Wall clock time and date at job start Sat Apr 11 2020 00:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47650 * 2 1 4 4 C 1.36936 * 120.00035 * 275.73525 * 3 2 1 5 5 H 1.07998 * 120.00379 * 33.26934 * 4 3 2 6 6 C 1.38815 * 119.99744 * 213.26541 * 4 3 2 7 7 N 1.31616 * 120.00415 * 17.26441 * 6 4 3 8 8 Si 1.86812 * 119.99672 * 197.26419 * 6 4 3 9 9 H 1.48499 * 109.47036 * 90.00185 * 8 6 4 10 10 H 1.48497 * 109.46701 * 210.00163 * 8 6 4 11 11 H 1.48497 * 109.47134 * 330.00162 * 8 6 4 12 12 C 1.46503 * 120.00188 * 95.72854 * 3 2 1 13 13 H 1.08995 * 109.47610 * 180.08593 * 12 3 2 14 14 C 1.53001 * 109.46812 * 60.09033 * 12 3 2 15 15 C 1.52996 * 109.47308 * 300.09438 * 12 3 2 16 16 N 1.46504 * 109.46956 * 304.99734 * 15 12 3 17 17 C 1.34774 * 120.00011 * 180.02562 * 16 15 12 18 18 O 1.21662 * 120.00054 * 359.97438 * 17 16 15 19 19 C 1.46928 * 119.99849 * 179.97438 * 17 16 15 20 20 C 1.41696 * 126.56193 * 359.97150 * 19 17 16 21 21 N 1.30558 * 108.19308 * 179.97438 * 20 19 17 22 22 N 1.39355 * 109.06273 * 359.95958 * 21 20 19 23 23 C 1.35148 * 108.46247 * 0.09932 * 22 21 20 24 24 O 1.35460 * 123.87059 * 179.86123 * 23 22 21 25 25 C 1.43539 * 115.05533 * 344.47398 * 24 23 22 26 26 C 1.53252 * 109.23014 * 46.88449 * 25 24 23 27 27 C 1.46791 * 127.97454 * 180.16901 * 22 21 20 28 28 H 1.09005 * 109.46979 * 300.00298 * 1 2 3 29 29 H 1.09004 * 109.46758 * 59.99490 * 1 2 3 30 30 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46979 * 239.99702 * 2 1 3 32 32 H 1.08997 * 109.47072 * 120.00419 * 2 1 3 33 33 H 0.96996 * 119.99890 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47477 * 59.99942 * 14 12 3 35 35 H 1.08997 * 109.47496 * 180.02562 * 14 12 3 36 36 H 1.09004 * 109.47245 * 300.00012 * 14 12 3 37 37 H 1.09004 * 109.47148 * 184.99751 * 15 12 3 38 38 H 1.08997 * 109.47616 * 64.99310 * 15 12 3 39 39 H 0.96999 * 119.99745 * 359.97438 * 16 15 12 40 40 H 1.08003 * 125.90360 * 359.95559 * 20 19 17 41 41 H 1.09001 * 109.52062 * 166.82193 * 25 24 23 42 42 H 1.08997 * 109.51828 * 286.94339 * 25 24 23 43 43 H 1.09004 * 109.50741 * 55.84928 * 26 25 24 44 44 H 1.08991 * 109.50877 * 175.98454 * 26 25 24 45 45 H 1.08994 * 109.76167 * 282.50299 * 27 22 21 46 46 H 1.09002 * 109.76134 * 43.20920 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1350 2.0661 -1.1800 5 1 1.4370 1.8811 -1.9831 6 6 3.1502 2.9985 -1.3438 7 7 4.1872 2.9917 -0.5333 8 14 3.0447 4.2630 -2.7148 9 1 2.3490 5.4766 -2.2164 10 1 4.4141 4.6253 -3.1604 11 1 2.2871 3.6923 -3.8574 12 6 2.3820 2.0295 1.2624 13 1 2.7192 3.0470 1.0644 14 6 3.5077 1.2411 1.9348 15 6 1.1631 2.0667 2.1863 16 7 0.0467 2.7173 1.4958 17 6 -1.1385 2.8639 2.1205 18 8 -1.2815 2.4556 3.2576 19 6 -2.2579 3.5169 1.4282 20 6 -2.2458 4.0416 0.1120 21 7 -3.4268 4.5377 -0.1399 22 7 -4.2423 4.3609 0.9762 23 6 -3.5244 3.7370 1.9363 24 8 -4.0159 3.4138 3.1565 25 6 -5.2400 4.0734 3.5129 26 6 -6.2202 3.9877 2.3381 27 6 -5.6454 4.7593 1.1418 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.8967 3.6430 -0.6480 34 1 4.3762 1.2145 1.2767 35 1 3.7781 1.7232 2.8743 36 1 3.1707 0.2236 2.1329 37 1 1.4082 2.6268 3.0888 38 1 0.8802 1.0492 2.4558 39 1 0.1609 3.0432 0.5894 40 1 -1.4047 4.0330 -0.5655 41 1 -5.6748 3.5872 4.3862 42 1 -5.0366 5.1195 3.7420 43 1 -6.3656 2.9436 2.0607 44 1 -7.1757 4.4242 2.6286 45 1 -5.7042 5.8307 1.3331 46 1 -6.2069 4.5147 0.2401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154170131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:59 Heat of formation + Delta-G solvation = 29.620273 kcal Electronic energy + Delta-G solvation = -28688.605735 eV Core-core repulsion = 24809.381235 eV Total energy + Delta-G solvation = -3879.224500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89819 -38.98540 -38.42344 -36.70905 -34.84358 -33.43225 -31.80537 -31.27288 -30.81493 -29.58195 -28.06880 -26.63513 -25.53895 -23.86549 -23.44423 -22.20995 -21.57830 -20.04769 -19.73154 -19.18483 -18.15174 -16.95114 -16.74503 -16.42268 -15.64593 -15.37211 -15.11523 -14.84825 -14.64737 -14.57076 -14.42625 -13.72595 -13.58392 -13.30436 -12.99615 -12.70958 -12.58936 -12.20835 -12.10687 -11.88620 -11.78554 -11.69801 -11.50253 -11.39410 -10.98140 -10.88055 -10.82435 -10.74197 -10.53774 -10.22188 -9.98905 -9.53694 -9.34320 -9.28254 -9.23429 -8.46464 -8.43284 -8.06098 -6.59239 -5.81609 -3.29974 1.62309 2.02141 2.33213 2.85350 3.36237 3.45050 3.45581 3.76235 3.95261 4.03621 4.10955 4.39585 4.47307 4.49652 4.78574 4.82977 4.98718 5.08342 5.23130 5.30558 5.33479 5.47972 5.48845 5.73512 6.00342 6.06893 6.17301 6.32096 6.38461 6.49041 6.50558 6.61060 6.65651 6.74090 6.79308 6.92865 7.01372 7.14828 7.27308 7.28743 7.54830 7.58679 7.66829 7.83960 8.41594 8.50564 9.02258 9.23311 9.84985 10.42569 11.24918 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.004002 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.831878 B = 6995.296015 C = 7960.135349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.142 3.858 3 N -0.582 5.582 4 C -0.261 4.261 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.293 1.293 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.106 3.894 16 N -0.699 5.699 17 C 0.588 3.412 18 O -0.561 6.561 19 C -0.295 4.295 20 C 0.109 3.891 21 N -0.288 5.288 22 N -0.403 5.403 23 C 0.329 3.671 24 O -0.262 6.262 25 C 0.043 3.957 26 C -0.177 4.177 27 C 0.129 3.871 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.408 0.592 40 H 0.201 0.799 41 H 0.122 0.878 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.418 3.274 5.532 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.219 1.219 11 H -0.204 1.204 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.020 4.020 16 N -0.349 5.349 17 C 0.375 3.625 18 O -0.442 6.442 19 C -0.310 4.310 20 C -0.080 4.080 21 N -0.110 5.110 22 N -0.197 5.197 23 C 0.157 3.843 24 O -0.166 6.166 25 C -0.032 4.032 26 C -0.216 4.216 27 C 0.009 3.991 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.245 0.755 40 H 0.218 0.782 41 H 0.139 0.861 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.108 0.892 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.118 3.532 5.718 20.266 hybrid contribution 0.265 0.568 -0.647 0.901 sum -18.853 4.100 5.071 19.949 Atomic orbital electron populations 1.22454 0.99938 0.98893 1.01745 1.20740 0.91707 0.87420 0.98595 1.43879 1.75944 1.08297 1.02283 1.19105 1.08500 1.18123 0.93374 0.91805 1.25140 0.94543 1.01352 0.97765 1.70007 1.07864 1.35879 1.39595 0.86428 0.76922 0.82064 0.82175 1.21274 1.21903 1.20392 1.20493 0.88951 0.99445 0.84187 0.88264 1.22021 1.01144 0.97975 0.99201 1.22113 0.87986 0.96207 0.95679 1.45686 1.10622 1.59654 1.18927 1.16930 0.81754 0.78601 0.85228 1.90748 1.83427 1.51730 1.18286 1.19305 0.93118 1.20738 0.97822 1.24195 0.95713 0.93642 0.94420 1.77083 1.02709 1.26066 1.05151 1.48970 1.11128 1.48848 1.10752 1.19714 0.90270 0.92279 0.82057 1.86762 1.39479 1.63061 1.27342 1.23213 0.82907 0.99028 0.98097 1.22673 1.00686 1.03264 0.94942 1.21927 0.76863 1.00149 1.00187 0.92705 0.93468 0.95066 0.94250 0.94575 0.93621 0.90367 0.94888 0.95191 0.93096 0.92959 0.75527 0.78242 0.86054 0.90787 0.89138 0.87086 0.89236 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 9.87 37.16 0.37 -2.85 16 2 C 0.14 2.92 5.67 -4.05 -0.02 2.90 16 3 N -0.58 -13.21 1.85 -165.67 -0.31 -13.51 16 4 C -0.26 -6.47 9.26 -15.06 -0.14 -6.61 16 5 H 0.06 1.59 7.89 -52.49 -0.41 1.17 16 6 C 0.01 0.31 4.85 -17.43 -0.08 0.22 16 7 N -0.89 -23.69 10.60 55.49 0.59 -23.10 16 8 Si 0.89 20.28 29.59 -169.99 -5.03 15.25 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.18 3.85 1.92 -67.93 -0.13 3.72 16 13 H 0.10 2.44 6.04 -51.93 -0.31 2.13 16 14 C -0.14 -3.00 9.05 37.16 0.34 -2.67 16 15 C 0.11 2.12 4.34 -4.04 -0.02 2.11 16 16 N -0.70 -13.51 3.98 -61.54 -0.24 -13.75 16 17 C 0.59 11.66 7.56 -12.74 -0.10 11.57 16 18 O -0.56 -12.75 16.53 2.88 0.05 -12.71 16 19 C -0.30 -5.13 6.14 -105.07 -0.64 -5.78 16 20 C 0.11 1.69 11.51 -16.77 -0.19 1.50 16 21 N -0.29 -4.35 12.54 30.97 0.39 -3.96 16 22 N -0.40 -5.31 4.04 -60.47 -0.24 -5.55 16 23 C 0.33 5.13 7.50 -16.10 -0.12 5.01 16 24 O -0.26 -3.78 10.18 -20.41 -0.21 -3.99 16 25 C 0.04 0.34 7.01 37.29 0.26 0.60 16 26 C -0.18 -1.01 6.17 -26.33 -0.16 -1.17 16 27 C 0.13 1.00 7.40 -3.62 -0.03 0.97 16 28 H 0.05 1.08 4.99 -51.93 -0.26 0.82 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.04 0.72 6.45 -51.93 -0.33 0.39 16 33 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.08 1.84 7.40 -51.93 -0.38 1.45 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.08 7.05 -51.93 -0.37 0.71 16 39 H 0.41 7.86 6.85 -40.82 -0.28 7.58 16 40 H 0.20 2.78 7.51 -52.48 -0.39 2.38 16 41 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -31.94 367.53 -7.02 -38.96 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.87 Total: 7.29 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -0.67 Total: 9.53 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.18 Total: -59.88 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.16 Total: -16.70 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.94 -7.02 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154170131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.584 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds