Wall clock time and date at job start Sat Apr 11 2020 00:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 119.99836 * 2 1 4 4 H 1.08003 * 119.99772 * 142.91301 * 3 2 1 5 5 C 1.38809 * 120.00099 * 322.91179 * 3 2 1 6 6 N 1.31624 * 119.99793 * 161.10030 * 5 3 2 7 7 Si 1.86793 * 120.00323 * 341.09840 * 5 3 2 8 8 H 1.48503 * 109.47084 * 91.54758 * 7 5 3 9 9 H 1.48496 * 109.47558 * 211.55361 * 7 5 3 10 10 H 1.48505 * 109.47155 * 331.55162 * 7 5 3 11 11 C 1.46500 * 119.99886 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47298 * 266.85696 * 11 2 1 13 13 H 1.08998 * 109.70112 * 298.27121 * 12 11 2 14 14 C 1.53624 * 109.66312 * 58.86016 * 12 11 2 15 15 C 1.53041 * 109.24198 * 174.54707 * 14 12 11 16 16 C 1.53036 * 109.53718 * 298.51628 * 15 14 12 17 17 C 1.53188 * 109.31532 * 61.36344 * 16 15 14 18 18 N 1.46925 * 108.77712 * 305.36128 * 17 16 15 19 19 C 1.34772 * 120.63346 * 233.58733 * 18 17 16 20 20 O 1.21632 * 119.99789 * 185.74261 * 19 18 17 21 21 C 1.47251 * 119.99955 * 5.47374 * 19 18 17 22 22 C 1.36248 * 126.16289 * 174.32681 * 21 19 18 23 23 N 1.36346 * 106.88638 * 179.97438 * 22 21 19 24 24 C 1.46504 * 126.20062 * 179.97438 * 23 22 21 25 25 C 1.36173 * 107.60086 * 359.97438 * 23 22 21 26 26 O 1.35449 * 125.54987 * 179.97438 * 25 23 22 27 27 N 1.30704 * 108.89424 * 359.77001 * 25 23 22 28 28 H 1.08999 * 109.47106 * 269.55105 * 1 2 3 29 29 H 1.08998 * 109.46802 * 29.54391 * 1 2 3 30 30 H 1.09002 * 109.47080 * 149.54775 * 1 2 3 31 31 H 0.96998 * 119.99766 * 180.02562 * 6 5 3 32 32 H 1.09005 * 109.47021 * 146.85434 * 11 2 1 33 33 H 1.09005 * 109.47151 * 26.86009 * 11 2 1 34 34 H 1.09004 * 109.63147 * 54.55840 * 14 12 11 35 35 H 1.09000 * 109.45904 * 294.43251 * 14 12 11 36 36 H 1.08999 * 109.46071 * 178.48778 * 15 14 12 37 37 H 1.09004 * 109.44516 * 58.52418 * 15 14 12 38 38 H 1.09001 * 109.49713 * 301.40429 * 16 15 14 39 39 H 1.09009 * 109.52372 * 181.33279 * 16 15 14 40 40 H 1.09000 * 109.58555 * 185.57700 * 17 16 15 41 41 H 1.08994 * 109.70547 * 65.22364 * 17 16 15 42 42 H 1.07999 * 126.55907 * 359.92813 * 22 21 19 43 43 H 1.09000 * 109.46956 * 89.99654 * 24 23 22 44 44 H 1.08991 * 109.47037 * 209.99897 * 24 23 22 45 45 H 1.08998 * 109.46435 * 330.00181 * 24 23 22 46 46 H 0.96707 * 113.99938 * 90.00755 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0658 1.2805 0.5640 5 6 1.6662 2.2664 -0.7249 6 7 2.0837 3.4838 -0.4489 7 14 0.4233 1.9929 -2.0922 8 1 -0.9512 2.1073 -1.5418 9 1 0.6191 3.0154 -3.1512 10 1 0.6137 0.6385 -2.6707 11 6 2.1975 -1.2687 0.0006 12 6 2.5210 -1.6703 1.4410 13 1 3.1588 -0.9142 1.8988 14 6 1.2188 -1.8063 2.2446 15 6 1.5420 -2.3388 3.6425 16 6 2.1833 -3.7235 3.5271 17 6 3.4915 -3.6118 2.7378 18 7 3.2118 -2.9670 1.4476 19 6 3.5866 -3.5512 0.2923 20 8 3.4440 -2.9612 -0.7617 21 6 4.1744 -4.9012 0.3068 22 6 4.4954 -5.6501 -0.7852 23 7 5.0096 -6.8250 -0.3225 24 6 5.4912 -7.9407 -1.1408 25 6 4.9944 -6.7736 1.0382 26 8 5.4251 -7.7536 1.8682 27 7 4.5006 -5.6229 1.4128 28 1 -0.3633 -0.0081 1.0276 29 1 -0.3633 0.8940 -0.5067 30 1 -0.3633 -0.8859 -0.5209 31 1 1.7456 4.2389 -0.9552 32 1 3.1244 -1.1534 -0.5614 33 1 1.5852 -2.0420 -0.4634 34 1 0.5464 -2.4987 1.7380 35 1 0.7404 -0.8305 2.3287 36 1 0.6235 -2.4113 4.2249 37 1 2.2340 -1.6584 4.1390 38 1 1.5019 -4.3979 3.0085 39 1 2.3918 -4.1127 4.5237 40 1 3.9015 -4.6073 2.5674 41 1 4.2087 -3.0122 3.2981 42 1 4.3665 -5.3675 -1.8195 43 1 6.5528 -7.8070 -1.3488 44 1 5.3414 -8.8768 -0.6031 45 1 4.9377 -7.9681 -2.0794 46 1 6.3602 -7.6857 2.1050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158437813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:20 Heat of formation + Delta-G solvation = 55.430713 kcal Electronic energy + Delta-G solvation = -28630.158567 eV Core-core repulsion = 24752.053291 eV Total energy + Delta-G solvation = -3878.105275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48703 -39.87142 -37.71917 -36.92414 -35.59657 -34.55947 -32.38780 -31.87293 -30.45645 -29.37896 -27.70949 -26.85643 -25.59812 -24.44174 -23.20833 -22.22914 -21.70898 -20.53952 -20.21743 -19.15633 -18.45906 -17.19250 -16.76780 -16.29402 -15.89414 -15.52299 -15.16171 -15.03692 -14.72596 -14.58703 -14.10381 -13.84863 -13.60615 -13.34285 -13.21710 -13.04504 -12.91319 -12.76641 -12.49698 -12.31063 -12.23339 -12.12218 -11.67823 -11.27497 -11.01204 -10.64673 -10.50640 -10.40677 -10.28973 -10.14402 -9.99047 -9.75190 -9.55969 -9.35159 -8.79623 -8.73295 -8.34328 -8.01848 -6.60472 -5.82176 -3.23898 1.35257 1.87510 2.10106 3.17628 3.42780 3.53687 3.58901 3.68109 3.69585 4.24662 4.35894 4.60018 4.68200 4.85728 4.89668 5.13872 5.22580 5.23191 5.36267 5.38968 5.54118 5.57420 5.59015 5.73495 5.77894 6.00158 6.06785 6.15396 6.19561 6.24984 6.34587 6.40871 6.46016 6.55157 6.59044 6.66617 6.71992 6.85256 7.02899 7.03920 7.24272 7.41047 7.49269 7.89976 8.23237 8.49794 8.64593 9.19081 9.89485 10.31279 11.34018 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.003637 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.307259 B = 7696.788024 C = 8708.112006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.613 5.613 3 C -0.259 4.259 4 H 0.078 0.922 5 C 0.029 3.971 6 N -0.910 5.910 7 Si 0.892 3.108 8 H -0.288 1.288 9 H -0.306 1.306 10 H -0.271 1.271 11 C 0.160 3.840 12 C 0.124 3.876 13 H 0.073 0.927 14 C -0.121 4.121 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.062 3.938 18 N -0.586 5.586 19 C 0.593 3.407 20 O -0.527 6.527 21 C -0.033 4.033 22 C 0.041 3.959 23 N -0.464 5.464 24 C 0.068 3.932 25 C 0.375 3.625 26 O -0.441 6.441 27 N -0.451 5.451 28 H 0.014 0.986 29 H 0.042 0.958 30 H 0.027 0.973 31 H 0.261 0.739 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.153 0.847 41 H 0.055 0.945 42 H 0.197 0.803 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.260 -26.585 3.835 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.338 5.338 3 C -0.388 4.388 4 H 0.096 0.904 5 C -0.171 4.171 6 N -0.553 5.553 7 Si 0.724 3.276 8 H -0.217 1.217 9 H -0.235 1.235 10 H -0.196 1.196 11 C 0.034 3.966 12 C 0.020 3.980 13 H 0.091 0.909 14 C -0.160 4.160 15 C -0.160 4.160 16 C -0.165 4.165 17 C -0.061 4.061 18 N -0.318 5.318 19 C 0.380 3.620 20 O -0.404 6.404 21 C -0.161 4.161 22 C -0.096 4.096 23 N -0.159 5.159 24 C -0.074 4.074 25 C 0.075 3.925 26 O -0.242 6.242 27 N -0.182 5.182 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.168 0.832 41 H 0.073 0.927 42 H 0.214 0.786 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.590 -26.232 4.000 27.341 hybrid contribution -0.117 -0.290 -1.168 1.210 sum 6.473 -26.522 2.832 27.447 Atomic orbital electron populations 1.21463 0.85594 0.98718 0.98031 1.44328 1.00299 1.02707 1.86468 1.18799 1.08526 0.87072 1.24372 0.90403 1.25444 0.98438 0.95377 0.97798 1.69845 1.46384 0.97915 1.41138 0.86774 0.80417 0.77415 0.83020 1.21693 1.23503 1.19563 1.21513 0.97858 0.86552 0.90703 1.22393 0.92256 0.81977 1.01416 0.90909 1.22016 0.97491 1.02003 0.94450 1.21581 1.00201 0.96487 0.97711 1.21835 0.97552 0.97417 0.99722 1.22942 0.96625 1.03088 0.83423 1.48075 1.56646 1.21418 1.05667 1.16954 0.78092 0.82806 0.84192 1.90905 1.55949 1.62214 1.31299 1.20743 1.09580 0.97263 0.88542 1.22681 1.01463 0.84568 1.00864 1.45813 1.47794 1.15144 1.07151 1.22144 1.00996 0.88092 0.96189 1.20615 1.03665 0.89599 0.78624 1.84887 1.32506 1.44609 1.62186 1.70384 1.18294 1.01647 1.27874 0.96754 0.93990 0.95426 0.92951 0.89711 0.93883 0.92690 0.89683 0.92553 0.92099 0.92263 0.91676 0.83153 0.92685 0.78622 0.90073 0.88981 0.88943 0.74103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.51 8.66 59.85 0.52 3.03 16 2 N -0.61 -15.74 2.17 -181.11 -0.39 -16.13 16 3 C -0.26 -7.65 9.96 -15.06 -0.15 -7.80 16 4 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 5 C 0.03 0.87 5.36 -17.43 -0.09 0.77 16 6 N -0.91 -28.98 13.97 55.49 0.78 -28.21 16 7 Si 0.89 23.92 24.93 -169.99 -4.24 19.68 16 8 H -0.29 -7.44 6.55 56.52 0.37 -7.07 16 9 H -0.31 -8.27 7.11 56.52 0.40 -7.87 16 10 H -0.27 -7.27 7.11 56.52 0.40 -6.87 16 11 C 0.16 3.67 3.66 -4.04 -0.01 3.65 16 12 C 0.12 2.44 3.22 -67.38 -0.22 2.22 16 13 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 14 C -0.12 -2.14 4.59 -26.39 -0.12 -2.26 16 15 C -0.12 -1.77 5.88 -26.69 -0.16 -1.93 16 16 C -0.13 -1.68 6.08 -26.62 -0.16 -1.84 16 17 C 0.06 0.90 6.33 -3.71 -0.02 0.87 16 18 N -0.59 -10.12 2.97 -166.29 -0.49 -10.61 16 19 C 0.59 10.38 7.52 -12.60 -0.09 10.29 16 20 O -0.53 -10.71 12.43 5.25 0.07 -10.64 16 21 C -0.03 -0.46 6.74 -83.06 -0.56 -1.02 16 22 C 0.04 0.44 11.30 -16.26 -0.18 0.25 16 23 N -0.46 -3.81 3.16 -125.77 -0.40 -4.21 16 24 C 0.07 0.24 11.11 59.85 0.66 0.90 16 25 C 0.37 3.67 9.03 -89.16 -0.81 2.86 16 26 O -0.44 -3.04 13.55 -18.04 -0.24 -3.28 16 27 N -0.45 -5.72 7.63 -11.22 -0.09 -5.80 16 28 H 0.01 0.32 6.54 -51.93 -0.34 -0.02 16 29 H 0.04 1.06 2.84 -51.93 -0.15 0.91 16 30 H 0.03 0.59 7.88 -51.93 -0.41 0.18 16 31 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 32 H 0.08 2.15 6.18 -51.93 -0.32 1.83 16 33 H 0.04 0.99 6.94 -51.93 -0.36 0.63 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.65 6.03 -51.93 -0.31 1.34 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.15 2.10 3.58 -82.40 -0.30 1.81 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.09 0.24 8.13 -51.93 -0.42 -0.18 16 45 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.40 0.72 9.06 45.56 0.41 1.13 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -37.01 355.88 -7.06 -44.07 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.01 Total: -0.23 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -1.40 Total: 10.00 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.59 Total: -64.96 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.18 Total: -13.92 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -4.24 Total: 19.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.01 -7.06 -44.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158437813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.502 kcal (2) G-P(sol) polarization free energy of solvation -37.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds