Wall clock time and date at job start Sat Apr 11 2020 00:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46983 * 2 1 4 4 C 1.34718 * 117.00014 * 180.02562 * 3 2 1 5 5 O 1.21469 * 119.99715 * 359.97438 * 4 3 2 6 6 C 1.47750 * 119.99771 * 179.97438 * 4 3 2 7 7 N 1.34828 * 126.01287 * 179.71072 * 6 4 3 8 8 C 1.30059 * 107.11605 * 179.83251 * 7 6 4 9 9 N 1.35214 * 107.84863 * 0.49088 * 8 7 6 10 10 N 1.28227 * 108.43875 * 359.62335 * 9 8 7 11 11 C 1.46775 * 123.41576 * 179.52950 * 9 8 7 12 12 C 1.53358 * 108.30328 * 343.43226 * 11 9 8 13 13 N 1.46981 * 109.69887 * 49.98909 * 12 11 9 14 14 C 1.46899 * 110.99729 * 165.32059 * 13 12 11 15 15 H 1.09009 * 109.46963 * 303.41373 * 14 13 12 16 16 C 1.52998 * 109.47465 * 63.41505 * 14 13 12 17 17 C 1.52998 * 109.47217 * 183.41889 * 14 13 12 18 18 C 1.53004 * 109.47170 * 63.11251 * 17 14 13 19 19 C 1.50705 * 109.47003 * 175.06142 * 18 17 14 20 20 H 1.07999 * 120.00203 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99602 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00637 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99805 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47052 * 59.99668 * 23 21 19 25 25 H 1.48498 * 109.46939 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46782 * 299.99791 * 23 21 19 27 27 C 1.47353 * 111.04562 * 289.29894 * 13 12 11 28 28 H 1.09007 * 109.47259 * 299.99880 * 1 2 3 29 29 H 1.08999 * 109.47153 * 59.99749 * 1 2 3 30 30 H 1.08996 * 109.46967 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47044 * 239.99919 * 2 1 3 32 32 H 1.09000 * 109.46810 * 119.99361 * 2 1 3 33 33 H 1.09001 * 109.69631 * 103.14454 * 11 9 8 34 34 H 1.08995 * 109.69874 * 223.74024 * 11 9 8 35 35 H 1.09000 * 109.43765 * 289.91367 * 12 11 9 36 36 H 1.09001 * 109.39084 * 170.03358 * 12 11 9 37 37 H 1.08996 * 109.47009 * 305.88450 * 16 14 13 38 38 H 1.09001 * 109.47098 * 65.88529 * 16 14 13 39 39 H 1.09005 * 109.47052 * 185.88056 * 16 14 13 40 40 H 1.08999 * 109.47937 * 183.11333 * 17 14 13 41 41 H 1.09003 * 109.47093 * 303.11412 * 17 14 13 42 42 H 1.09002 * 109.46877 * 295.05684 * 18 17 14 43 43 H 1.09001 * 109.46940 * 55.05878 * 18 17 14 44 44 H 0.96996 * 120.00592 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.73637 * 290.18613 * 27 13 12 46 46 H 1.08994 * 109.73775 * 169.48549 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5456 -0.0005 5 8 4.0895 0.5822 -0.0005 6 6 3.9142 2.9109 -0.0011 7 7 5.2250 3.2267 0.0038 8 6 5.3060 4.5248 -0.0024 9 7 4.0472 5.0186 -0.0001 10 7 3.2254 4.0343 -0.0007 11 6 3.7422 6.4543 0.0045 12 6 5.0074 7.2141 0.4213 13 7 6.1488 6.7547 -0.3828 14 6 7.2825 7.6814 -0.2651 15 1 6.9657 8.6823 -0.5587 16 6 7.7728 7.7062 1.1840 17 6 8.4178 7.2171 -1.1797 18 6 7.9519 7.2666 -2.6363 19 6 9.1054 6.9262 -3.5444 20 1 10.0740 6.6979 -3.1248 21 6 8.9244 6.9074 -4.9111 22 7 7.7451 7.1858 -5.4223 23 14 10.3544 6.4862 -6.0369 24 1 10.8475 5.1215 -5.7214 25 1 9.9025 6.5353 -7.4506 26 1 11.4501 7.4677 -5.8336 27 6 6.5443 5.3860 -0.0067 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.4370 6.7682 -0.9937 34 1 2.9411 6.6574 0.7151 35 1 5.2098 7.0304 1.4765 36 1 4.8575 8.2819 0.2615 37 1 6.9378 7.9353 1.8461 38 1 8.1862 6.7318 1.4444 39 1 8.5436 8.4690 1.2938 40 1 9.2791 7.8726 -1.0514 41 1 8.6971 6.1954 -0.9221 42 1 7.1475 6.5461 -2.7851 43 1 7.5901 8.2683 -2.8682 44 1 7.6179 7.1729 -6.3838 45 1 6.9918 5.3922 0.9873 46 1 7.2603 4.9976 -0.7309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:15 Heat of formation + Delta-G solvation = -10.382546 kcal Electronic energy + Delta-G solvation = -27447.024250 eV Core-core repulsion = 23566.065097 eV Total energy + Delta-G solvation = -3880.959152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.84796 -41.50690 -40.05068 -37.88600 -36.41421 -35.33030 -34.29421 -32.91795 -32.16188 -31.17655 -30.42565 -27.59540 -27.08124 -25.81402 -24.68339 -23.81774 -23.09088 -22.26091 -21.62739 -20.31556 -19.03458 -18.53259 -18.32809 -18.25799 -17.64659 -17.57434 -16.92334 -16.52814 -16.05685 -15.66694 -15.20961 -15.01204 -14.78297 -14.63609 -14.53437 -14.05469 -13.88467 -13.66640 -13.58342 -13.35990 -13.11134 -13.06558 -13.00111 -12.79329 -12.59083 -12.45753 -12.41317 -12.27426 -12.16113 -11.82545 -11.74038 -11.63163 -11.56694 -11.42676 -11.19614 -10.92214 -10.53782 -10.46742 -9.28197 -8.13295 -6.22224 -0.11211 0.72660 0.87922 1.32303 1.39892 1.42421 1.49432 1.82616 2.43686 2.48363 2.89220 3.13950 3.20201 3.50471 3.64075 3.97644 4.00871 4.02413 4.03376 4.14473 4.27536 4.29538 4.31595 4.45602 4.49495 4.55898 4.64139 4.71772 4.74980 4.81698 4.90728 4.97666 4.99436 5.02785 5.12882 5.18781 5.28781 5.31502 5.36633 5.47523 5.60896 5.88927 5.92092 6.03948 6.10359 6.34551 6.36336 6.83534 6.98728 7.46050 8.97233 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.003118 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.760993 B = 8978.049537 C =10424.242023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.341 6.341 4 C 0.577 3.423 5 O -0.507 6.507 6 C 0.118 3.882 7 N -0.485 5.485 8 C 0.225 3.775 9 N -0.279 5.279 10 N -0.240 5.240 11 C 0.114 3.886 12 C 0.035 3.965 13 N -0.547 5.547 14 C 0.096 3.904 15 H 0.094 0.906 16 C -0.180 4.180 17 C -0.101 4.101 18 C 0.041 3.959 19 C -0.541 4.541 20 H 0.055 0.945 21 C 0.000 4.000 22 N -0.931 5.931 23 Si 0.952 3.048 24 H -0.273 1.273 25 H -0.287 1.287 26 H -0.265 1.265 27 C 0.140 3.860 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.049 0.951 42 H -0.004 1.004 43 H -0.012 1.012 44 H 0.259 0.741 45 H 0.100 0.900 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 -2.435 17.859 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.256 6.256 4 C 0.418 3.582 5 O -0.392 6.392 6 C -0.157 4.157 7 N -0.211 5.211 8 C -0.051 4.051 9 N -0.076 5.076 10 N -0.085 5.085 11 C -0.004 4.004 12 C -0.093 4.093 13 N -0.272 5.272 14 C -0.011 4.011 15 H 0.112 0.888 16 C -0.239 4.239 17 C -0.138 4.138 18 C 0.004 3.996 19 C -0.579 4.579 20 H 0.074 0.926 21 C -0.197 4.197 22 N -0.572 5.572 23 Si 0.778 3.222 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.189 1.189 27 C 0.011 3.989 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.015 0.985 43 H 0.007 0.993 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.030 -3.004 17.212 22.408 hybrid contribution 1.136 -0.405 -0.573 1.335 sum -12.894 -3.409 16.638 21.324 Atomic orbital electron populations 1.21844 0.89650 1.04778 1.03841 1.23560 0.97489 0.77733 1.03408 1.86599 1.20628 1.35066 1.83334 1.18682 0.81597 0.85199 0.72760 1.90854 1.61324 1.41060 1.45986 1.22441 0.87549 0.92188 1.13535 1.70815 1.17763 1.11929 1.20623 1.25043 0.90317 0.89262 1.00448 1.47833 1.04013 1.09133 1.46647 1.74066 1.21682 0.95074 1.17633 1.22990 1.01153 0.69338 1.06921 1.22729 0.87872 1.02002 0.96696 1.62268 1.08677 1.00704 1.55587 1.21763 0.89027 0.95450 0.94874 0.88813 1.22449 1.02756 1.02903 0.95764 1.21639 0.96828 1.00175 0.95184 1.18795 0.94499 0.94750 0.91528 1.21829 0.97705 1.46110 0.92295 0.92632 1.25871 0.98051 0.95572 1.00213 1.70087 1.24159 1.50771 1.12166 0.85699 0.79876 0.79044 0.77627 1.19782 1.21228 1.18945 1.20789 0.88680 0.86468 1.03011 0.91003 0.91456 0.87346 0.90796 0.90203 0.87298 0.83660 0.90921 0.84333 0.90447 0.92448 0.90797 0.92109 0.93224 0.98549 0.99337 0.93200 0.88285 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 10.29 71.98 0.74 -0.99 16 2 C 0.05 0.97 6.20 71.98 0.45 1.42 16 3 O -0.34 -9.29 10.23 -56.28 -0.58 -9.87 16 4 C 0.58 19.43 7.97 70.34 0.56 19.99 16 5 O -0.51 -19.09 16.88 19.94 0.34 -18.75 16 6 C 0.12 4.19 7.99 136.93 1.09 5.29 16 7 N -0.48 -18.38 11.40 -180.60 -2.06 -20.44 16 8 C 0.22 7.25 7.79 138.25 1.08 8.32 16 9 N -0.28 -7.80 3.76 -337.12 -1.27 -9.07 16 10 N -0.24 -7.59 12.18 -52.23 -0.64 -8.23 16 11 C 0.11 2.01 7.46 86.45 0.64 2.66 16 12 C 0.04 0.56 4.80 86.41 0.41 0.97 16 13 N -0.55 -14.15 4.13 -873.07 -3.61 -17.75 16 14 C 0.10 2.44 2.36 44.91 0.11 2.54 16 15 H 0.09 2.33 8.02 -2.38 -0.02 2.31 16 16 C -0.18 -3.19 8.50 71.98 0.61 -2.57 16 17 C -0.10 -3.62 4.36 30.59 0.13 -3.48 16 18 C 0.04 2.07 4.78 29.85 0.14 2.21 16 19 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 20 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 21 C 0.00 0.02 5.46 84.65 0.46 0.48 16 22 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 23 Si 0.95 45.09 29.54 68.60 2.03 47.11 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 27 C 0.14 3.98 5.02 85.52 0.43 4.41 16 28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 0.89 6.99 -2.39 -0.02 0.88 16 36 H 0.14 1.50 7.93 -2.39 -0.02 1.48 16 37 H 0.08 1.00 6.54 -2.39 -0.02 0.98 16 38 H 0.06 1.05 6.61 -2.39 -0.02 1.03 16 39 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 1.78 6.38 -2.39 -0.02 1.77 16 42 H 0.00 -0.22 7.84 -2.39 -0.02 -0.24 16 43 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 45 H 0.10 2.26 6.19 -2.39 -0.01 2.25 16 46 H 0.10 3.37 6.62 -2.39 -0.02 3.36 16 Total: -1.00 -78.90 375.39 2.58 -76.32 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.98 Total: 6.71 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 7.10 Total: 11.00 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -7.29 Total: -112.52 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.24 Total: -28.62 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.90 2.58 -76.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.936 kcal (2) G-P(sol) polarization free energy of solvation -78.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds