Wall clock time and date at job start Sat Apr 11 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47120 * 2 1 4 4 C 1.36937 * 120.00164 * 84.46546 * 3 2 1 5 5 H 1.07999 * 119.99837 * 32.76897 * 4 3 2 6 6 C 1.38809 * 120.00235 * 213.04625 * 4 3 2 7 7 N 1.31627 * 119.99907 * 10.99747 * 6 4 3 8 8 Si 1.86794 * 120.00010 * 191.00725 * 6 4 3 9 9 H 1.48500 * 109.47517 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47340 * 119.99954 * 8 6 4 11 11 H 1.48506 * 109.46902 * 239.99691 * 8 6 4 12 12 C 1.46507 * 120.00034 * 264.46700 * 3 2 1 13 13 H 1.08999 * 109.47189 * 183.43134 * 12 3 2 14 14 C 1.52997 * 109.47032 * 63.42560 * 12 3 2 15 15 C 1.53004 * 109.47008 * 303.42601 * 12 3 2 16 16 N 1.46499 * 109.46980 * 305.00301 * 15 12 3 17 17 C 1.34780 * 119.99869 * 180.02562 * 16 15 12 18 18 O 1.21671 * 120.00108 * 5.03639 * 17 16 15 19 19 C 1.46812 * 119.99779 * 185.04713 * 17 16 15 20 20 C 1.36353 * 125.85110 * 4.96404 * 19 17 16 21 21 C 1.41309 * 107.00873 * 179.85637 * 20 19 17 22 22 C 1.47388 * 126.46469 * 180.19541 * 21 20 19 23 23 N 1.34781 * 119.99535 * 0.25428 * 22 21 20 24 24 O 1.21603 * 120.00217 * 180.25910 * 22 21 20 25 25 C 1.38212 * 107.07233 * 0.41005 * 21 20 19 26 26 N 1.34258 * 108.39770 * 359.74905 * 25 21 20 27 27 C 1.46507 * 125.38790 * 179.97438 * 26 25 21 28 28 H 1.09003 * 109.46536 * 299.99934 * 1 2 3 29 29 H 1.08995 * 109.47057 * 59.99596 * 1 2 3 30 30 H 1.09001 * 109.46846 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46536 * 240.00066 * 2 1 3 32 32 H 1.09001 * 109.47461 * 120.00496 * 2 1 3 33 33 H 0.96991 * 119.99889 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47122 * 300.00101 * 14 12 3 35 35 H 1.09000 * 109.47114 * 60.00380 * 14 12 3 36 36 H 1.09002 * 109.46975 * 180.02562 * 14 12 3 37 37 H 1.08998 * 109.47397 * 64.99850 * 15 12 3 38 38 H 1.08996 * 109.46918 * 185.00088 * 15 12 3 39 39 H 0.97000 * 120.00640 * 359.97438 * 16 15 12 40 40 H 1.07995 * 126.49780 * 359.96519 * 20 19 17 41 41 H 0.97000 * 120.00284 * 359.97438 * 23 22 21 42 42 H 0.97000 * 119.99775 * 180.02562 * 23 22 21 43 43 H 1.08004 * 125.79725 * 179.72561 * 25 21 20 44 44 H 1.08994 * 109.47242 * 273.43501 * 27 26 25 45 45 H 1.09001 * 109.47259 * 33.44491 * 27 26 25 46 46 H 1.09007 * 109.46570 * 153.43704 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1388 2.0649 1.1804 5 1 2.3985 1.5370 2.0860 6 6 1.9213 3.4354 1.2139 7 7 1.3927 4.0436 0.1731 8 14 2.3791 4.4167 2.7360 9 1 2.9512 3.5051 3.7592 10 1 3.3834 5.4495 2.3756 11 1 1.1661 5.0756 3.2835 12 6 2.3779 2.0310 -1.2629 13 1 2.7743 3.0259 -1.0596 14 6 1.1354 2.1480 -2.1480 15 6 3.4395 1.1962 -1.9819 16 7 4.5810 0.9836 -1.0885 17 6 5.6438 0.2706 -1.5112 18 8 5.6964 -0.1184 -2.6629 19 6 6.7380 -0.0368 -0.5819 20 6 6.7602 0.2545 0.7500 21 6 7.9921 -0.2179 1.2560 22 6 8.4581 -0.1283 2.6514 23 7 7.6763 0.4457 3.5873 24 8 9.5479 -0.5721 2.9582 25 6 8.6797 -0.7754 0.1946 26 7 7.9210 -0.6636 -0.9074 27 6 8.2925 -1.1333 -2.2445 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.2412 5.0013 0.1965 34 1 0.7391 1.1532 -2.3512 35 1 0.3791 2.7428 -1.6358 36 1 1.4030 2.6311 -3.0878 37 1 3.0147 0.2329 -2.2640 38 1 3.7714 1.7230 -2.8765 39 1 4.5723 1.3565 -0.1931 40 1 5.9828 0.7505 1.3121 41 1 6.8072 0.8002 3.3425 42 1 7.9831 0.5050 4.5056 43 1 9.6608 -1.2243 0.2434 44 1 8.8651 -0.3594 -2.7554 45 1 8.8979 -2.0356 -2.1575 46 1 7.3906 -1.3546 -2.8154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154186396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:01 Heat of formation + Delta-G solvation = -31.595584 kcal Electronic energy + Delta-G solvation = -28229.660797 eV Core-core repulsion = 24347.781778 eV Total energy + Delta-G solvation = -3881.879019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.65548 -40.37996 -39.71661 -38.47080 -35.49988 -34.72307 -33.74533 -33.53363 -32.48773 -30.57484 -30.03714 -27.82992 -26.96655 -25.74273 -24.16333 -23.29383 -23.02868 -21.07535 -20.91672 -20.28925 -19.29996 -18.59842 -17.64010 -17.40477 -16.86188 -16.85596 -16.50822 -16.26555 -16.21445 -15.55200 -15.34639 -15.24422 -14.98735 -14.60389 -14.53552 -14.26820 -13.97442 -13.61912 -13.41662 -13.28376 -13.19960 -13.13221 -13.01762 -12.91332 -12.73675 -12.59905 -12.13283 -11.98353 -11.70677 -11.25568 -11.21857 -11.21580 -10.91777 -10.60226 -10.40901 -10.01589 -9.89302 -9.33450 -8.47052 -7.74007 -5.24948 0.45357 0.77490 1.53957 1.57556 1.60130 1.65844 2.24698 2.42486 2.59345 2.60659 2.88354 3.43345 3.67677 3.77053 3.90668 3.95139 4.17688 4.30141 4.35087 4.39685 4.51379 4.58065 4.69683 4.76703 4.79575 4.88288 4.92362 4.94435 4.96864 5.08744 5.15648 5.22266 5.39047 5.44709 5.56611 5.66309 5.71416 5.81234 5.83750 5.99406 6.00496 6.07831 6.54115 6.57359 6.67655 7.22902 7.32528 7.42772 7.99389 8.50865 9.30335 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.004582 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.274870 B = 6109.349102 C = 7782.765950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 N -0.590 5.590 4 C -0.251 4.251 5 H 0.069 0.931 6 C -0.034 4.034 7 N -0.919 5.919 8 Si 0.950 3.050 9 H -0.260 1.260 10 H -0.297 1.297 11 H -0.308 1.308 12 C 0.184 3.816 13 H 0.076 0.924 14 C -0.132 4.132 15 C 0.116 3.884 16 N -0.688 5.688 17 C 0.580 3.420 18 O -0.588 6.588 19 C -0.071 4.071 20 C -0.092 4.092 21 C -0.259 4.259 22 C 0.597 3.403 23 N -0.836 5.836 24 O -0.599 6.599 25 C 0.104 3.896 26 N -0.400 5.400 27 C 0.055 3.945 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.245 0.755 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.413 0.587 40 H 0.164 0.836 41 H 0.413 0.587 42 H 0.411 0.589 43 H 0.207 0.793 44 H 0.089 0.911 45 H 0.118 0.882 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.188 -8.212 -0.993 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.382 4.382 5 H 0.087 0.913 6 C -0.231 4.231 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.184 1.184 10 H -0.224 1.224 11 H -0.236 1.236 12 C 0.077 3.923 13 H 0.094 0.906 14 C -0.192 4.192 15 C -0.009 4.009 16 N -0.337 5.337 17 C 0.368 3.632 18 O -0.472 6.472 19 C -0.182 4.182 20 C -0.117 4.117 21 C -0.269 4.269 22 C 0.385 3.615 23 N -0.398 5.398 24 O -0.482 6.482 25 C -0.040 4.040 26 N -0.070 5.070 27 C -0.085 4.085 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.250 0.750 40 H 0.182 0.818 41 H 0.244 0.756 42 H 0.242 0.758 43 H 0.224 0.776 44 H 0.107 0.893 45 H 0.136 0.864 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.864 -8.751 -2.164 14.117 hybrid contribution -0.698 1.386 1.321 2.038 sum 10.166 -7.365 -0.843 12.582 Atomic orbital electron populations 1.22276 0.99333 0.99672 1.00449 1.20871 0.92189 0.86506 0.98801 1.44065 1.74218 1.10360 1.02532 1.19387 1.39866 0.90275 0.88661 0.91311 1.25720 0.99270 0.99231 0.98875 1.70093 1.46710 1.08707 1.30855 0.85466 0.76514 0.78957 0.80987 1.18405 1.22428 1.23573 1.20352 0.91365 0.95569 0.84997 0.90614 1.21967 0.99542 0.99567 0.98079 1.21915 0.86452 1.00067 0.92479 1.45568 1.16636 1.52425 1.19062 1.17233 0.81704 0.78195 0.86022 1.90693 1.80652 1.56042 1.19775 1.19676 0.91265 1.12321 0.94968 1.21457 0.97600 1.00335 0.92357 1.19493 0.98333 1.15169 0.93871 1.17455 0.83173 0.75980 0.84885 1.43545 1.22333 1.61839 1.12082 1.90761 1.23253 1.51268 1.82876 1.22702 0.97771 0.99744 0.83752 1.43823 1.12240 1.41079 1.09894 1.22617 1.04072 1.02177 0.79598 0.95152 0.94098 0.92567 0.93485 0.94016 0.94546 0.94138 0.93155 0.93941 0.92692 0.92509 0.74997 0.81838 0.75624 0.75753 0.77600 0.89255 0.86411 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.61 10.02 71.98 0.72 -4.89 16 2 C 0.14 5.16 5.73 86.38 0.50 5.66 16 3 N -0.59 -24.24 1.83 -678.02 -1.24 -25.48 16 4 C -0.25 -11.43 9.50 84.03 0.80 -10.63 16 5 H 0.07 3.06 7.85 -2.91 -0.02 3.03 16 6 C -0.03 -1.64 5.01 84.86 0.42 -1.22 16 7 N -0.92 -47.16 9.95 21.65 0.22 -46.94 16 8 Si 0.95 39.67 29.57 68.60 2.03 41.69 16 9 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 10 H -0.30 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.31 -13.62 7.11 99.48 0.71 -12.92 16 12 C 0.18 7.40 1.91 44.99 0.09 7.49 16 13 H 0.08 3.56 5.98 -2.39 -0.01 3.54 16 14 C -0.13 -5.19 8.22 71.98 0.59 -4.60 16 15 C 0.12 4.11 4.86 86.38 0.42 4.53 16 16 N -0.69 -22.81 5.36 -466.96 -2.50 -25.31 16 17 C 0.58 18.95 7.77 86.49 0.67 19.63 16 18 O -0.59 -21.49 14.50 -4.26 -0.06 -21.55 16 19 C -0.07 -1.99 6.82 40.01 0.27 -1.72 16 20 C -0.09 -2.31 9.74 22.59 0.22 -2.09 16 21 C -0.26 -6.37 6.13 -20.12 -0.12 -6.50 16 22 C 0.60 15.29 8.09 86.65 0.70 15.99 16 23 N -0.84 -15.67 8.87 -175.91 -1.56 -17.23 16 24 O -0.60 -19.16 17.74 -4.04 -0.07 -19.24 16 25 C 0.10 2.25 11.18 84.32 0.94 3.19 16 26 N -0.40 -9.25 3.12 -533.95 -1.67 -10.92 16 27 C 0.06 0.97 10.68 127.77 1.36 2.34 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.51 6.01 -2.39 -0.01 1.50 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.62 6.36 -2.39 -0.02 1.60 16 32 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.25 12.61 8.31 -92.71 -0.77 11.84 16 34 H 0.04 1.46 6.49 -2.39 -0.02 1.44 16 35 H 0.05 2.30 7.13 -2.39 -0.02 2.28 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.94 6.76 -2.39 -0.02 1.93 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.41 13.69 6.96 -92.71 -0.65 13.04 16 40 H 0.16 3.66 6.91 -2.91 -0.02 3.64 16 41 H 0.41 6.49 7.81 -92.71 -0.72 5.76 16 42 H 0.41 6.40 8.93 -92.71 -0.83 5.57 16 43 H 0.21 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.09 2.10 5.96 -2.38 -0.01 2.09 16 Total: -1.00 -62.64 374.38 1.57 -61.07 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -1.16 Total: 36.72 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: 7.59 Total: 27.18 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -6.76 Total: -125.89 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.13 Total: -40.78 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Total: -62.64 1.57 -61.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154186396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.473 kcal (2) G-P(sol) polarization free energy of solvation -62.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds