Wall clock time and date at job start Sat Apr 11 2020 00:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.36006 * 116.99894 * 179.97438 * 10 9 7 12 12 C 1.38692 * 119.98141 * 359.72103 * 11 10 9 13 13 C 1.38117 * 120.01830 * 179.76216 * 12 11 10 14 14 C 1.38857 * 119.97607 * 0.53659 * 13 12 11 15 15 N 1.39944 * 120.01609 * 179.69690 * 14 13 12 16 16 C 1.46498 * 119.99875 * 0.02562 * 15 14 13 17 17 C 1.53006 * 109.46953 * 179.97438 * 16 15 14 18 18 F 1.39899 * 108.81998 * 60.00338 * 17 16 15 19 19 C 1.45883 * 108.84424 * 178.48649 * 17 16 15 20 20 C 1.54519 * 111.67814 * 182.31277 * 19 17 16 21 21 C 1.50529 * 108.85359 * 282.73713 * 20 19 17 22 22 C 1.53918 * 112.93144 * 91.76360 * 21 20 19 23 23 N 1.47945 * 113.33083 * 317.75571 * 22 21 20 24 24 C 1.44396 * 113.55993 * 318.13078 * 23 22 21 25 25 C 1.38860 * 119.96532 * 359.71654 * 14 13 12 26 26 C 1.38108 * 119.97988 * 0.02562 * 25 14 13 27 27 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 29 29 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 30 30 H 1.07997 * 119.99159 * 0.02562 * 12 11 10 31 31 H 1.07994 * 120.00927 * 180.25338 * 13 12 11 32 32 H 0.97002 * 119.99893 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.47384 * 299.99979 * 16 15 14 34 34 H 1.09001 * 109.47431 * 59.99929 * 16 15 14 35 35 H 1.09000 * 109.03560 * 302.88154 * 19 17 16 36 36 H 1.08996 * 109.03693 * 61.81788 * 19 17 16 37 37 H 1.08999 * 109.57225 * 42.55440 * 20 19 17 38 38 H 1.09005 * 109.57087 * 162.79797 * 20 19 17 39 39 H 1.09003 * 108.79317 * 212.64981 * 21 20 19 40 40 H 1.09000 * 108.79305 * 330.87291 * 21 20 19 41 41 H 1.09007 * 108.70986 * 78.75201 * 22 21 20 42 42 H 1.09003 * 108.70981 * 196.75604 * 22 21 20 43 43 H 1.00907 * 110.99385 * 192.17758 * 23 22 21 44 44 H 1.09001 * 109.79173 * 335.77666 * 24 23 22 45 45 H 1.08996 * 109.63569 * 215.16096 * 24 23 22 46 46 H 1.07999 * 120.00945 * 180.02562 * 25 14 13 47 47 H 1.07997 * 119.98974 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 8 2.1798 -3.5852 0.0179 11 6 1.6600 -4.8419 0.0249 12 6 0.2850 -5.0232 0.0322 13 6 -0.2437 -6.2992 0.0343 14 6 0.6019 -7.4006 0.0405 15 7 0.0670 -8.6937 0.0490 16 6 -1.3853 -8.8857 0.0510 17 6 -1.7018 -10.3826 0.0602 18 9 -1.1468 -10.9543 1.2101 19 6 -3.1496 -10.5579 0.0985 20 6 -3.5422 -12.0508 0.1676 21 6 -3.3920 -12.6572 -1.2019 22 6 -2.0023 -13.2767 -1.4344 23 7 -0.8953 -12.4442 -0.9145 24 6 -1.0601 -11.0343 -1.1787 25 6 1.9784 -7.2181 0.0384 26 6 2.5054 -5.9415 0.0309 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6248 -2.5524 0.9029 29 1 0.6241 -2.5613 -0.8770 30 1 -0.3725 -4.1664 0.0319 31 1 -1.3144 -6.4402 0.0359 32 1 0.6580 -9.4630 0.0537 33 1 -1.8124 -8.4182 0.9382 34 1 -1.8133 -8.4297 -0.8417 35 1 -3.5467 -10.0448 0.9744 36 1 -3.5848 -10.1180 -0.7987 37 1 -2.8885 -12.5681 0.8698 38 1 -4.5771 -12.1413 0.4977 39 1 -4.1476 -13.4328 -1.3273 40 1 -3.5604 -11.8820 -1.9495 41 1 -1.9673 -14.2503 -0.9454 42 1 -1.8585 -13.4209 -2.5052 43 1 -0.0043 -12.7749 -1.2536 44 1 -1.7076 -10.8942 -2.0443 45 1 -0.0874 -10.5812 -1.3697 46 1 2.6368 -8.0742 0.0428 47 1 3.5760 -5.7995 0.0289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162587453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:44 Heat of formation + Delta-G solvation = -84.006384 kcal Electronic energy + Delta-G solvation = -26857.295529 eV Core-core repulsion = 22953.223846 eV Total energy + Delta-G solvation = -3904.071683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.59540 -40.98423 -39.55830 -38.77398 -36.31222 -35.29186 -34.50087 -33.07193 -32.02100 -30.08149 -28.81658 -27.32589 -26.58210 -25.44488 -24.80378 -23.12207 -22.29308 -21.18426 -20.75625 -19.35448 -19.09722 -18.45424 -17.45969 -17.25269 -16.95565 -16.54063 -16.24250 -16.16842 -15.80441 -15.63992 -15.59373 -15.01874 -14.84698 -14.58592 -14.54586 -14.32778 -14.22908 -14.06878 -13.73905 -13.58713 -13.32008 -13.05288 -12.95173 -12.79042 -12.71644 -12.27841 -12.14338 -11.92235 -11.88865 -11.73855 -11.62292 -11.42595 -11.33025 -10.92825 -10.75603 -10.40052 -9.96838 -9.29188 -8.91077 -8.04983 -6.63423 0.36372 0.67492 1.51596 1.61215 1.81637 2.37005 2.44075 2.75979 2.87812 2.97394 3.05538 3.34797 3.59562 3.72867 3.82553 3.88516 3.96836 4.06914 4.13027 4.24850 4.27807 4.36988 4.39370 4.45932 4.55761 4.57450 4.58432 4.64238 4.67227 4.71538 4.78670 4.90526 4.98916 5.09308 5.14693 5.16460 5.22533 5.25885 5.28716 5.43887 5.45417 5.65908 5.68666 5.90473 6.12454 6.25683 6.32476 6.45642 6.76956 6.84567 7.17549 8.50193 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031959 B = 0.002035 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.917671 B =13753.494937 C =14253.186540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.134 2.866 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.630 4.630 8 H 0.058 0.942 9 C 0.203 3.797 10 O -0.339 6.339 11 C 0.044 3.956 12 C -0.179 4.179 13 C -0.157 4.157 14 C 0.179 3.821 15 N -0.738 5.738 16 C 0.100 3.900 17 C 0.133 3.867 18 F -0.210 7.210 19 C -0.149 4.149 20 C -0.107 4.107 21 C -0.123 4.123 22 C 0.062 3.938 23 N -0.703 5.703 24 C 0.050 3.950 25 C -0.144 4.144 26 C -0.118 4.118 27 H 0.257 0.743 28 H -0.008 1.008 29 H -0.007 1.007 30 H 0.105 0.895 31 H 0.137 0.863 32 H 0.407 0.593 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.358 0.642 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.158 0.842 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 -29.961 -3.711 30.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.223 4.223 3 Si 0.952 3.048 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.667 4.667 8 H 0.076 0.924 9 C 0.129 3.871 10 O -0.253 6.253 11 C -0.002 4.002 12 C -0.198 4.198 13 C -0.180 4.180 14 C 0.077 3.923 15 N -0.372 5.372 16 C -0.025 4.025 17 C 0.113 3.887 18 F -0.191 7.191 19 C -0.187 4.187 20 C -0.144 4.144 21 C -0.161 4.161 22 C -0.066 4.066 23 N -0.336 5.336 24 C -0.081 4.081 25 C -0.167 4.167 26 C -0.137 4.137 27 H 0.066 0.934 28 H 0.010 0.990 29 H 0.011 0.989 30 H 0.123 0.877 31 H 0.155 0.845 32 H 0.244 0.756 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.178 0.822 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.175 0.825 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.277 -28.259 -3.100 29.345 hybrid contribution 0.118 -1.635 -0.652 1.764 sum -7.159 -29.894 -3.752 30.967 Atomic orbital electron populations 1.70897 1.07692 1.29928 1.47331 1.27702 0.96454 1.06554 0.91620 0.82755 0.73991 0.69766 0.78320 1.19153 1.19333 1.19801 1.22254 0.95667 0.91529 1.57292 0.92396 1.20178 0.89123 0.84093 0.93729 1.86032 1.37687 1.12770 1.88840 1.19517 0.92989 0.85561 1.02169 1.21112 0.93916 0.98499 1.06289 1.20497 0.99891 0.90097 1.07495 1.17634 0.91993 0.85490 0.97153 1.44336 1.05679 1.03422 1.83744 1.22090 0.82084 0.95612 1.02732 1.20024 0.94478 0.90284 0.83926 1.92850 1.87588 1.86501 1.52171 1.21220 0.93690 0.99218 1.04609 1.21166 1.01634 0.93743 0.97894 1.21446 0.96357 1.01127 0.97180 1.22292 0.90223 0.96539 0.97529 1.58738 1.06181 1.01983 1.66682 1.22101 1.01664 0.89399 0.94934 1.20602 0.93334 0.96374 1.06344 1.20398 0.99654 0.89932 1.03691 0.93432 0.99032 0.98899 0.87663 0.84515 0.75629 0.92061 0.89904 0.90817 0.88851 0.91956 0.90715 0.90049 0.91860 0.90875 0.94293 0.82211 0.91491 0.90033 0.82454 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.25 13.65 21.45 0.29 -56.96 16 2 C -0.03 -1.50 5.46 84.65 0.46 -1.03 16 3 Si 1.13 50.57 29.90 68.60 2.05 52.63 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.63 -38.69 9.43 25.60 0.24 -38.45 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.20 11.77 3.80 71.24 0.27 12.04 16 10 O -0.34 -18.16 10.12 -93.62 -0.95 -19.11 16 11 C 0.04 1.94 6.69 22.49 0.15 2.09 16 12 C -0.18 -7.26 9.03 22.35 0.20 -7.06 16 13 C -0.16 -4.96 9.31 22.39 0.21 -4.76 16 14 C 0.18 4.83 6.66 38.14 0.25 5.09 16 15 N -0.74 -14.54 5.10 -339.26 -1.73 -16.27 16 16 C 0.10 1.69 3.99 86.38 0.34 2.03 16 17 C 0.13 1.93 0.76 -12.64 -0.01 1.92 16 18 F -0.21 -4.37 15.17 44.97 0.68 -3.69 16 19 C -0.15 -1.82 4.26 28.93 0.12 -1.69 16 20 C -0.11 -1.22 5.60 30.31 0.17 -1.05 16 21 C -0.12 -1.07 5.27 30.10 0.16 -0.91 16 22 C 0.06 0.57 6.44 86.41 0.56 1.13 16 23 N -0.70 -8.02 5.67 -513.67 -2.91 -10.93 16 24 C 0.05 0.59 5.28 87.10 0.46 1.05 16 25 C -0.14 -3.96 9.89 22.39 0.22 -3.74 16 26 C -0.12 -4.14 9.98 22.35 0.22 -3.91 16 27 H 0.26 16.07 7.22 -92.70 -0.67 15.40 16 28 H -0.01 -0.47 7.52 -2.38 -0.02 -0.49 16 29 H -0.01 -0.39 7.53 -2.39 -0.02 -0.41 16 30 H 0.11 4.63 6.29 -2.91 -0.02 4.61 16 31 H 0.14 3.63 6.73 -2.91 -0.02 3.61 16 32 H 0.41 6.89 7.28 -92.71 -0.67 6.22 16 33 H 0.06 1.16 7.94 -2.39 -0.02 1.14 16 34 H 0.08 1.24 7.95 -2.39 -0.02 1.22 16 35 H 0.07 0.96 8.11 -2.39 -0.02 0.94 16 36 H 0.09 0.86 7.58 -2.39 -0.02 0.84 16 37 H 0.06 0.98 7.14 -2.39 -0.02 0.96 16 38 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 0.51 6.65 -2.39 -0.02 0.50 16 41 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 42 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.36 3.18 8.89 -89.69 -0.80 2.38 16 44 H 0.07 0.69 6.78 -2.39 -0.02 0.67 16 45 H 0.08 0.95 6.41 -2.39 -0.02 0.93 16 46 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 47 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -72.92 369.32 1.09 -71.83 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -0.38 Total: 19.77 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 4.04 Total: -37.26 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -4.35 Total: -84.17 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.95 Total: -19.11 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.68 Total: -3.69 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.05 Total: 52.63 kcal Total: -72.92 1.09 -71.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162587453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.175 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds