Wall clock time and date at job start Sat Apr 11 2020 00:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46856 * 2 1 4 4 C 1.37985 * 120.04915 * 100.71579 * 3 2 1 5 5 C 1.38303 * 120.17301 * 179.97438 * 4 3 2 6 6 C 1.38591 * 120.26696 * 359.97438 * 5 4 3 7 7 F 1.35103 * 119.94984 * 179.97438 * 6 5 4 8 8 C 1.38171 * 120.09168 * 359.72588 * 6 5 4 9 9 C 1.39552 * 120.04470 * 280.68956 * 3 2 1 10 10 C 1.47856 * 120.13530 * 0.02562 * 9 3 2 11 11 O 1.21547 * 119.99578 * 354.63927 * 10 9 3 12 12 N 1.34776 * 120.00050 * 174.63332 * 10 9 3 13 13 C 1.46496 * 119.99976 * 184.95952 * 12 10 9 14 14 C 1.52997 * 109.47239 * 181.48631 * 13 12 10 15 15 H 1.09004 * 109.47200 * 59.60305 * 14 13 12 16 16 C 1.52995 * 109.47129 * 179.60361 * 14 13 12 17 17 N 1.46502 * 109.47042 * 299.60717 * 14 13 12 18 18 C 1.36936 * 120.00097 * 113.11893 * 17 14 13 19 19 H 1.08000 * 119.99893 * 48.86747 * 18 17 14 20 20 C 1.38806 * 119.99873 * 229.13818 * 18 17 14 21 21 N 1.31617 * 120.00049 * 194.53686 * 20 18 17 22 22 Si 1.86808 * 120.00067 * 14.53715 * 20 18 17 23 23 H 1.48498 * 109.47015 * 95.83988 * 22 20 18 24 24 H 1.48498 * 109.46812 * 215.84011 * 22 20 18 25 25 H 1.48494 * 109.46856 * 335.83989 * 22 20 18 26 26 C 1.46500 * 119.99843 * 293.11667 * 17 14 13 27 27 C 1.53001 * 109.46954 * 269.08896 * 26 17 14 28 28 H 1.08996 * 109.47187 * 300.00425 * 1 2 3 29 29 H 1.08996 * 109.46697 * 60.00254 * 1 2 3 30 30 H 1.08999 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47187 * 239.99575 * 2 1 3 32 32 H 1.09005 * 109.46879 * 119.99505 * 2 1 3 33 33 H 1.07994 * 119.91280 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.86550 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.08511 * 180.29796 * 8 6 5 36 36 H 0.97004 * 120.00054 * 4.96593 * 12 10 9 37 37 H 1.08996 * 109.46775 * 61.48722 * 13 12 10 38 38 H 1.09000 * 109.47051 * 301.48852 * 13 12 10 39 39 H 1.08997 * 109.47354 * 299.99897 * 16 14 13 40 40 H 1.08993 * 109.47324 * 60.00258 * 16 14 13 41 41 H 1.09002 * 109.47171 * 180.02562 * 16 14 13 42 42 H 0.97002 * 120.00229 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.47199 * 29.08389 * 26 17 14 44 44 H 1.08995 * 109.47086 * 149.08831 * 26 17 14 45 45 H 1.08999 * 109.47632 * 305.32078 * 27 26 17 46 46 H 1.09002 * 109.47120 * 65.32635 * 27 26 17 47 47 H 1.09007 * 109.47153 * 185.31965 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4719 1.9983 1.1736 5 6 2.9339 3.3019 1.1764 6 6 2.9590 4.0367 0.0016 7 9 3.4111 5.3098 0.0118 8 6 2.5271 3.4673 -1.1810 9 6 2.0539 2.1543 -1.1870 10 6 1.5840 1.5406 -2.4475 11 8 1.2698 0.3667 -2.4716 12 7 1.5039 2.2828 -3.5696 13 6 0.9366 1.7056 -4.7907 14 6 0.9966 2.7379 -5.9183 15 1 2.0334 3.0254 -6.0930 16 6 0.4132 2.1317 -7.1962 17 7 0.2191 3.9205 -5.5396 18 6 0.8525 5.1143 -5.3184 19 1 1.5663 5.4882 -6.0375 20 6 0.5812 5.8410 -4.1673 21 7 0.9554 7.0998 -4.0803 22 14 -0.3150 5.0323 -2.7417 23 1 0.6748 4.5397 -1.7503 24 1 -1.2123 6.0233 -2.0951 25 1 -1.1199 3.8911 -3.2465 26 6 -1.2359 3.8259 -5.3976 27 6 -1.9014 4.1571 -6.7349 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.4553 1.4308 2.0922 34 1 3.2772 3.7488 2.0977 35 1 2.5513 4.0384 -2.0973 36 1 1.8219 3.1993 -3.5686 37 1 -0.1008 1.4234 -4.6112 38 1 1.5093 0.8229 -5.0753 39 1 0.9916 1.2519 -7.4780 40 1 -0.6236 1.8443 -7.0216 41 1 0.4563 2.8670 -7.9997 42 1 0.7662 7.6076 -3.2757 43 1 -1.5067 2.8135 -5.0981 44 1 -1.5736 4.5319 -4.6390 45 1 -1.5565 5.1314 -7.0810 46 1 -1.6383 3.3964 -7.4700 47 1 -2.9837 4.1793 -6.6066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154163098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:55 Heat of formation + Delta-G solvation = -46.879749 kcal Electronic energy + Delta-G solvation = -29133.357712 eV Core-core repulsion = 25230.895960 eV Total energy + Delta-G solvation = -3902.461752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.00133 -41.55723 -39.58548 -38.64348 -35.89696 -34.63332 -34.09238 -32.97850 -32.00102 -30.65264 -30.13717 -27.40502 -25.71497 -24.95958 -24.56966 -23.96166 -22.26855 -21.60194 -20.98188 -19.15648 -18.83653 -17.95115 -17.46009 -17.09025 -16.97569 -16.76515 -16.65702 -16.51093 -15.80050 -15.39169 -15.20763 -14.93289 -14.73657 -14.57651 -14.38818 -14.18191 -14.03408 -13.81174 -13.61328 -13.50298 -13.25526 -13.10279 -13.04094 -12.79050 -12.65638 -12.41392 -12.33440 -12.05345 -11.98226 -11.88759 -11.75030 -11.48235 -11.10047 -10.64004 -10.61292 -10.18482 -9.93643 -9.61197 -8.57642 -8.20225 -5.76188 -0.38300 0.02279 1.30001 1.45016 1.48767 1.71872 2.21238 2.40498 2.60209 3.06879 3.10205 3.31408 3.54503 3.62210 3.74874 3.97273 4.03985 4.16132 4.31779 4.38546 4.40524 4.50397 4.55340 4.57557 4.68350 4.73432 4.75368 4.78878 4.82499 4.87373 4.94505 4.99559 5.02328 5.07808 5.09938 5.15404 5.21760 5.30017 5.33421 5.43298 5.53768 5.58236 5.61562 5.74769 5.96432 6.27648 6.48996 7.04498 7.13466 7.61318 8.10554 8.96433 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.005918 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.709952 B = 4730.141059 C = 6070.054973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.035 4.035 4 C -0.092 4.092 5 C -0.111 4.111 6 C 0.057 3.943 7 F -0.149 7.149 8 C -0.119 4.119 9 C -0.133 4.133 10 C 0.551 3.449 11 O -0.547 6.547 12 N -0.713 5.713 13 C 0.110 3.890 14 C 0.153 3.847 15 H 0.067 0.933 16 C -0.146 4.146 17 N -0.604 5.604 18 C -0.254 4.254 19 H 0.036 0.964 20 C 0.001 3.999 21 N -0.945 5.945 22 Si 0.897 3.103 23 H -0.249 1.249 24 H -0.327 1.327 25 H -0.233 1.233 26 C 0.133 3.867 27 C -0.160 4.160 28 H 0.057 0.943 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.183 0.817 34 H 0.173 0.827 35 H 0.118 0.882 36 H 0.403 0.597 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.259 0.741 43 H 0.054 0.946 44 H 0.026 0.974 45 H 0.031 0.969 46 H 0.068 0.932 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -14.725 8.799 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.124 4.124 3 C -0.037 4.037 4 C -0.110 4.110 5 C -0.130 4.130 6 C 0.038 3.962 7 F -0.128 7.128 8 C -0.139 4.139 9 C -0.136 4.136 10 C 0.339 3.661 11 O -0.428 6.428 12 N -0.364 5.364 13 C -0.015 4.015 14 C 0.047 3.953 15 H 0.085 0.915 16 C -0.205 4.205 17 N -0.328 5.328 18 C -0.384 4.384 19 H 0.054 0.946 20 C -0.197 4.197 21 N -0.588 5.588 22 Si 0.726 3.274 23 H -0.175 1.175 24 H -0.257 1.257 25 H -0.157 1.157 26 C 0.008 3.992 27 C -0.220 4.220 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.201 0.799 34 H 0.190 0.810 35 H 0.136 0.864 36 H 0.240 0.760 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.038 -15.361 8.810 17.738 hybrid contribution -0.218 1.797 0.235 1.826 sum 0.820 -13.563 9.046 16.323 Atomic orbital electron populations 1.21584 0.94743 1.02141 1.00559 1.20802 0.96393 0.90634 1.04601 1.20435 0.94706 0.97303 0.91207 1.21338 0.97134 0.93896 0.98613 1.21694 0.99240 0.95024 0.97023 1.17855 1.02588 0.80225 0.95576 1.91494 1.87041 1.36919 1.97339 1.21360 0.98885 0.95310 0.98345 1.19725 1.04955 0.93822 0.95117 1.18329 0.78101 0.86014 0.83689 1.90641 1.50948 1.15560 1.85675 1.46140 1.62064 1.17008 1.11194 1.22026 0.98018 0.97043 0.84453 1.20956 0.96028 0.85870 0.92461 0.91487 1.22102 1.01455 1.00645 0.96305 1.44156 1.01202 1.05768 1.81681 1.18497 1.22417 0.96496 1.01023 0.94636 1.26231 0.98284 0.95690 0.99447 1.69946 1.50893 1.09141 1.28857 0.86966 0.79883 0.79181 0.81389 1.17460 1.25684 1.15686 1.21311 0.83986 0.98314 0.95568 1.22320 0.99334 1.01233 0.99070 0.92366 0.95400 0.91201 0.89423 0.88367 0.79942 0.80985 0.86436 0.75977 0.92562 0.90204 0.90499 0.92008 0.92802 0.93155 0.92775 0.95575 0.94991 0.91272 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.44 71.98 0.68 -2.51 16 2 C -0.09 -2.01 5.34 29.85 0.16 -1.85 16 3 C -0.04 -0.92 5.17 -19.61 -0.10 -1.02 16 4 C -0.09 -1.83 9.65 22.23 0.21 -1.62 16 5 C -0.11 -2.51 10.02 22.37 0.22 -2.29 16 6 C 0.06 1.80 7.29 22.34 0.16 1.97 16 7 F -0.15 -5.26 17.26 44.97 0.78 -4.48 16 8 C -0.12 -4.24 7.07 22.58 0.16 -4.08 16 9 C -0.13 -4.41 5.87 -20.09 -0.12 -4.53 16 10 C 0.55 19.70 7.37 86.79 0.64 20.34 16 11 O -0.55 -19.86 11.89 -3.86 -0.05 -19.91 16 12 N -0.71 -26.20 4.51 -465.98 -2.10 -28.30 16 13 C 0.11 3.62 5.10 86.38 0.44 4.06 16 14 C 0.15 5.30 2.79 44.99 0.13 5.42 16 15 H 0.07 2.45 7.90 -2.38 -0.02 2.43 16 16 C -0.15 -4.01 7.94 71.98 0.57 -3.44 16 17 N -0.60 -25.54 1.52 -678.05 -1.03 -26.57 16 18 C -0.25 -13.32 9.24 84.03 0.78 -12.55 16 19 H 0.04 2.12 8.06 -2.91 -0.02 2.10 16 20 C 0.00 0.07 5.37 84.86 0.46 0.52 16 21 N -0.95 -57.55 13.97 21.65 0.30 -57.25 16 22 Si 0.90 42.96 23.70 68.60 1.63 44.58 16 23 H -0.25 -11.16 3.78 99.48 0.38 -10.78 16 24 H -0.33 -17.04 7.11 99.48 0.71 -16.33 16 25 H -0.23 -10.49 4.83 99.48 0.48 -10.01 16 26 C 0.13 5.29 3.68 86.38 0.32 5.61 16 27 C -0.16 -5.59 9.91 71.98 0.71 -4.87 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.03 0.84 6.60 -2.39 -0.02 0.83 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 2.42 5.82 -2.39 -0.01 2.40 16 32 H 0.10 1.55 7.99 -2.38 -0.02 1.53 16 33 H 0.18 1.98 8.03 -2.91 -0.02 1.96 16 34 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.12 4.73 5.59 -2.91 -0.02 4.71 16 36 H 0.40 16.23 4.37 -92.71 -0.41 15.82 16 37 H 0.06 1.91 6.95 -2.39 -0.02 1.89 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.61 6.35 -2.39 -0.02 1.60 16 41 H 0.05 1.56 7.97 -2.39 -0.02 1.54 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.05 1.96 6.67 -2.39 -0.02 1.95 16 44 H 0.03 1.17 4.18 -2.39 -0.01 1.16 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.07 2.10 5.66 -2.39 -0.01 2.08 16 47 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -66.08 357.19 4.97 -61.11 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.03 Total: 31.66 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.42 Total: -0.85 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -2.83 Total: -112.12 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.63 Total: 44.58 kcal Total: -66.08 4.97 -61.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154163098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.227 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds