Wall clock time and date at job start Sat Apr 11 2020 00:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38213 * 120.09049 * 2 1 4 4 F 1.35105 * 119.94804 * 0.02562 * 3 2 1 5 5 C 1.38545 * 120.09551 * 180.27683 * 3 2 1 6 6 C 1.38342 * 120.26939 * 359.74086 * 5 3 2 7 7 C 1.37943 * 120.17231 * 0.02655 * 6 5 3 8 8 C 1.39527 * 120.08781 * 179.79051 * 2 1 3 9 9 C 1.47854 * 120.13477 * 359.97438 * 8 2 1 10 10 O 1.21551 * 119.99645 * 353.48416 * 9 8 2 11 11 N 1.34777 * 120.00356 * 173.20823 * 9 8 2 12 12 C 1.46498 * 120.00216 * 180.27769 * 11 9 8 13 13 H 1.09005 * 109.46647 * 325.00224 * 12 11 9 14 14 C 1.52994 * 109.47169 * 84.99812 * 12 11 9 15 15 C 1.53000 * 109.47127 * 205.00170 * 12 11 9 16 16 C 1.53005 * 109.47050 * 64.99886 * 15 12 11 17 17 C 1.53001 * 109.46524 * 179.97438 * 16 15 12 18 18 C 1.53006 * 109.46728 * 179.97438 * 17 16 15 19 19 N 1.46503 * 109.47242 * 179.97438 * 18 17 16 20 20 C 1.36930 * 119.99959 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00212 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99766 * 180.02562 * 20 19 18 23 23 N 1.31611 * 120.00065 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99779 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47135 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47069 * 119.99767 * 24 22 20 27 27 H 1.48495 * 109.46998 * 239.99518 * 24 22 20 28 28 H 1.08997 * 109.46836 * 263.62488 * 1 2 3 29 29 H 1.08999 * 109.47384 * 23.62543 * 1 2 3 30 30 H 1.08999 * 109.46879 * 143.62732 * 1 2 3 31 31 H 1.07998 * 119.86535 * 179.77177 * 5 3 2 32 32 H 1.07998 * 119.91786 * 179.97438 * 6 5 3 33 33 H 1.08001 * 120.05325 * 179.97438 * 7 6 5 34 34 H 0.96998 * 119.99923 * 0.27678 * 11 9 8 35 35 H 1.08995 * 109.47101 * 60.00096 * 14 12 11 36 36 H 1.09000 * 109.47097 * 180.02562 * 14 12 11 37 37 H 1.09004 * 109.47603 * 300.00065 * 14 12 11 38 38 H 1.08999 * 109.47144 * 185.00073 * 15 12 11 39 39 H 1.09001 * 109.47032 * 305.00243 * 15 12 11 40 40 H 1.09004 * 109.46791 * 299.99610 * 16 15 12 41 41 H 1.08992 * 109.47175 * 60.00319 * 16 15 12 42 42 H 1.08991 * 109.47518 * 299.99395 * 17 16 15 43 43 H 1.09001 * 109.47262 * 60.00537 * 17 16 15 44 44 H 1.08999 * 109.47463 * 300.00356 * 18 17 16 45 45 H 1.09002 * 109.46730 * 59.99907 * 18 17 16 46 46 H 0.96997 * 119.99356 * 0.02562 * 19 18 17 47 47 H 0.96997 * 120.00104 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1959 0.0000 4 9 1.5252 2.3664 0.0005 5 6 3.5854 1.1960 -0.0058 6 6 4.2828 0.0013 -0.0062 7 6 3.6025 -1.1987 -0.0014 8 6 2.2065 -1.2073 0.0044 9 6 1.4722 -2.4906 0.0097 10 8 0.2626 -2.4981 0.1296 11 7 2.1434 -3.6516 -0.1241 12 6 1.4152 -4.9228 -0.1250 13 1 0.5671 -4.8561 0.5566 14 6 0.9112 -5.2209 -1.5385 15 6 2.3489 -6.0458 0.3310 16 6 2.7539 -5.8123 1.7878 17 6 3.6872 -6.9357 2.2439 18 6 4.0927 -6.7019 3.7006 19 7 4.9859 -7.7779 4.1376 20 6 5.4806 -7.7809 5.4144 21 1 5.2128 -6.9898 6.0992 22 6 6.3273 -8.8001 5.8282 23 7 6.6541 -9.7638 4.9935 24 14 7.0028 -8.8038 7.5698 25 1 6.4886 -7.6191 8.3027 26 1 6.5711 -10.0427 8.2656 27 1 8.4862 -8.7524 7.5255 28 1 -0.3633 -0.1141 1.0213 29 1 -0.3634 0.9415 -0.4118 30 1 -0.3633 -0.8275 -0.6094 31 1 4.1231 2.1326 -0.0095 32 1 5.3628 0.0080 -0.0111 33 1 4.1489 -2.1303 -0.0021 34 1 3.1086 -3.6456 -0.2198 35 1 1.7592 -5.2875 -2.2200 36 1 0.3690 -6.1665 -1.5390 37 1 0.2459 -4.4208 -1.8633 38 1 1.8346 -7.0030 0.2457 39 1 3.2399 -6.0549 -0.2968 40 1 3.2683 -4.8551 1.8730 41 1 1.8630 -5.8033 2.4156 42 1 3.1725 -7.8927 2.1589 43 1 4.5782 -6.9452 1.6161 44 1 4.6076 -5.7449 3.7854 45 1 3.2019 -6.6921 4.3286 46 1 5.2267 -8.4881 3.5224 47 1 7.2454 -10.4762 5.2828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170922187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:00 Heat of formation + Delta-G solvation = -86.692191 kcal Electronic energy + Delta-G solvation = -26280.377613 eV Core-core repulsion = 22376.189465 eV Total energy + Delta-G solvation = -3904.188149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.98144 -41.48776 -39.43354 -37.99458 -36.85740 -34.87059 -33.72550 -33.31044 -32.19392 -30.87581 -28.80661 -28.13956 -25.97379 -25.15561 -23.71778 -22.86916 -22.06554 -21.88724 -21.50640 -19.23430 -19.10071 -17.82410 -17.15746 -17.03044 -16.85282 -16.77285 -16.67194 -16.22307 -16.02752 -15.43603 -15.27478 -15.10569 -14.64186 -14.42466 -14.36411 -14.24656 -14.10359 -13.89421 -13.45994 -13.20307 -13.02441 -12.96556 -12.89646 -12.84883 -12.80310 -12.44510 -12.30973 -12.25064 -12.10851 -11.88096 -11.79457 -11.46902 -11.38323 -10.94688 -10.71536 -10.24829 -9.90708 -9.71102 -9.01153 -7.96761 -5.25745 -0.33937 0.09110 1.46998 1.47859 1.58181 1.74512 2.08543 2.55252 2.63935 3.19838 3.36823 3.54774 3.64225 3.66991 3.85965 3.93696 4.04989 4.07526 4.15433 4.24741 4.37198 4.43274 4.58476 4.60322 4.63506 4.66644 4.68257 4.79230 4.86096 4.89409 4.94833 5.00424 5.03855 5.06899 5.11945 5.13107 5.23510 5.28838 5.30287 5.34986 5.46664 5.46805 5.54825 5.60434 5.76991 6.26603 6.51786 7.18424 7.32271 8.09130 8.32393 9.27093 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.002226 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.676503 B =12576.897280 C =13924.507425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 C 0.066 3.934 4 F -0.144 7.144 5 C -0.119 4.119 6 C -0.098 4.098 7 C -0.085 4.085 8 C -0.129 4.129 9 C 0.556 3.444 10 O -0.563 6.563 11 N -0.705 5.705 12 C 0.145 3.855 13 H 0.070 0.930 14 C -0.157 4.157 15 C -0.117 4.117 16 C -0.106 4.106 17 C -0.112 4.112 18 C 0.148 3.852 19 N -0.749 5.749 20 C -0.248 4.248 21 H 0.073 0.927 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.974 3.026 25 H -0.267 1.267 26 H -0.292 1.292 27 H -0.290 1.290 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.174 0.826 33 H 0.160 0.840 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.019 0.981 45 H 0.011 0.989 46 H 0.374 0.626 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.849 20.815 -17.839 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C 0.047 3.953 4 F -0.123 7.123 5 C -0.138 4.138 6 C -0.115 4.115 7 C -0.104 4.104 8 C -0.132 4.132 9 C 0.344 3.656 10 O -0.444 6.444 11 N -0.357 5.357 12 C 0.041 3.959 13 H 0.088 0.912 14 C -0.216 4.216 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.150 4.150 18 C 0.021 3.979 19 N -0.392 5.392 20 C -0.380 4.380 21 H 0.091 0.909 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.803 3.197 25 H -0.192 1.192 26 H -0.219 1.219 27 H -0.217 1.217 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.181 0.819 32 H 0.191 0.809 33 H 0.177 0.823 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.029 0.971 46 H 0.206 0.794 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.729 20.900 -17.584 28.674 hybrid contribution 0.573 -0.225 0.887 1.079 sum -8.157 20.674 -16.697 27.798 Atomic orbital electron populations 1.20899 0.89785 1.03140 1.03295 1.20131 0.97698 0.91407 0.98816 1.17644 0.91008 0.80424 1.06237 1.91474 1.80746 1.45818 1.94215 1.21711 0.91187 1.01871 0.99030 1.21387 1.02272 0.90147 0.97722 1.21737 0.91749 1.00762 0.96153 1.19667 0.94597 0.91960 1.06991 1.18352 0.86791 0.84397 0.76059 1.90723 1.15154 1.87524 1.51014 1.45958 1.11613 1.05096 1.73061 1.21002 0.94969 0.82213 0.97764 0.91162 1.22118 1.01673 1.02014 0.95757 1.21853 1.00012 0.98032 0.95547 1.21436 0.98612 0.97976 0.96363 1.21600 0.99625 0.99247 0.94531 1.20867 0.91727 0.90532 0.94743 1.42640 1.56364 1.28198 1.11980 1.19680 1.21493 1.06455 0.90334 0.90916 1.25599 1.01596 0.97467 1.02241 1.69813 1.41088 1.14650 1.36458 0.85059 0.77575 0.77425 0.79626 1.19162 1.21925 1.21697 0.91213 0.91588 0.89499 0.81929 0.80861 0.82256 0.74985 0.91082 0.90485 0.93826 0.89468 0.89528 0.91434 0.92759 0.92503 0.91650 0.96296 0.97112 0.79390 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.60 71.24 0.61 -1.88 16 2 C -0.08 -1.61 5.92 -19.56 -0.12 -1.72 16 3 C 0.07 1.20 7.24 22.34 0.16 1.36 16 4 F -0.14 -2.87 16.37 44.97 0.74 -2.14 16 5 C -0.12 -1.45 10.02 22.37 0.22 -1.23 16 6 C -0.10 -0.92 10.03 22.22 0.22 -0.70 16 7 C -0.09 -1.01 9.52 22.53 0.21 -0.79 16 8 C -0.13 -2.36 5.87 -20.09 -0.12 -2.48 16 9 C 0.56 11.75 7.66 86.79 0.67 12.41 16 10 O -0.56 -15.66 13.01 -3.88 -0.05 -15.71 16 11 N -0.70 -11.14 4.48 -445.41 -2.00 -13.13 16 12 C 0.14 2.43 2.57 44.99 0.12 2.54 16 13 H 0.07 1.51 7.58 -2.38 -0.02 1.49 16 14 C -0.16 -2.34 9.48 71.98 0.68 -1.66 16 15 C -0.12 -1.84 4.75 30.60 0.15 -1.69 16 16 C -0.11 -2.28 5.10 30.60 0.16 -2.13 16 17 C -0.11 -3.28 5.33 30.60 0.16 -3.12 16 18 C 0.15 5.87 6.26 86.38 0.54 6.42 16 19 N -0.75 -38.69 5.60 -343.43 -1.92 -40.61 16 20 C -0.25 -14.09 9.99 84.04 0.84 -13.25 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 23 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 24 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.28 7.46 -2.39 -0.02 1.26 16 30 H 0.09 2.10 5.87 -2.39 -0.01 2.09 16 31 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 32 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 33 H 0.16 1.00 6.45 -2.91 -0.02 0.98 16 34 H 0.41 4.31 6.68 -92.71 -0.62 3.69 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.37 7.75 -2.38 -0.02 1.35 16 41 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.37 20.30 7.67 -92.71 -0.71 19.59 16 47 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -72.64 388.53 3.70 -68.94 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.35 Total: 25.50 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.98 Total: -11.91 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -3.64 Total: -112.96 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.05 Total: -15.71 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.74 Total: -2.14 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -72.64 3.70 -68.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170922187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.752 kcal (2) G-P(sol) polarization free energy of solvation -72.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds