 0.96939 0.95592 0.97336 1.69811 1.47866 1.07450 1.28382 0.87820 0.80971 0.80439 0.83652 1.19236 1.22842 1.17123 1.21289 0.84630 0.97996 0.94872 1.22440 0.98174 1.02173 1.00126 0.93750 0.92074 0.92611 0.87452 0.92073 0.84621 0.84512 0.83719 0.75035 0.92210 0.92040 0.93405 0.92772 0.92086 0.92541 0.94679 0.93014 0.92301 0.93393 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.44 37.16 0.35 -1.46 16 2 C -0.09 -1.20 5.34 -27.88 -0.15 -1.35 16 3 C -0.03 -0.48 5.17 -104.22 -0.54 -1.02 16 4 C -0.11 -1.35 9.65 -39.65 -0.38 -1.73 16 5 C -0.13 -1.67 10.02 -39.43 -0.40 -2.06 16 6 C 0.08 1.33 7.29 -39.48 -0.29 1.04 16 7 F -0.14 -2.35 17.26 2.25 0.04 -2.31 16 8 C -0.10 -1.70 7.07 -39.11 -0.28 -1.98 16 9 C -0.11 -1.91 5.87 -104.97 -0.62 -2.52 16 10 C 0.55 10.00 7.37 -12.32 -0.09 9.91 16 11 O -0.54 -10.05 11.89 5.32 0.06 -9.99 16 12 N -0.70 -12.88 4.51 -61.25 -0.28 -13.15 16 13 C 0.10 1.77 5.10 -4.05 -0.02 1.75 16 14 C 0.15 2.72 2.79 -67.93 -0.19 2.53 16 15 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 16 C -0.16 -2.31 7.94 37.15 0.30 -2.02 16 17 N -0.60 -12.56 1.52 -165.67 -0.25 -12.81 16 18 C -0.28 -7.02 9.24 -15.06 -0.14 -7.16 16 19 H 0.07 2.03 8.06 -52.49 -0.42 1.61 16 20 C 0.05 1.22 5.37 -17.43 -0.09 1.12 16 21 N -0.90 -25.79 13.97 55.49 0.78 -25.01 16 22 Si 0.84 19.78 23.70 -169.99 -4.03 15.76 16 23 H -0.27 -5.85 3.78 56.52 0.21 -5.64 16 24 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.25 -5.62 4.83 56.52 0.27 -5.34 16 26 C 0.14 2.79 3.68 -4.04 -0.01 2.77 16 27 C -0.17 -3.07 9.91 37.16 0.37 -2.71 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.99 6.60 -51.93 -0.34 0.64 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 1.60 5.82 -51.93 -0.30 1.30 16 32 H 0.06 0.65 7.99 -51.93 -0.42 0.23 16 33 H 0.14 1.22 8.03 -52.49 -0.42 0.80 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.15 2.73 5.59 -52.49 -0.29 2.44 16 36 H 0.41 8.01 4.37 -40.82 -0.18 7.83 16 37 H 0.06 1.07 6.95 -51.93 -0.36 0.71 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.79 6.35 -51.93 -0.33 0.46 16 41 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.03 0.67 6.67 -51.93 -0.35 0.33 16 44 H 0.05 1.17 4.18 -51.93 -0.22 0.95 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.05 0.78 5.66 -51.93 -0.29 0.49 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -28.34 357.19 -7.64 -35.97 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.16 Total: 11.06 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.18 Total: -4.89 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.25 Total: -50.98 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.06 Total: -9.99 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.03 Total: 15.76 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.34 -7.64 -35.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154163098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.883 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds