Wall clock time and date at job start Sat Apr 11 2020 00:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47370 * 2 1 4 4 C 1.50700 * 109.46716 * 119.99868 * 2 1 3 5 5 N 1.29028 * 124.91993 * 120.00236 * 4 2 1 6 6 C 1.31775 * 117.12945 * 179.73307 * 5 4 2 7 7 C 1.50702 * 122.75054 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.46938 * 274.99539 * 7 6 5 9 9 C 1.46906 * 111.00052 * 66.04693 * 8 7 6 10 10 C 1.46902 * 111.00022 * 189.99710 * 8 7 6 11 11 C 1.52994 * 109.47223 * 295.00400 * 10 8 7 12 12 C 1.53004 * 109.47055 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47323 * 59.99582 * 12 11 10 14 14 C 1.50705 * 109.46868 * 60.00096 * 13 12 11 15 15 H 1.07993 * 120.00072 * 245.42811 * 14 13 12 16 16 C 1.37873 * 119.99760 * 65.42852 * 14 13 12 17 17 N 1.31511 * 120.00154 * 9.54218 * 16 14 13 18 18 Si 1.86807 * 119.99965 * 189.54654 * 16 14 13 19 19 H 1.48502 * 109.46916 * 94.98690 * 18 16 14 20 20 H 1.48494 * 109.46905 * 214.99082 * 18 16 14 21 21 H 1.48504 * 109.46790 * 334.99100 * 18 16 14 22 22 C 1.52998 * 109.47142 * 300.00455 * 13 12 11 23 23 C 1.52997 * 109.46936 * 174.99842 * 10 8 7 24 24 C 1.33641 * 114.50000 * 359.97438 * 6 5 4 25 25 S 1.70986 * 124.91519 * 299.69332 * 4 2 1 26 26 H 1.09001 * 109.46873 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47314 * 300.00497 * 1 2 3 28 28 H 1.08999 * 109.46950 * 60.00302 * 1 2 3 29 29 H 1.08995 * 109.47314 * 239.99503 * 2 1 3 30 30 H 1.08994 * 109.47477 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47147 * 300.00079 * 3 2 1 32 32 H 1.09005 * 109.46765 * 59.99393 * 3 2 1 33 33 H 1.08998 * 109.47471 * 34.99958 * 7 6 5 34 34 H 1.09003 * 109.46954 * 155.00115 * 7 6 5 35 35 H 1.08995 * 109.47003 * 59.99573 * 9 8 7 36 36 H 1.08991 * 109.47223 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.46596 * 300.00156 * 9 8 7 38 38 H 1.09003 * 109.46492 * 55.00710 * 10 8 7 39 39 H 1.08999 * 109.47000 * 299.99289 * 11 10 8 40 40 H 1.08996 * 109.46994 * 60.00000 * 11 10 8 41 41 H 1.09003 * 109.46585 * 300.00264 * 12 11 10 42 42 H 1.08990 * 109.47275 * 179.97438 * 12 11 10 43 43 H 1.09000 * 109.47054 * 180.02562 * 13 12 11 44 44 H 0.97007 * 119.99906 * 179.97438 * 17 16 14 45 45 H 1.08995 * 109.47110 * 299.99395 * 22 13 12 46 46 H 1.09005 * 109.47295 * 179.97438 * 22 13 12 47 47 H 1.09003 * 109.47756 * 300.00347 * 23 10 8 48 48 H 1.08999 * 109.47401 * 60.00641 * 23 10 8 49 49 H 1.07995 * 126.03797 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7772 -1.7639 1.2228 6 6 3.1326 -2.2571 2.3920 7 6 4.0000 -3.4816 2.5306 8 7 3.1616 -4.6859 2.4617 9 6 2.5598 -4.8329 1.1296 10 6 3.9294 -5.8836 2.8275 11 6 5.0305 -6.1195 1.7917 12 6 5.8307 -7.3666 2.1731 13 6 4.8982 -8.5790 2.2113 14 6 4.2761 -8.7772 0.8530 15 1 3.2113 -8.6522 0.7234 16 6 5.0664 -9.1182 -0.2240 17 7 6.3241 -9.4536 -0.0367 18 14 4.3506 -9.1037 -1.9495 19 1 4.6462 -7.8004 -2.5970 20 1 4.9565 -10.2009 -2.7458 21 1 2.8802 -9.2983 -1.8770 22 6 3.7971 -8.3431 3.2470 23 6 2.9965 -7.0957 2.8652 24 6 2.6616 -1.5818 3.4447 25 16 1.7036 -0.2327 2.8390 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 4.7320 -3.5018 1.7233 34 1 4.5174 -3.4536 3.4896 35 1 3.3485 -4.9127 0.3815 36 1 1.9447 -5.7323 1.1060 37 1 1.9402 -3.9627 0.9129 38 1 4.3793 -5.7407 3.8100 39 1 4.5806 -6.2625 0.8093 40 1 5.6951 -5.2560 1.7649 41 1 6.2806 -7.2232 3.1556 42 1 6.6148 -7.5350 1.4351 43 1 5.4682 -9.4674 2.4834 44 1 6.8801 -9.6939 -0.7945 45 1 4.2469 -8.1998 4.2294 46 1 3.1324 -9.2066 3.2739 47 1 2.2120 -6.9276 3.6031 48 1 2.5466 -7.2386 1.8828 49 1 2.8364 -1.8212 4.4831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:29 Heat of formation + Delta-G solvation = 25.588003 kcal Electronic energy + Delta-G solvation = -25863.512467 eV Core-core repulsion = 22530.406329 eV Total energy + Delta-G solvation = -3333.106138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.17352 -38.64446 -36.10796 -35.07090 -32.17095 -30.55847 -29.65560 -28.46995 -27.53629 -27.01879 -25.50695 -24.71452 -23.46287 -21.60636 -20.92129 -19.99496 -19.54698 -18.47933 -17.51380 -15.93916 -15.86311 -15.56822 -15.01582 -14.64963 -14.50264 -14.29465 -14.10706 -13.64789 -13.38644 -13.25758 -13.12458 -12.89989 -12.63911 -12.51954 -12.02155 -11.82131 -11.70291 -11.54058 -11.46494 -11.37862 -11.28558 -11.18935 -10.96398 -10.88577 -10.81827 -10.53881 -10.20386 -9.94559 -9.75103 -9.64059 -9.41546 -9.19261 -8.89477 -8.74467 -8.63362 -8.23515 -7.71505 -5.96554 -3.95438 0.68672 1.31201 1.69439 2.75035 3.32196 3.40133 3.42649 3.83251 4.46067 4.48763 4.56750 4.75713 4.81596 5.09014 5.20799 5.24101 5.28452 5.36727 5.43762 5.47428 5.53216 5.60400 5.65966 5.76701 5.83758 5.87089 5.90818 5.99745 6.06251 6.12330 6.19713 6.35089 6.41738 6.47523 6.52951 6.57450 6.73094 6.75716 6.90496 7.11507 7.15350 7.34286 7.46230 7.55102 7.59480 7.77633 7.79680 7.97440 8.08594 8.53166 9.07311 9.66450 11.12977 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.003244 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.221185 B = 8630.031790 C = 9592.207585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.021 4.021 3 C -0.146 4.146 4 C 0.056 3.944 5 N -0.462 5.462 6 C 0.086 3.914 7 C 0.125 3.875 8 N -0.532 5.532 9 C 0.025 3.975 10 C 0.092 3.908 11 C -0.134 4.134 12 C -0.097 4.097 13 C 0.042 3.958 14 C -0.501 4.501 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.890 5.890 18 Si 0.877 3.123 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.106 4.106 23 C -0.097 4.097 24 C -0.243 4.243 25 S 0.098 5.902 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.017 0.983 42 H 0.070 0.930 43 H 0.031 0.969 44 H 0.258 0.742 45 H 0.033 0.967 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.071 0.929 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 21.044 4.703 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.043 4.043 3 C -0.204 4.204 4 C -0.223 4.223 5 N -0.176 5.176 6 C -0.046 4.046 7 C -0.006 4.006 8 N -0.255 5.255 9 C -0.124 4.124 10 C -0.016 4.016 11 C -0.172 4.172 12 C -0.136 4.136 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.073 0.927 16 C -0.137 4.137 17 N -0.529 5.529 18 Si 0.705 3.295 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.383 4.383 25 S 0.353 5.647 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.625 21.615 4.916 24.167 hybrid contribution 0.959 -0.873 -1.501 1.984 sum -8.666 20.742 3.415 22.738 Atomic orbital electron populations 1.21917 0.93209 1.02843 1.02512 1.19814 0.96081 0.95321 0.93088 1.21916 1.01783 0.94172 1.02550 1.27037 1.00091 0.96563 0.98594 1.66139 1.12834 1.09880 1.28784 1.20199 1.00063 0.98217 0.86088 1.20582 0.92271 0.85761 1.01963 1.62366 1.33050 1.01842 1.28229 1.22399 0.99212 1.01682 0.89067 1.21739 0.93293 0.88601 0.97942 1.22037 0.97038 0.97545 1.00612 1.21378 0.99128 0.95106 0.97944 1.18700 0.91834 0.93763 0.93363 1.21130 0.93758 1.46048 0.93022 0.92680 1.24921 0.95008 0.95162 0.98632 1.69962 1.06738 1.45752 1.30419 0.86816 0.79429 0.77628 0.85637 1.20829 1.21415 1.19889 1.21554 0.98732 0.96038 0.98055 1.21483 0.96863 0.93524 1.01639 1.26788 1.06536 1.00417 1.04510 1.83738 1.49345 1.29350 1.02313 0.91876 0.92278 0.91253 0.88121 0.92035 0.91244 0.92269 0.92711 0.89629 0.94765 0.91190 0.92143 0.91392 0.90592 0.95025 0.96381 0.91163 0.95134 0.93237 0.94833 0.93330 0.93808 0.91014 0.80675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.09 37.16 0.34 -0.76 16 2 C -0.02 -0.19 3.35 -91.77 -0.31 -0.49 16 3 C -0.15 -1.03 9.09 37.16 0.34 -0.69 16 4 C 0.06 0.65 6.03 -13.46 -0.08 0.57 16 5 N -0.46 -6.69 9.31 -8.05 -0.07 -6.77 16 6 C 0.09 1.21 5.57 -84.23 -0.47 0.74 16 7 C 0.12 1.88 4.84 -4.98 -0.02 1.85 16 8 N -0.53 -8.85 4.74 -236.33 -1.12 -9.97 16 9 C 0.02 0.43 8.50 60.07 0.51 0.94 16 10 C 0.09 1.66 2.22 -67.72 -0.15 1.51 16 11 C -0.13 -2.74 4.29 -26.73 -0.11 -2.86 16 12 C -0.10 -2.23 5.30 -26.73 -0.14 -2.37 16 13 C 0.04 1.02 2.45 -91.77 -0.22 0.80 16 14 C -0.50 -13.34 6.64 -34.44 -0.23 -13.57 16 15 H 0.06 1.47 6.53 -52.49 -0.34 1.12 16 16 C 0.06 1.76 5.20 -17.82 -0.09 1.66 16 17 N -0.89 -25.59 12.16 55.43 0.67 -24.92 16 18 Si 0.88 21.39 29.55 -169.99 -5.02 16.37 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.11 -2.18 5.42 -26.70 -0.14 -2.33 16 23 C -0.10 -1.86 4.78 -26.70 -0.13 -1.99 16 24 C -0.24 -2.89 11.11 29.12 0.32 -2.57 16 25 S 0.10 0.99 22.53 -107.50 -2.42 -1.43 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.41 7.94 -51.93 -0.41 -0.01 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 33 H 0.05 0.90 6.94 -51.93 -0.36 0.54 16 34 H 0.09 1.14 7.96 -51.93 -0.41 0.73 16 35 H 0.03 0.64 6.51 -51.93 -0.34 0.31 16 36 H 0.07 1.25 6.13 -51.93 -0.32 0.93 16 37 H 0.06 1.02 6.43 -51.93 -0.33 0.69 16 38 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 39 H 0.08 1.75 5.55 -51.93 -0.29 1.46 16 40 H 0.03 0.61 6.75 -51.93 -0.35 0.26 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 1.82 6.90 -51.93 -0.36 1.47 16 43 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.07 1.49 4.72 -51.93 -0.25 1.24 16 49 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -28.90 379.54 -11.22 -40.12 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.37 Total: 0.43 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -0.60 Total: -19.55 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.52 Total: -41.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.42 Total: -1.43 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.90 -11.22 -40.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.704 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds