Wall clock time and date at job start Sat Apr 11 2020 00:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38253 * 119.94176 * 2 1 4 4 C 1.38417 * 120.33801 * 179.97438 * 3 2 1 5 5 C 1.37896 * 120.21852 * 0.02932 * 4 3 2 6 6 C 1.39627 * 119.88057 * 359.96941 * 5 4 3 7 7 C 1.47693 * 120.16435 * 180.02562 * 6 5 4 8 8 O 1.21565 * 119.99312 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00294 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99955 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47175 * 324.99716 * 10 9 7 12 12 C 1.53006 * 109.46998 * 84.99585 * 10 9 7 13 13 C 1.52997 * 109.47204 * 204.99611 * 10 9 7 14 14 C 1.52996 * 109.46894 * 64.99698 * 13 10 9 15 15 C 1.53008 * 109.47120 * 180.02562 * 14 13 10 16 16 C 1.52997 * 109.47301 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47230 * 179.97438 * 16 15 14 18 18 C 1.36939 * 120.00005 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00229 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99772 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00131 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99676 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47044 * 60.00643 * 22 20 18 24 24 H 1.48506 * 109.47073 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47388 * 300.00068 * 22 20 18 26 26 C 1.38276 * 119.94049 * 180.27253 * 2 1 3 27 27 F 1.35099 * 120.11549 * 0.02562 * 26 2 1 28 28 H 1.09005 * 109.47045 * 89.99914 * 1 2 3 29 29 H 1.09002 * 109.47185 * 209.99957 * 1 2 3 30 30 H 1.09003 * 109.47352 * 330.00481 * 1 2 3 31 31 H 1.07995 * 119.83051 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.89099 * 179.97438 * 4 3 2 33 33 H 1.07998 * 120.05775 * 179.97438 * 5 4 3 34 34 H 0.96997 * 119.99935 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47002 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.46955 * 300.00226 * 12 10 9 37 37 H 1.09000 * 109.47050 * 60.00054 * 12 10 9 38 38 H 1.08994 * 109.47510 * 185.00146 * 13 10 9 39 39 H 1.09001 * 109.47096 * 305.00009 * 13 10 9 40 40 H 1.08998 * 109.47867 * 299.99927 * 14 13 10 41 41 H 1.08993 * 109.47122 * 60.00537 * 14 13 10 42 42 H 1.09003 * 109.46865 * 299.99902 * 15 14 13 43 43 H 1.09001 * 109.47171 * 60.00127 * 15 14 13 44 44 H 1.09004 * 109.46818 * 300.00154 * 16 15 14 45 45 H 1.09001 * 109.47187 * 59.99791 * 16 15 14 46 46 H 0.97005 * 119.99948 * 0.02562 * 17 16 15 47 47 H 0.97006 * 120.00247 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1980 0.0000 4 6 3.5811 1.2076 0.0005 5 6 4.2834 0.0208 0.0005 6 6 3.5957 -1.1944 0.0005 7 6 4.3416 -2.4691 0.0010 8 8 3.7397 -3.5253 0.0005 9 7 5.6892 -2.4614 0.0019 10 6 6.4290 -3.7259 0.0019 11 1 5.8855 -4.4649 0.5906 12 6 6.5789 -4.2290 -1.4354 13 6 7.8145 -3.5063 0.6124 14 6 7.6674 -3.1235 2.0864 15 6 9.0530 -2.9032 2.6969 16 6 8.9059 -2.5210 4.1711 17 7 10.2326 -2.3106 4.7557 18 6 10.3519 -1.9578 6.0735 19 1 9.4681 -1.8349 6.6819 20 6 11.6090 -1.7580 6.6273 21 7 12.6861 -1.9072 5.8858 22 14 11.7719 -1.2774 8.4251 23 1 11.1686 -2.3339 9.2765 24 1 13.2086 -1.1247 8.7685 25 1 11.0681 0.0091 8.6593 26 6 2.1971 -1.1982 -0.0057 27 9 1.5227 -2.3688 -0.0118 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6533 2.1311 -0.0004 32 1 4.1129 2.1476 0.0001 33 1 5.3633 0.0313 0.0005 34 1 6.1694 -1.6186 0.0019 35 1 7.1297 -5.1696 -1.4354 36 1 5.5918 -4.3854 -1.8703 37 1 7.1224 -3.4900 -2.0241 38 1 8.3968 -4.4241 0.5318 39 1 8.3242 -2.7046 0.0780 40 1 7.0852 -2.2055 2.1671 41 1 7.1578 -3.9251 2.6209 42 1 9.6356 -3.8209 2.6163 43 1 9.5623 -2.1013 2.1624 44 1 8.3231 -1.6034 4.2520 45 1 8.3968 -3.3231 4.7054 46 1 11.0264 -2.4206 4.2092 47 1 13.5646 -1.7679 6.2729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170908969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:53 Heat of formation + Delta-G solvation = -92.148947 kcal Electronic energy + Delta-G solvation = -26282.164242 eV Core-core repulsion = 22377.739471 eV Total energy + Delta-G solvation = -3904.424771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.95713 -41.26401 -39.62719 -38.03559 -36.84204 -34.88518 -34.16681 -32.87778 -32.02167 -31.18030 -28.83156 -27.94751 -26.03007 -25.32443 -23.65871 -22.83934 -22.10725 -21.93584 -21.46144 -19.14066 -18.86884 -18.16738 -17.78652 -17.02960 -16.91160 -16.68947 -16.24541 -15.97964 -15.76338 -15.45309 -15.35341 -15.26867 -14.59859 -14.39118 -14.36209 -14.23194 -14.18888 -14.04052 -13.42565 -13.27126 -13.03327 -12.90214 -12.85884 -12.84170 -12.71995 -12.46633 -12.31230 -12.25275 -12.20210 -11.88764 -11.82937 -11.50353 -11.41676 -11.02183 -10.93479 -10.26707 -9.92392 -9.69141 -9.01974 -7.96755 -5.26115 -0.34870 0.11856 1.46331 1.49813 1.56107 1.74386 2.05287 2.55159 2.64183 3.15638 3.36230 3.50142 3.58910 3.66144 3.90395 4.00685 4.03745 4.11262 4.13497 4.21207 4.33593 4.39491 4.50764 4.59676 4.63789 4.70293 4.73980 4.76791 4.86470 4.90818 4.91701 4.97629 5.00140 5.03030 5.10252 5.16915 5.24753 5.25420 5.29899 5.32846 5.41838 5.45182 5.52236 5.54372 5.80394 6.26041 6.45252 7.12992 7.31753 8.08318 8.32089 9.26573 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.002252 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.692659 B =12432.880753 C =13737.302191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.137 4.137 3 C -0.060 4.060 4 C -0.126 4.126 5 C -0.062 4.062 6 C -0.192 4.192 7 C 0.553 3.447 8 O -0.576 6.576 9 N -0.703 5.703 10 C 0.143 3.857 11 H 0.065 0.935 12 C -0.157 4.157 13 C -0.115 4.115 14 C -0.106 4.106 15 C -0.111 4.111 16 C 0.148 3.852 17 N -0.749 5.749 18 C -0.252 4.252 19 H 0.072 0.928 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.116 3.884 27 F -0.140 7.140 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.413 0.587 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.018 0.982 45 H 0.010 0.990 46 H 0.375 0.625 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.750 7.706 -19.772 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.138 4.138 3 C -0.078 4.078 4 C -0.144 4.144 5 C -0.080 4.080 6 C -0.196 4.196 7 C 0.341 3.659 8 O -0.457 6.457 9 N -0.355 5.355 10 C 0.039 3.961 11 H 0.084 0.916 12 C -0.215 4.215 13 C -0.153 4.153 14 C -0.145 4.145 15 C -0.149 4.149 16 C 0.021 3.979 17 N -0.391 5.391 18 C -0.383 4.383 19 H 0.090 0.910 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.804 3.196 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.202 1.202 26 C 0.096 3.904 27 F -0.118 7.118 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.189 0.811 32 H 0.189 0.811 33 H 0.177 0.823 34 H 0.251 0.749 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.028 0.972 46 H 0.206 0.794 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.238 6.924 -19.605 30.444 hybrid contribution 0.617 -0.212 0.965 1.165 sum -21.622 6.712 -18.640 29.326 Atomic orbital electron populations 1.20807 0.88472 1.04115 1.03723 1.20288 0.98524 0.91300 1.03721 1.21614 0.94674 0.97508 0.93963 1.21631 0.94315 0.99162 0.99272 1.21559 1.01463 0.90126 0.94876 1.20128 0.92432 0.95092 1.11939 1.18390 0.83051 0.88507 0.75980 1.90800 1.69489 1.33856 1.51566 1.45902 1.04984 1.10693 1.73936 1.21026 0.92423 0.85359 0.97327 0.91645 1.22116 1.01511 1.02525 0.95346 1.21844 0.94732 1.04106 0.94591 1.21436 0.95685 1.01630 0.95704 1.21591 0.97965 1.01401 0.93948 1.20855 0.86711 0.96750 0.93550 1.42617 1.03708 1.83680 1.09137 1.19612 0.92551 1.37837 0.88340 0.90976 1.25615 0.95160 1.03468 1.02611 1.69805 0.97352 1.57706 1.37062 0.85181 0.76319 0.78358 0.79724 1.20517 1.21821 1.20182 1.18055 0.89230 0.81793 1.01340 1.91500 1.80061 1.46974 1.93277 0.89766 0.92473 0.88236 0.81060 0.81105 0.82270 0.74861 0.90262 0.94264 0.90756 0.89286 0.89272 0.91581 0.92929 0.92416 0.91504 0.96353 0.97191 0.79355 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.83 71.23 0.70 -0.60 16 2 C -0.14 -2.12 5.88 -19.85 -0.12 -2.24 16 3 C -0.06 -0.56 9.69 22.32 0.22 -0.34 16 4 C -0.13 -1.10 10.03 22.23 0.22 -0.88 16 5 C -0.06 -0.79 9.54 22.52 0.21 -0.57 16 6 C -0.19 -4.08 5.88 -20.05 -0.12 -4.19 16 7 C 0.55 14.19 7.73 86.74 0.67 14.86 16 8 O -0.58 -20.04 15.00 -3.92 -0.06 -20.10 16 9 N -0.70 -13.25 4.48 -445.56 -2.00 -15.25 16 10 C 0.14 2.79 2.57 44.99 0.12 2.91 16 11 H 0.07 1.64 7.58 -2.39 -0.02 1.62 16 12 C -0.16 -2.71 9.48 71.98 0.68 -2.02 16 13 C -0.11 -2.01 4.75 30.59 0.15 -1.86 16 14 C -0.11 -2.48 5.10 30.60 0.16 -2.32 16 15 C -0.11 -3.37 5.33 30.60 0.16 -3.21 16 16 C 0.15 6.03 6.26 86.38 0.54 6.57 16 17 N -0.75 -39.20 5.60 -343.46 -1.92 -41.13 16 18 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 21 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 22 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.12 2.68 7.22 22.67 0.16 2.84 16 27 F -0.14 -4.12 14.76 44.97 0.66 -3.45 16 28 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.82 7.64 -2.39 -0.02 0.81 16 30 H 0.10 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 32 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.16 1.15 6.40 -2.91 -0.02 1.13 16 34 H 0.41 5.24 6.64 -92.71 -0.62 4.62 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.47 7.75 -2.39 -0.02 1.45 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.37 20.54 7.67 -92.70 -0.71 19.83 16 47 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -78.79 392.15 3.71 -75.08 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.35 Total: 24.47 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 5.06 Total: -8.67 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -3.64 Total: -115.85 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.06 Total: -20.10 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.66 Total: -3.45 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -78.79 3.71 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170908969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.070 kcal (2) G-P(sol) polarization free energy of solvation -78.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds