Wall clock time and date at job start Sat Apr 11 2020 00:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46983 * 2 1 4 4 C 1.34718 * 117.00014 * 180.02562 * 3 2 1 5 5 O 1.21469 * 119.99715 * 359.97438 * 4 3 2 6 6 C 1.47750 * 119.99771 * 179.97438 * 4 3 2 7 7 N 1.34828 * 126.01287 * 179.71072 * 6 4 3 8 8 C 1.30059 * 107.11605 * 179.83251 * 7 6 4 9 9 N 1.35214 * 107.84863 * 0.49088 * 8 7 6 10 10 N 1.28227 * 108.43875 * 359.62335 * 9 8 7 11 11 C 1.46775 * 123.41576 * 179.52950 * 9 8 7 12 12 C 1.53358 * 108.30328 * 343.43226 * 11 9 8 13 13 N 1.46981 * 109.69887 * 49.98909 * 12 11 9 14 14 C 1.46899 * 110.99729 * 165.32059 * 13 12 11 15 15 H 1.09009 * 109.46963 * 303.41373 * 14 13 12 16 16 C 1.52998 * 109.47465 * 63.41505 * 14 13 12 17 17 C 1.52998 * 109.47217 * 183.41889 * 14 13 12 18 18 C 1.53004 * 109.47170 * 63.11251 * 17 14 13 19 19 C 1.50705 * 109.47003 * 175.06142 * 18 17 14 20 20 H 1.07999 * 120.00203 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99602 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00637 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99805 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47052 * 59.99668 * 23 21 19 25 25 H 1.48498 * 109.46939 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46782 * 299.99791 * 23 21 19 27 27 C 1.47353 * 111.04562 * 289.29894 * 13 12 11 28 28 H 1.09007 * 109.47259 * 299.99880 * 1 2 3 29 29 H 1.08999 * 109.47153 * 59.99749 * 1 2 3 30 30 H 1.08996 * 109.46967 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47044 * 239.99919 * 2 1 3 32 32 H 1.09000 * 109.46810 * 119.99361 * 2 1 3 33 33 H 1.09001 * 109.69631 * 103.14454 * 11 9 8 34 34 H 1.08995 * 109.69874 * 223.74024 * 11 9 8 35 35 H 1.09000 * 109.43765 * 289.91367 * 12 11 9 36 36 H 1.09001 * 109.39084 * 170.03358 * 12 11 9 37 37 H 1.08996 * 109.47009 * 305.88450 * 16 14 13 38 38 H 1.09001 * 109.47098 * 65.88529 * 16 14 13 39 39 H 1.09005 * 109.47052 * 185.88056 * 16 14 13 40 40 H 1.08999 * 109.47937 * 183.11333 * 17 14 13 41 41 H 1.09003 * 109.47093 * 303.11412 * 17 14 13 42 42 H 1.09002 * 109.46877 * 295.05684 * 18 17 14 43 43 H 1.09001 * 109.46940 * 55.05878 * 18 17 14 44 44 H 0.96996 * 120.00592 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.73637 * 290.18613 * 27 13 12 46 46 H 1.08994 * 109.73775 * 169.48549 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5456 -0.0005 5 8 4.0895 0.5822 -0.0005 6 6 3.9142 2.9109 -0.0011 7 7 5.2250 3.2267 0.0038 8 6 5.3060 4.5248 -0.0024 9 7 4.0472 5.0186 -0.0001 10 7 3.2254 4.0343 -0.0007 11 6 3.7422 6.4543 0.0045 12 6 5.0074 7.2141 0.4213 13 7 6.1488 6.7547 -0.3828 14 6 7.2825 7.6814 -0.2651 15 1 6.9657 8.6823 -0.5587 16 6 7.7728 7.7062 1.1840 17 6 8.4178 7.2171 -1.1797 18 6 7.9519 7.2666 -2.6363 19 6 9.1054 6.9262 -3.5444 20 1 10.0740 6.6979 -3.1248 21 6 8.9244 6.9074 -4.9111 22 7 7.7451 7.1858 -5.4223 23 14 10.3544 6.4862 -6.0369 24 1 10.8475 5.1215 -5.7214 25 1 9.9025 6.5353 -7.4506 26 1 11.4501 7.4677 -5.8336 27 6 6.5443 5.3860 -0.0067 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.4370 6.7682 -0.9937 34 1 2.9411 6.6574 0.7151 35 1 5.2098 7.0304 1.4765 36 1 4.8575 8.2819 0.2615 37 1 6.9378 7.9353 1.8461 38 1 8.1862 6.7318 1.4444 39 1 8.5436 8.4690 1.2938 40 1 9.2791 7.8726 -1.0514 41 1 8.6971 6.1954 -0.9221 42 1 7.1475 6.5461 -2.7851 43 1 7.5901 8.2683 -2.8682 44 1 7.6179 7.1729 -6.3838 45 1 6.9918 5.3922 0.9873 46 1 7.2603 4.9976 -0.7309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:16 Heat of formation + Delta-G solvation = 12.129075 kcal Electronic energy + Delta-G solvation = -27446.048072 eV Core-core repulsion = 23566.065097 eV Total energy + Delta-G solvation = -3879.982975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.64960 -40.34558 -38.98854 -36.73978 -35.20170 -33.70393 -32.71851 -32.02758 -30.87239 -30.01446 -29.15599 -26.51775 -25.42713 -24.65613 -23.59229 -22.94022 -21.50209 -21.09300 -20.33327 -19.19921 -17.87317 -17.39849 -17.13316 -16.57246 -16.53235 -16.19486 -15.82962 -15.08710 -14.60744 -14.49658 -14.22162 -14.02739 -13.74911 -13.37546 -13.04210 -13.01860 -12.90129 -12.61802 -12.39793 -12.18693 -12.07100 -11.87117 -11.85871 -11.49594 -11.37518 -11.20819 -10.92163 -10.84500 -10.74464 -10.52379 -10.47437 -10.42808 -10.31459 -9.76565 -9.43639 -9.27781 -8.99461 -8.35291 -8.22247 -5.93942 -3.96009 1.13049 1.93774 1.95828 2.36473 3.09674 3.36649 3.41431 3.43647 3.52041 3.98314 4.15753 4.46360 4.50310 4.58687 4.67931 4.71798 4.78299 5.00438 5.02646 5.11053 5.16557 5.27079 5.31856 5.37376 5.41997 5.43887 5.48979 5.51058 5.68176 5.68397 5.86529 5.93598 6.03054 6.12061 6.13125 6.31045 6.41997 6.45529 6.62546 6.94229 7.03776 7.17331 7.52109 7.76533 7.94505 8.06029 8.10870 8.48648 9.12111 9.67751 11.16831 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.003118 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.760993 B = 8978.049537 C =10424.242023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.342 6.342 4 C 0.574 3.426 5 O -0.479 6.479 6 C 0.142 3.858 7 N -0.448 5.448 8 C 0.233 3.767 9 N -0.286 5.286 10 N -0.245 5.245 11 C 0.124 3.876 12 C 0.033 3.967 13 N -0.521 5.521 14 C 0.086 3.914 15 H 0.090 0.910 16 C -0.190 4.190 17 C -0.109 4.109 18 C 0.031 3.969 19 C -0.523 4.523 20 H 0.052 0.948 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.887 3.113 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.132 3.868 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.012 0.988 44 H 0.259 0.741 45 H 0.075 0.925 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 -3.411 16.165 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.257 6.257 4 C 0.414 3.586 5 O -0.361 6.361 6 C -0.133 4.133 7 N -0.174 5.174 8 C -0.043 4.043 9 N -0.083 5.083 10 N -0.088 5.088 11 C 0.004 3.996 12 C -0.097 4.097 13 N -0.246 5.246 14 C -0.021 4.021 15 H 0.108 0.892 16 C -0.249 4.249 17 C -0.147 4.147 18 C -0.006 4.006 19 C -0.562 4.562 20 H 0.070 0.930 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.715 3.285 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.204 1.204 27 C 0.003 3.997 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.537 -4.005 15.500 20.965 hybrid contribution 1.064 -0.128 -0.019 1.072 sum -12.473 -4.132 15.481 20.305 Atomic orbital electron populations 1.21807 0.92285 1.03004 1.03779 1.23135 0.95523 0.79439 1.03006 1.86593 1.22361 1.32694 1.84076 1.18664 0.80872 0.85720 0.73375 1.90888 1.60520 1.40387 1.44347 1.22180 0.87550 0.91294 1.12307 1.70886 1.16776 1.10306 1.19421 1.24814 0.89248 0.89563 1.00646 1.47416 1.04701 1.07973 1.48224 1.74117 1.21577 0.95058 1.18041 1.22501 0.99520 0.71853 1.05745 1.22557 0.90073 1.00810 0.96211 1.62395 1.07533 1.01191 1.53435 1.21985 0.90511 0.95797 0.93836 0.89216 1.22562 1.01605 1.02613 0.98101 1.21827 0.94845 0.99819 0.98178 1.18987 0.96410 0.97444 0.87752 1.21273 0.96581 1.46926 0.91380 0.93020 1.24986 0.95451 0.95494 0.98337 1.69950 1.22041 1.49338 1.11949 0.86742 0.82898 0.79003 0.79847 1.20264 1.21395 1.20367 1.20908 0.89921 0.86182 1.02734 0.91387 0.91249 0.90040 0.90770 0.90897 0.87069 0.87495 0.93158 0.87060 0.93137 0.92332 0.91520 0.92404 0.93081 0.95459 0.96959 0.93100 0.90726 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.61 6.20 37.16 0.23 0.84 16 3 O -0.34 -4.63 10.23 -40.54 -0.41 -5.04 16 4 C 0.57 9.39 7.97 34.62 0.28 9.67 16 5 O -0.48 -8.68 16.88 -19.24 -0.32 -9.01 16 6 C 0.14 2.48 7.99 -155.93 -1.25 1.23 16 7 N -0.45 -8.25 11.40 -8.43 -0.10 -8.35 16 8 C 0.23 3.75 7.79 -155.55 -1.21 2.54 16 9 N -0.29 -4.14 3.76 -57.91 -0.22 -4.36 16 10 N -0.24 -3.91 12.18 32.14 0.39 -3.52 16 11 C 0.12 1.25 7.46 -3.71 -0.03 1.22 16 12 C 0.03 0.31 4.80 -3.59 -0.02 0.30 16 13 N -0.52 -7.08 4.13 -227.31 -0.94 -8.02 16 14 C 0.09 1.17 2.36 -67.72 -0.16 1.01 16 15 H 0.09 1.21 8.02 -51.92 -0.42 0.80 16 16 C -0.19 -2.01 8.50 37.16 0.32 -1.69 16 17 C -0.11 -1.97 4.36 -26.73 -0.12 -2.08 16 18 C 0.03 0.76 4.78 -27.88 -0.13 0.62 16 19 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 23 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.13 1.90 5.02 -4.66 -0.02 1.87 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.43 6.99 -51.93 -0.36 0.06 16 36 H 0.11 0.84 7.93 -51.93 -0.41 0.43 16 37 H 0.05 0.45 6.54 -51.93 -0.34 0.11 16 38 H 0.06 0.63 6.61 -51.93 -0.34 0.28 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.91 6.38 -51.93 -0.33 0.58 16 42 H 0.03 0.72 7.84 -51.93 -0.41 0.31 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.08 0.91 6.19 -51.93 -0.32 0.59 16 46 H 0.13 2.14 6.62 -51.93 -0.34 1.79 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -34.76 375.39 -9.42 -44.17 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -7.05 Total: -3.86 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.14 Total: 1.66 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.13 Total: -50.33 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.74 Total: -14.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.76 -9.42 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.302 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds