Wall clock time and date at job start Sat Apr 11 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47650 * 2 1 4 4 C 1.36936 * 120.00035 * 275.73525 * 3 2 1 5 5 H 1.07998 * 120.00379 * 33.26934 * 4 3 2 6 6 C 1.38815 * 119.99744 * 213.26541 * 4 3 2 7 7 N 1.31616 * 120.00415 * 17.26441 * 6 4 3 8 8 Si 1.86812 * 119.99672 * 197.26419 * 6 4 3 9 9 H 1.48499 * 109.47036 * 90.00185 * 8 6 4 10 10 H 1.48497 * 109.46701 * 210.00163 * 8 6 4 11 11 H 1.48497 * 109.47134 * 330.00162 * 8 6 4 12 12 C 1.46503 * 120.00188 * 95.72854 * 3 2 1 13 13 H 1.08995 * 109.47610 * 180.08593 * 12 3 2 14 14 C 1.53001 * 109.46812 * 60.09033 * 12 3 2 15 15 C 1.52996 * 109.47308 * 300.09438 * 12 3 2 16 16 N 1.46504 * 109.46956 * 304.99734 * 15 12 3 17 17 C 1.34774 * 120.00011 * 180.02562 * 16 15 12 18 18 O 1.21662 * 120.00054 * 359.97438 * 17 16 15 19 19 C 1.46928 * 119.99849 * 179.97438 * 17 16 15 20 20 C 1.41696 * 126.56193 * 359.97150 * 19 17 16 21 21 N 1.30558 * 108.19308 * 179.97438 * 20 19 17 22 22 N 1.39355 * 109.06273 * 359.95958 * 21 20 19 23 23 C 1.35148 * 108.46247 * 0.09932 * 22 21 20 24 24 O 1.35460 * 123.87059 * 179.86123 * 23 22 21 25 25 C 1.43539 * 115.05533 * 344.47398 * 24 23 22 26 26 C 1.53252 * 109.23014 * 46.88449 * 25 24 23 27 27 C 1.46791 * 127.97454 * 180.16901 * 22 21 20 28 28 H 1.09005 * 109.46979 * 300.00298 * 1 2 3 29 29 H 1.09004 * 109.46758 * 59.99490 * 1 2 3 30 30 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46979 * 239.99702 * 2 1 3 32 32 H 1.08997 * 109.47072 * 120.00419 * 2 1 3 33 33 H 0.96996 * 119.99890 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47477 * 59.99942 * 14 12 3 35 35 H 1.08997 * 109.47496 * 180.02562 * 14 12 3 36 36 H 1.09004 * 109.47245 * 300.00012 * 14 12 3 37 37 H 1.09004 * 109.47148 * 184.99751 * 15 12 3 38 38 H 1.08997 * 109.47616 * 64.99310 * 15 12 3 39 39 H 0.96999 * 119.99745 * 359.97438 * 16 15 12 40 40 H 1.08003 * 125.90360 * 359.95559 * 20 19 17 41 41 H 1.09001 * 109.52062 * 166.82193 * 25 24 23 42 42 H 1.08997 * 109.51828 * 286.94339 * 25 24 23 43 43 H 1.09004 * 109.50741 * 55.84928 * 26 25 24 44 44 H 1.08991 * 109.50877 * 175.98454 * 26 25 24 45 45 H 1.08994 * 109.76167 * 282.50299 * 27 22 21 46 46 H 1.09002 * 109.76134 * 43.20920 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1350 2.0661 -1.1800 5 1 1.4370 1.8811 -1.9831 6 6 3.1502 2.9985 -1.3438 7 7 4.1872 2.9917 -0.5333 8 14 3.0447 4.2630 -2.7148 9 1 2.3490 5.4766 -2.2164 10 1 4.4141 4.6253 -3.1604 11 1 2.2871 3.6923 -3.8574 12 6 2.3820 2.0295 1.2624 13 1 2.7192 3.0470 1.0644 14 6 3.5077 1.2411 1.9348 15 6 1.1631 2.0667 2.1863 16 7 0.0467 2.7173 1.4958 17 6 -1.1385 2.8639 2.1205 18 8 -1.2815 2.4556 3.2576 19 6 -2.2579 3.5169 1.4282 20 6 -2.2458 4.0416 0.1120 21 7 -3.4268 4.5377 -0.1399 22 7 -4.2423 4.3609 0.9762 23 6 -3.5244 3.7370 1.9363 24 8 -4.0159 3.4138 3.1565 25 6 -5.2400 4.0734 3.5129 26 6 -6.2202 3.9877 2.3381 27 6 -5.6454 4.7593 1.1418 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.8967 3.6430 -0.6480 34 1 4.3762 1.2145 1.2767 35 1 3.7781 1.7232 2.8743 36 1 3.1707 0.2236 2.1329 37 1 1.4082 2.6268 3.0888 38 1 0.8802 1.0492 2.4558 39 1 0.1609 3.0432 0.5894 40 1 -1.4047 4.0330 -0.5655 41 1 -5.6748 3.5872 4.3862 42 1 -5.0366 5.1195 3.7420 43 1 -6.3656 2.9436 2.0607 44 1 -7.1757 4.4242 2.6286 45 1 -5.7042 5.8307 1.3331 46 1 -6.2069 4.5147 0.2401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154170131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:58 Heat of formation + Delta-G solvation = 8.398235 kcal Electronic energy + Delta-G solvation = -28689.525992 eV Core-core repulsion = 24809.381235 eV Total energy + Delta-G solvation = -3880.144757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.94660 -40.37732 -39.57774 -38.43265 -35.63827 -35.10085 -33.65475 -32.74189 -31.89545 -30.80958 -29.84444 -27.48581 -26.94204 -25.72603 -24.47052 -23.42795 -23.22345 -21.16505 -20.98226 -20.71322 -19.37012 -18.60478 -17.91435 -17.49906 -17.00306 -16.65005 -16.32669 -16.13595 -16.02020 -15.81918 -15.49855 -15.27680 -15.11162 -14.53697 -14.37031 -14.24390 -13.89629 -13.68770 -13.46168 -13.38027 -13.11148 -12.73474 -12.69499 -12.66717 -12.58991 -12.49579 -12.32038 -12.14625 -11.99702 -11.84278 -11.75387 -11.29243 -11.10999 -10.80344 -10.36600 -10.29541 -9.89650 -9.42925 -8.46545 -7.75454 -5.25370 0.47676 1.08085 1.08923 1.54997 1.59197 1.64495 1.99907 2.51752 2.55071 2.61173 3.17191 3.39004 3.50222 3.68046 3.72935 3.90980 3.98813 4.08941 4.25587 4.29418 4.37888 4.50258 4.52180 4.57752 4.60150 4.66569 4.76076 4.87020 4.88512 4.95398 4.99419 5.04663 5.09265 5.12197 5.27233 5.36911 5.37917 5.61773 5.68430 5.76908 5.84088 5.94497 6.17372 6.42067 6.56929 6.87198 7.30773 7.48307 7.99222 8.52361 9.28674 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.004002 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.831878 B = 6995.296015 C = 7960.135349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.259 4.259 5 H 0.063 0.937 6 C -0.030 4.030 7 N -0.915 5.915 8 Si 0.950 3.050 9 H -0.283 1.283 10 H -0.304 1.304 11 H -0.273 1.273 12 C 0.184 3.816 13 H 0.071 0.929 14 C -0.135 4.135 15 C 0.119 3.881 16 N -0.695 5.695 17 C 0.590 3.410 18 O -0.597 6.597 19 C -0.333 4.333 20 C 0.108 3.892 21 N -0.298 5.298 22 N -0.392 5.392 23 C 0.334 3.666 24 O -0.291 6.291 25 C 0.027 3.973 26 C -0.164 4.164 27 C 0.113 3.887 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.247 0.753 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.409 0.591 40 H 0.208 0.792 41 H 0.146 0.854 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.157 0.843 45 H 0.112 0.888 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.281 3.770 5.557 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.016 3.984 3 N -0.313 5.313 4 C -0.390 4.390 5 H 0.080 0.920 6 C -0.227 4.227 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.210 1.210 10 H -0.232 1.232 11 H -0.198 1.198 12 C 0.077 3.923 13 H 0.089 0.911 14 C -0.194 4.194 15 C -0.007 4.007 16 N -0.345 5.345 17 C 0.379 3.621 18 O -0.480 6.480 19 C -0.348 4.348 20 C -0.081 4.081 21 N -0.120 5.120 22 N -0.187 5.187 23 C 0.159 3.841 24 O -0.196 6.196 25 C -0.046 4.046 26 C -0.202 4.202 27 C -0.005 4.005 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.245 0.755 40 H 0.224 0.776 41 H 0.164 0.836 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.175 0.825 45 H 0.130 0.870 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.033 4.031 5.731 23.120 hybrid contribution 1.008 0.409 -0.590 1.237 sum -21.025 4.440 5.141 22.095 Atomic orbital electron populations 1.22265 0.98281 1.00045 1.00933 1.20803 0.92815 0.86284 0.98536 1.43996 1.76074 1.09141 1.02057 1.19264 1.07894 1.17959 0.93857 0.91965 1.25681 0.94463 1.02917 0.99639 1.70139 1.08378 1.36343 1.41071 0.85552 0.76029 0.80262 0.80236 1.20966 1.23153 1.19778 1.20331 0.89748 0.97975 0.84275 0.91078 1.21885 0.99626 0.98761 0.99157 1.21871 0.87567 0.96106 0.95191 1.45616 1.10520 1.59545 1.18785 1.17234 0.82127 0.77962 0.84796 1.90708 1.84031 1.53488 1.19795 1.19208 0.93571 1.23025 0.98964 1.24252 0.96279 0.93580 0.93941 1.77008 1.02706 1.26052 1.06194 1.49376 1.12489 1.47443 1.09365 1.19705 0.90112 0.91421 0.82864 1.86735 1.42206 1.63922 1.26709 1.23728 0.81310 0.99617 0.99989 1.22693 1.01653 1.02971 0.92878 1.22541 0.74105 1.01901 1.01999 0.93697 0.93991 0.92910 0.94973 0.93901 0.94330 0.93190 0.93258 0.93976 0.93119 0.93272 0.75497 0.77590 0.83621 0.89669 0.89873 0.82512 0.86982 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.72 9.87 71.98 0.71 -5.01 16 2 C 0.14 5.76 5.67 86.38 0.49 6.25 16 3 N -0.59 -26.91 1.85 -678.06 -1.25 -28.16 16 4 C -0.26 -12.89 9.26 84.03 0.78 -12.11 16 5 H 0.06 3.08 7.89 -2.91 -0.02 3.06 16 6 C -0.03 -1.51 4.85 84.86 0.41 -1.10 16 7 N -0.92 -49.59 10.60 21.65 0.23 -49.37 16 8 Si 0.95 42.05 29.59 68.60 2.03 44.08 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 12 C 0.18 8.11 1.92 44.99 0.09 8.19 16 13 H 0.07 3.59 6.04 -2.39 -0.01 3.57 16 14 C -0.13 -5.65 9.05 71.98 0.65 -5.00 16 15 C 0.12 4.81 4.34 86.38 0.37 5.18 16 16 N -0.70 -27.28 3.98 -466.85 -1.86 -29.14 16 17 C 0.59 23.78 7.56 86.52 0.65 24.44 16 18 O -0.60 -27.60 16.53 -1.99 -0.03 -27.63 16 19 C -0.33 -11.64 6.14 -20.15 -0.12 -11.76 16 20 C 0.11 3.34 11.51 85.74 0.99 4.33 16 21 N -0.30 -8.64 12.54 -55.94 -0.70 -9.35 16 22 N -0.39 -9.64 4.04 -456.70 -1.85 -11.48 16 23 C 0.33 10.15 7.50 84.18 0.63 10.78 16 24 O -0.29 -8.13 10.18 -85.34 -0.87 -9.00 16 25 C 0.03 0.36 7.01 72.07 0.51 0.87 16 26 C -0.16 -1.25 6.17 30.85 0.19 -1.05 16 27 C 0.11 1.37 7.40 86.50 0.64 2.01 16 28 H 0.04 1.74 4.99 -2.38 -0.01 1.73 16 29 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.03 1.35 8.09 -2.38 -0.02 1.33 16 32 H 0.04 1.68 6.45 -2.39 -0.02 1.66 16 33 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 34 H 0.05 2.37 7.40 -2.39 -0.02 2.36 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.04 1.62 6.67 -2.38 -0.02 1.60 16 37 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.05 2.03 7.05 -2.39 -0.02 2.01 16 39 H 0.41 16.00 6.85 -92.71 -0.64 15.37 16 40 H 0.21 5.78 7.51 -2.91 -0.02 5.75 16 41 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.16 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 46 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -70.27 367.53 3.05 -67.21 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.36 Total: 26.80 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 6.99 Total: 26.02 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -5.43 Total: -127.49 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.90 Total: -36.62 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -70.27 3.05 -67.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154170131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.613 kcal (2) G-P(sol) polarization free energy of solvation -70.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds