Wall clock time and date at job start Sat Apr 11 2020 00:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.36006 * 116.99894 * 179.97438 * 10 9 7 12 12 C 1.38692 * 119.98141 * 359.72103 * 11 10 9 13 13 C 1.38117 * 120.01830 * 179.76216 * 12 11 10 14 14 C 1.38857 * 119.97607 * 0.53659 * 13 12 11 15 15 N 1.39944 * 120.01609 * 179.69690 * 14 13 12 16 16 C 1.46498 * 119.99875 * 0.02562 * 15 14 13 17 17 C 1.53006 * 109.46953 * 179.97438 * 16 15 14 18 18 F 1.39899 * 108.81998 * 60.00338 * 17 16 15 19 19 C 1.45883 * 108.84424 * 178.48649 * 17 16 15 20 20 C 1.54519 * 111.67814 * 182.31277 * 19 17 16 21 21 C 1.50529 * 108.85359 * 282.73713 * 20 19 17 22 22 C 1.53918 * 112.93144 * 91.76360 * 21 20 19 23 23 N 1.47945 * 113.33083 * 317.75571 * 22 21 20 24 24 C 1.44396 * 113.55993 * 318.13078 * 23 22 21 25 25 C 1.38860 * 119.96532 * 359.71654 * 14 13 12 26 26 C 1.38108 * 119.97988 * 0.02562 * 25 14 13 27 27 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 29 29 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 30 30 H 1.07997 * 119.99159 * 0.02562 * 12 11 10 31 31 H 1.07994 * 120.00927 * 180.25338 * 13 12 11 32 32 H 0.97002 * 119.99893 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.47384 * 299.99979 * 16 15 14 34 34 H 1.09001 * 109.47431 * 59.99929 * 16 15 14 35 35 H 1.09000 * 109.03560 * 302.88154 * 19 17 16 36 36 H 1.08996 * 109.03693 * 61.81788 * 19 17 16 37 37 H 1.08999 * 109.57225 * 42.55440 * 20 19 17 38 38 H 1.09005 * 109.57087 * 162.79797 * 20 19 17 39 39 H 1.09003 * 108.79317 * 212.64981 * 21 20 19 40 40 H 1.09000 * 108.79305 * 330.87291 * 21 20 19 41 41 H 1.09007 * 108.70986 * 78.75201 * 22 21 20 42 42 H 1.09003 * 108.70981 * 196.75604 * 22 21 20 43 43 H 1.00907 * 110.99385 * 192.17758 * 23 22 21 44 44 H 1.09001 * 109.79173 * 335.77666 * 24 23 22 45 45 H 1.08996 * 109.63569 * 215.16096 * 24 23 22 46 46 H 1.07999 * 120.00945 * 180.02562 * 25 14 13 47 47 H 1.07997 * 119.98974 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 8 2.1798 -3.5852 0.0179 11 6 1.6600 -4.8419 0.0249 12 6 0.2850 -5.0232 0.0322 13 6 -0.2437 -6.2992 0.0343 14 6 0.6019 -7.4006 0.0405 15 7 0.0670 -8.6937 0.0490 16 6 -1.3853 -8.8857 0.0510 17 6 -1.7018 -10.3826 0.0602 18 9 -1.1468 -10.9543 1.2101 19 6 -3.1496 -10.5579 0.0985 20 6 -3.5422 -12.0508 0.1676 21 6 -3.3920 -12.6572 -1.2019 22 6 -2.0023 -13.2767 -1.4344 23 7 -0.8953 -12.4442 -0.9145 24 6 -1.0601 -11.0343 -1.1787 25 6 1.9784 -7.2181 0.0384 26 6 2.5054 -5.9415 0.0309 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6248 -2.5524 0.9029 29 1 0.6241 -2.5613 -0.8770 30 1 -0.3725 -4.1664 0.0319 31 1 -1.3144 -6.4402 0.0359 32 1 0.6580 -9.4630 0.0537 33 1 -1.8124 -8.4182 0.9382 34 1 -1.8133 -8.4297 -0.8417 35 1 -3.5467 -10.0448 0.9744 36 1 -3.5848 -10.1180 -0.7987 37 1 -2.8885 -12.5681 0.8698 38 1 -4.5771 -12.1413 0.4977 39 1 -4.1476 -13.4328 -1.3273 40 1 -3.5604 -11.8820 -1.9495 41 1 -1.9673 -14.2503 -0.9454 42 1 -1.8585 -13.4209 -2.5052 43 1 -0.0043 -12.7749 -1.2536 44 1 -1.7076 -10.8942 -2.0443 45 1 -0.0874 -10.5812 -1.3697 46 1 2.6368 -8.0742 0.0428 47 1 3.5760 -5.7995 0.0289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162587453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:45 Heat of formation + Delta-G solvation = -63.211341 kcal Electronic energy + Delta-G solvation = -26856.393788 eV Core-core repulsion = 22953.223846 eV Total energy + Delta-G solvation = -3903.169943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.81753 -39.54368 -38.84186 -37.36847 -35.17941 -33.95179 -33.15092 -32.24181 -30.63861 -28.74205 -27.16706 -26.32498 -25.93111 -24.06412 -23.34112 -21.68825 -20.99420 -20.57185 -20.15025 -17.92699 -17.34452 -17.09589 -16.61901 -16.30630 -16.08963 -15.55624 -15.21065 -14.81498 -14.62217 -14.37037 -14.12064 -13.95440 -13.84598 -13.77410 -13.55536 -13.15139 -13.02281 -12.66585 -12.46704 -12.34961 -12.23926 -12.10807 -11.72618 -11.69593 -11.34744 -11.17114 -11.06570 -10.95253 -10.86165 -10.69732 -10.45499 -10.16697 -10.13794 -9.11347 -8.80272 -8.75170 -8.62979 -8.44485 -6.72184 -6.56316 -4.26489 1.72825 2.09627 3.38690 3.39462 3.43293 3.56301 3.59905 4.02263 4.19694 4.24966 4.28903 4.29546 4.37532 4.56461 4.59196 4.64052 4.77998 4.95626 5.04597 5.09466 5.15244 5.21466 5.22302 5.28740 5.31123 5.38521 5.42807 5.56062 5.62954 5.68472 5.74098 5.82853 5.85270 5.92198 5.98933 6.32450 6.48980 6.58009 6.60774 6.64094 6.88722 6.93531 6.93722 7.07346 7.48898 7.79599 7.82453 8.16498 8.58818 8.74412 9.43599 10.84005 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031959 B = 0.002035 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.917671 B =13753.494937 C =14253.186540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 1.084 2.916 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.602 4.602 8 H 0.064 0.936 9 C 0.186 3.814 10 O -0.315 6.315 11 C 0.099 3.901 12 C -0.167 4.167 13 C -0.153 4.153 14 C 0.159 3.841 15 N -0.752 5.752 16 C 0.106 3.894 17 C 0.130 3.870 18 F -0.193 7.193 19 C -0.147 4.147 20 C -0.110 4.110 21 C -0.124 4.124 22 C 0.064 3.936 23 N -0.693 5.693 24 C 0.046 3.954 25 C -0.152 4.152 26 C -0.121 4.121 27 H 0.268 0.732 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.397 0.603 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.351 0.649 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 -28.043 -3.115 29.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.184 4.184 3 Si 0.911 3.089 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.640 4.640 8 H 0.083 0.917 9 C 0.113 3.887 10 O -0.228 6.228 11 C 0.051 3.949 12 C -0.187 4.187 13 C -0.175 4.175 14 C 0.059 3.941 15 N -0.387 5.387 16 C -0.020 4.020 17 C 0.110 3.890 18 F -0.174 7.174 19 C -0.185 4.185 20 C -0.148 4.148 21 C -0.162 4.162 22 C -0.065 4.065 23 N -0.324 5.324 24 C -0.085 4.085 25 C -0.174 4.174 26 C -0.140 4.140 27 H 0.078 0.922 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.170 0.830 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.137 0.863 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.315 -26.246 -2.506 27.361 hybrid contribution 0.216 -1.937 -0.854 2.128 sum -7.100 -28.183 -3.361 29.257 Atomic orbital electron populations 1.70784 1.06821 1.30510 1.46115 1.25984 0.96376 1.02720 0.93307 0.83332 0.74564 0.74012 0.77034 1.21101 1.21114 1.20733 1.21890 0.95687 0.89952 1.56466 0.91740 1.20615 0.89373 0.83426 0.95297 1.86134 1.37893 1.11468 1.87304 1.19102 0.91547 0.86507 0.97710 1.21179 0.94675 0.97586 1.05238 1.20356 0.98488 0.91070 1.07584 1.17541 0.92053 0.84584 0.99879 1.44279 1.04534 1.04508 1.85428 1.21915 0.83405 0.94358 1.02365 1.19903 0.93683 0.91366 0.84026 1.92881 1.87239 1.86270 1.50986 1.21185 0.94532 0.98714 1.04038 1.21206 1.01633 0.94314 0.97613 1.21438 0.96092 1.00686 0.97936 1.22255 0.90453 0.96730 0.97031 1.58768 1.05414 1.02048 1.66204 1.22162 1.01662 0.89163 0.95507 1.20251 0.92646 0.96500 1.08016 1.20164 0.99376 0.89894 1.04604 0.92233 0.97389 0.97398 0.85468 0.86676 0.76775 0.91476 0.91266 0.90389 0.90341 0.89980 0.91569 0.91189 0.92265 0.90863 0.95195 0.82970 0.92355 0.90034 0.86289 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.45 13.65 55.43 0.76 -26.69 16 2 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 3 Si 1.08 25.26 29.90 -169.99 -5.08 20.18 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.60 -17.84 9.43 -34.44 -0.32 -18.16 16 8 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.19 5.09 3.80 36.01 0.14 5.22 16 10 O -0.31 -7.99 10.12 -19.76 -0.20 -8.19 16 11 C 0.10 2.11 6.69 -39.24 -0.26 1.85 16 12 C -0.17 -3.26 9.03 -39.46 -0.36 -3.62 16 13 C -0.15 -2.46 9.31 -39.40 -0.37 -2.83 16 14 C 0.16 2.32 6.66 -83.69 -0.56 1.76 16 15 N -0.75 -8.53 5.10 -58.58 -0.30 -8.83 16 16 C 0.11 1.02 3.99 -4.04 -0.02 1.01 16 17 C 0.13 1.09 0.76 -93.47 -0.07 1.02 16 18 F -0.19 -2.18 15.17 2.25 0.03 -2.14 16 19 C -0.15 -1.04 4.26 -29.30 -0.12 -1.17 16 20 C -0.11 -0.73 5.60 -27.17 -0.15 -0.88 16 21 C -0.12 -0.69 5.27 -27.49 -0.14 -0.83 16 22 C 0.06 0.37 6.44 -2.77 -0.02 0.35 16 23 N -0.69 -4.72 5.67 -113.71 -0.64 -5.37 16 24 C 0.05 0.33 5.28 -4.65 -0.02 0.31 16 25 C -0.15 -2.27 9.89 -39.40 -0.39 -2.66 16 26 C -0.12 -2.16 9.98 -39.46 -0.39 -2.55 16 27 H 0.27 8.01 7.22 -40.82 -0.29 7.72 16 28 H 0.01 0.23 7.52 -51.92 -0.39 -0.16 16 29 H 0.01 0.23 7.53 -51.93 -0.39 -0.16 16 30 H 0.13 2.58 6.29 -52.49 -0.33 2.25 16 31 H 0.12 1.60 6.73 -52.49 -0.35 1.25 16 32 H 0.40 4.06 7.28 -40.82 -0.30 3.76 16 33 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 34 H 0.07 0.62 7.95 -51.93 -0.41 0.21 16 35 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 36 H 0.08 0.47 7.58 -51.93 -0.39 0.08 16 37 H 0.08 0.69 7.14 -51.93 -0.37 0.32 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.33 6.65 -51.93 -0.35 -0.02 16 41 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 42 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.35 1.95 8.89 -39.29 -0.35 1.60 16 44 H 0.06 0.39 6.78 -51.93 -0.35 0.04 16 45 H 0.08 0.60 6.41 -51.93 -0.33 0.27 16 46 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 47 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -32.59 369.32 -10.22 -42.82 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.19 Total: 3.38 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -3.16 Total: -20.72 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.19 Total: -40.89 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.20 Total: -8.19 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.03 Total: -2.14 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.59 -10.22 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162587453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.394 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds