Wall clock time and date at job start Sat Apr 11 2020 00:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47120 * 2 1 4 4 C 1.36937 * 120.00164 * 84.46546 * 3 2 1 5 5 H 1.07999 * 119.99837 * 32.76897 * 4 3 2 6 6 C 1.38809 * 120.00235 * 213.04625 * 4 3 2 7 7 N 1.31627 * 119.99907 * 10.99747 * 6 4 3 8 8 Si 1.86794 * 120.00010 * 191.00725 * 6 4 3 9 9 H 1.48500 * 109.47517 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47340 * 119.99954 * 8 6 4 11 11 H 1.48506 * 109.46902 * 239.99691 * 8 6 4 12 12 C 1.46507 * 120.00034 * 264.46700 * 3 2 1 13 13 H 1.08999 * 109.47189 * 183.43134 * 12 3 2 14 14 C 1.52997 * 109.47032 * 63.42560 * 12 3 2 15 15 C 1.53004 * 109.47008 * 303.42601 * 12 3 2 16 16 N 1.46499 * 109.46980 * 305.00301 * 15 12 3 17 17 C 1.34780 * 119.99869 * 180.02562 * 16 15 12 18 18 O 1.21671 * 120.00108 * 5.03639 * 17 16 15 19 19 C 1.46812 * 119.99779 * 185.04713 * 17 16 15 20 20 C 1.36353 * 125.85110 * 4.96404 * 19 17 16 21 21 C 1.41309 * 107.00873 * 179.85637 * 20 19 17 22 22 C 1.47388 * 126.46469 * 180.19541 * 21 20 19 23 23 N 1.34781 * 119.99535 * 0.25428 * 22 21 20 24 24 O 1.21603 * 120.00217 * 180.25910 * 22 21 20 25 25 C 1.38212 * 107.07233 * 0.41005 * 21 20 19 26 26 N 1.34258 * 108.39770 * 359.74905 * 25 21 20 27 27 C 1.46507 * 125.38790 * 179.97438 * 26 25 21 28 28 H 1.09003 * 109.46536 * 299.99934 * 1 2 3 29 29 H 1.08995 * 109.47057 * 59.99596 * 1 2 3 30 30 H 1.09001 * 109.46846 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46536 * 240.00066 * 2 1 3 32 32 H 1.09001 * 109.47461 * 120.00496 * 2 1 3 33 33 H 0.96991 * 119.99889 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47122 * 300.00101 * 14 12 3 35 35 H 1.09000 * 109.47114 * 60.00380 * 14 12 3 36 36 H 1.09002 * 109.46975 * 180.02562 * 14 12 3 37 37 H 1.08998 * 109.47397 * 64.99850 * 15 12 3 38 38 H 1.08996 * 109.46918 * 185.00088 * 15 12 3 39 39 H 0.97000 * 120.00640 * 359.97438 * 16 15 12 40 40 H 1.07995 * 126.49780 * 359.96519 * 20 19 17 41 41 H 0.97000 * 120.00284 * 359.97438 * 23 22 21 42 42 H 0.97000 * 119.99775 * 180.02562 * 23 22 21 43 43 H 1.08004 * 125.79725 * 179.72561 * 25 21 20 44 44 H 1.08994 * 109.47242 * 273.43501 * 27 26 25 45 45 H 1.09001 * 109.47259 * 33.44491 * 27 26 25 46 46 H 1.09007 * 109.46570 * 153.43704 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1388 2.0649 1.1804 5 1 2.3985 1.5370 2.0860 6 6 1.9213 3.4354 1.2139 7 7 1.3927 4.0436 0.1731 8 14 2.3791 4.4167 2.7360 9 1 2.9512 3.5051 3.7592 10 1 3.3834 5.4495 2.3756 11 1 1.1661 5.0756 3.2835 12 6 2.3779 2.0310 -1.2629 13 1 2.7743 3.0259 -1.0596 14 6 1.1354 2.1480 -2.1480 15 6 3.4395 1.1962 -1.9819 16 7 4.5810 0.9836 -1.0885 17 6 5.6438 0.2706 -1.5112 18 8 5.6964 -0.1184 -2.6629 19 6 6.7380 -0.0368 -0.5819 20 6 6.7602 0.2545 0.7500 21 6 7.9921 -0.2179 1.2560 22 6 8.4581 -0.1283 2.6514 23 7 7.6763 0.4457 3.5873 24 8 9.5479 -0.5721 2.9582 25 6 8.6797 -0.7754 0.1946 26 7 7.9210 -0.6636 -0.9074 27 6 8.2925 -1.1333 -2.2445 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.2412 5.0013 0.1965 34 1 0.7391 1.1532 -2.3512 35 1 0.3791 2.7428 -1.6358 36 1 1.4030 2.6311 -3.0878 37 1 3.0147 0.2329 -2.2640 38 1 3.7714 1.7230 -2.8765 39 1 4.5723 1.3565 -0.1931 40 1 5.9828 0.7505 1.3121 41 1 6.8072 0.8002 3.3425 42 1 7.9831 0.5050 4.5056 43 1 9.6608 -1.2243 0.2434 44 1 8.8651 -0.3594 -2.7554 45 1 8.8979 -2.0356 -2.1575 46 1 7.3906 -1.3546 -2.8154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154186396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:02 Heat of formation + Delta-G solvation = -11.906012 kcal Electronic energy + Delta-G solvation = -28228.806993 eV Core-core repulsion = 24347.781778 eV Total energy + Delta-G solvation = -3881.025215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63150 -39.13056 -38.55866 -36.89880 -34.16339 -33.64325 -32.63157 -31.90960 -31.02394 -29.41541 -28.36187 -26.95389 -25.53368 -24.01553 -23.10422 -21.97190 -21.63066 -19.86848 -19.57139 -19.07531 -18.11304 -16.98375 -16.71142 -16.21590 -15.78756 -15.41416 -15.39820 -14.80498 -14.68541 -14.37678 -14.02912 -13.96774 -13.59381 -13.54396 -13.28754 -12.77214 -12.54619 -12.41596 -12.31467 -12.25873 -11.92775 -11.62779 -11.46486 -11.30519 -11.05362 -10.89780 -10.52462 -10.31416 -10.11357 -10.00389 -9.64377 -9.63269 -9.60295 -9.55926 -8.92004 -8.67064 -8.58798 -8.24436 -6.73234 -5.91980 -3.42777 1.52495 1.81194 2.55022 3.26644 3.34629 3.37323 3.42971 3.59264 3.67594 3.85246 4.36576 4.72060 4.82811 4.94875 5.10867 5.14222 5.24069 5.26071 5.33504 5.52422 5.75558 5.83878 5.90667 6.06020 6.10695 6.28167 6.40353 6.46560 6.49823 6.52814 6.66794 6.69547 6.70868 6.75565 6.87293 6.93496 6.98256 7.01232 7.23629 7.44975 7.49714 7.58785 7.72060 8.01200 8.37347 8.37980 8.55718 9.11790 9.71854 10.28105 11.14517 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.004582 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.274870 B = 6109.349102 C = 7782.765950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.584 5.584 4 C -0.259 4.259 5 H 0.066 0.934 6 C 0.010 3.990 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.178 3.822 13 H 0.106 0.894 14 C -0.142 4.142 15 C 0.103 3.897 16 N -0.687 5.687 17 C 0.579 3.421 18 O -0.566 6.566 19 C -0.043 4.043 20 C -0.104 4.104 21 C -0.242 4.242 22 C 0.599 3.401 23 N -0.851 5.851 24 O -0.563 6.563 25 C 0.088 3.912 26 N -0.401 5.401 27 C 0.058 3.942 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.254 0.746 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.413 0.587 40 H 0.155 0.845 41 H 0.405 0.595 42 H 0.402 0.598 43 H 0.181 0.819 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.034 -6.863 -1.419 11.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.084 0.916 6 C -0.190 4.190 7 N -0.538 5.538 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.070 3.930 13 H 0.123 0.877 14 C -0.201 4.201 15 C -0.023 4.023 16 N -0.336 5.336 17 C 0.365 3.635 18 O -0.448 6.448 19 C -0.155 4.155 20 C -0.129 4.129 21 C -0.251 4.251 22 C 0.386 3.614 23 N -0.413 5.413 24 O -0.443 6.443 25 C -0.054 4.054 26 N -0.072 5.072 27 C -0.082 4.082 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.250 0.750 40 H 0.173 0.827 41 H 0.234 0.766 42 H 0.232 0.768 43 H 0.198 0.802 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.735 -7.393 -2.605 12.498 hybrid contribution -0.348 1.023 1.459 1.816 sum 9.387 -6.370 -1.145 11.402 Atomic orbital electron populations 1.22391 0.99810 0.98337 1.02083 1.20802 0.91911 0.87640 0.98059 1.43969 1.73917 1.09799 1.02848 1.19183 1.41533 0.90244 0.87930 0.91628 1.25198 0.98453 0.98256 0.97049 1.69942 1.45071 1.09296 1.29481 0.86297 0.77812 0.80179 0.82858 1.20211 1.21620 1.21778 1.20541 0.90798 0.96682 0.84960 0.87655 1.22120 1.00565 0.99463 0.98000 1.22207 0.86667 1.00685 0.92702 1.45644 1.16656 1.52049 1.19293 1.17012 0.81540 0.78923 0.86015 1.90703 1.80165 1.55205 1.18748 1.19903 0.90598 1.10014 0.94934 1.21332 0.97443 1.01354 0.92755 1.19408 0.98073 1.14088 0.93570 1.17367 0.83445 0.76136 0.84413 1.43657 1.22455 1.63201 1.12010 1.90779 1.21773 1.49421 1.82349 1.22244 0.97323 1.01369 0.84425 1.43626 1.12934 1.41775 1.08887 1.22458 1.04503 1.00312 0.80963 0.92918 0.93158 0.95405 0.94557 0.94532 0.93575 0.95268 0.90014 0.95224 0.92741 0.92492 0.74989 0.82710 0.76612 0.76791 0.80163 0.90355 0.89829 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 10.02 37.16 0.37 -2.71 16 2 C 0.14 2.70 5.73 -4.04 -0.02 2.67 16 3 N -0.58 -12.18 1.83 -165.66 -0.30 -12.48 16 4 C -0.26 -5.97 9.50 -15.06 -0.14 -6.11 16 5 H 0.07 1.51 7.85 -52.49 -0.41 1.09 16 6 C 0.01 0.24 5.01 -17.43 -0.09 0.15 16 7 N -0.89 -22.53 9.95 55.49 0.55 -21.98 16 8 Si 0.90 19.29 29.57 -169.99 -5.03 14.26 16 9 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.18 3.58 1.91 -67.93 -0.13 3.45 16 13 H 0.11 2.44 5.98 -51.93 -0.31 2.13 16 14 C -0.14 -2.80 8.22 37.16 0.31 -2.49 16 15 C 0.10 1.84 4.86 -4.04 -0.02 1.82 16 16 N -0.69 -11.65 5.36 -61.58 -0.33 -11.98 16 17 C 0.58 9.70 7.77 -12.79 -0.10 9.60 16 18 O -0.57 -10.53 14.50 5.21 0.08 -10.45 16 19 C -0.04 -0.63 6.82 -82.40 -0.56 -1.19 16 20 C -0.10 -1.39 9.74 -39.09 -0.38 -1.77 16 21 C -0.24 -3.21 6.13 -105.02 -0.64 -3.85 16 22 C 0.60 8.19 8.09 -12.53 -0.10 8.08 16 23 N -0.85 -8.80 8.87 30.42 0.27 -8.53 16 24 O -0.56 -9.42 17.74 5.27 0.09 -9.32 16 25 C 0.09 1.07 11.18 -16.50 -0.18 0.88 16 26 N -0.40 -5.06 3.12 -120.12 -0.38 -5.43 16 27 C 0.06 0.58 10.68 59.85 0.64 1.22 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.96 6.01 -51.93 -0.31 0.64 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.66 6.36 -51.93 -0.33 0.33 16 32 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.25 6.36 8.31 -40.82 -0.34 6.02 16 34 H 0.03 0.53 6.49 -51.93 -0.34 0.20 16 35 H 0.08 1.85 7.13 -51.93 -0.37 1.48 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 1.00 6.76 -51.93 -0.35 0.65 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.41 7.00 6.96 -40.82 -0.28 6.71 16 40 H 0.16 1.86 6.91 -52.49 -0.36 1.50 16 41 H 0.40 3.61 7.81 -40.82 -0.32 3.30 16 42 H 0.40 3.51 8.93 -40.82 -0.36 3.15 16 43 H 0.18 1.75 8.06 -52.48 -0.42 1.32 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.11 1.36 5.96 -51.93 -0.31 1.05 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -29.29 374.38 -7.04 -36.32 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -6.58 Total: 14.19 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -1.06 Total: 9.75 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.19 Total: -60.40 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.17 Total: -19.77 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.29 -7.04 -36.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154186396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.418 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds