Wall clock time and date at job start Sat Apr 11 2020 00:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47370 * 2 1 4 4 C 1.50700 * 109.46716 * 119.99868 * 2 1 3 5 5 N 1.29028 * 124.91993 * 120.00236 * 4 2 1 6 6 C 1.31775 * 117.12945 * 179.73307 * 5 4 2 7 7 C 1.50702 * 122.75054 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.46938 * 274.99539 * 7 6 5 9 9 C 1.46906 * 111.00052 * 66.04693 * 8 7 6 10 10 C 1.46902 * 111.00022 * 189.99710 * 8 7 6 11 11 C 1.52994 * 109.47223 * 295.00400 * 10 8 7 12 12 C 1.53004 * 109.47055 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47323 * 59.99582 * 12 11 10 14 14 C 1.50705 * 109.46868 * 60.00096 * 13 12 11 15 15 H 1.07993 * 120.00072 * 245.42811 * 14 13 12 16 16 C 1.37873 * 119.99760 * 65.42852 * 14 13 12 17 17 N 1.31511 * 120.00154 * 9.54218 * 16 14 13 18 18 Si 1.86807 * 119.99965 * 189.54654 * 16 14 13 19 19 H 1.48502 * 109.46916 * 94.98690 * 18 16 14 20 20 H 1.48494 * 109.46905 * 214.99082 * 18 16 14 21 21 H 1.48504 * 109.46790 * 334.99100 * 18 16 14 22 22 C 1.52998 * 109.47142 * 300.00455 * 13 12 11 23 23 C 1.52997 * 109.46936 * 174.99842 * 10 8 7 24 24 C 1.33641 * 114.50000 * 359.97438 * 6 5 4 25 25 S 1.70986 * 124.91519 * 299.69332 * 4 2 1 26 26 H 1.09001 * 109.46873 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47314 * 300.00497 * 1 2 3 28 28 H 1.08999 * 109.46950 * 60.00302 * 1 2 3 29 29 H 1.08995 * 109.47314 * 239.99503 * 2 1 3 30 30 H 1.08994 * 109.47477 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47147 * 300.00079 * 3 2 1 32 32 H 1.09005 * 109.46765 * 59.99393 * 3 2 1 33 33 H 1.08998 * 109.47471 * 34.99958 * 7 6 5 34 34 H 1.09003 * 109.46954 * 155.00115 * 7 6 5 35 35 H 1.08995 * 109.47003 * 59.99573 * 9 8 7 36 36 H 1.08991 * 109.47223 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.46596 * 300.00156 * 9 8 7 38 38 H 1.09003 * 109.46492 * 55.00710 * 10 8 7 39 39 H 1.08999 * 109.47000 * 299.99289 * 11 10 8 40 40 H 1.08996 * 109.46994 * 60.00000 * 11 10 8 41 41 H 1.09003 * 109.46585 * 300.00264 * 12 11 10 42 42 H 1.08990 * 109.47275 * 179.97438 * 12 11 10 43 43 H 1.09000 * 109.47054 * 180.02562 * 13 12 11 44 44 H 0.97007 * 119.99906 * 179.97438 * 17 16 14 45 45 H 1.08995 * 109.47110 * 299.99395 * 22 13 12 46 46 H 1.09005 * 109.47295 * 179.97438 * 22 13 12 47 47 H 1.09003 * 109.47756 * 300.00347 * 23 10 8 48 48 H 1.08999 * 109.47401 * 60.00641 * 23 10 8 49 49 H 1.07995 * 126.03797 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7772 -1.7639 1.2228 6 6 3.1326 -2.2571 2.3920 7 6 4.0000 -3.4816 2.5306 8 7 3.1616 -4.6859 2.4617 9 6 2.5598 -4.8329 1.1296 10 6 3.9294 -5.8836 2.8275 11 6 5.0305 -6.1195 1.7917 12 6 5.8307 -7.3666 2.1731 13 6 4.8982 -8.5790 2.2113 14 6 4.2761 -8.7772 0.8530 15 1 3.2113 -8.6522 0.7234 16 6 5.0664 -9.1182 -0.2240 17 7 6.3241 -9.4536 -0.0367 18 14 4.3506 -9.1037 -1.9495 19 1 4.6462 -7.8004 -2.5970 20 1 4.9565 -10.2009 -2.7458 21 1 2.8802 -9.2983 -1.8770 22 6 3.7971 -8.3431 3.2470 23 6 2.9965 -7.0957 2.8652 24 6 2.6616 -1.5818 3.4447 25 16 1.7036 -0.2327 2.8390 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 4.7320 -3.5018 1.7233 34 1 4.5174 -3.4536 3.4896 35 1 3.3485 -4.9127 0.3815 36 1 1.9447 -5.7323 1.1060 37 1 1.9402 -3.9627 0.9129 38 1 4.3793 -5.7407 3.8100 39 1 4.5806 -6.2625 0.8093 40 1 5.6951 -5.2560 1.7649 41 1 6.2806 -7.2232 3.1556 42 1 6.6148 -7.5350 1.4351 43 1 5.4682 -9.4674 2.4834 44 1 6.8801 -9.6939 -0.7945 45 1 4.2469 -8.1998 4.2294 46 1 3.1324 -9.2066 3.2739 47 1 2.2120 -6.9276 3.6031 48 1 2.5466 -7.2386 1.8828 49 1 2.8364 -1.8212 4.4831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:28 Heat of formation + Delta-G solvation = 10.027848 kcal Electronic energy + Delta-G solvation = -25864.187206 eV Core-core repulsion = 22530.406329 eV Total energy + Delta-G solvation = -3333.780877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20770 -40.11398 -37.23186 -36.26482 -34.12533 -31.69240 -31.36104 -30.05818 -28.23476 -28.09114 -26.99633 -26.21535 -24.76392 -23.24547 -21.90103 -21.39217 -20.59956 -20.22551 -18.42622 -17.76534 -17.11604 -16.74659 -16.64416 -16.10087 -15.48385 -15.34672 -15.31003 -15.09376 -15.01558 -14.53382 -14.39493 -14.00946 -13.76161 -13.52793 -13.28738 -13.12047 -13.03465 -12.90973 -12.80734 -12.73680 -12.60059 -12.43471 -12.41689 -12.20627 -12.16294 -12.08112 -11.86599 -11.60407 -11.50829 -11.02096 -10.68201 -10.55271 -10.52853 -10.34431 -10.29298 -9.66089 -9.14807 -8.09956 -6.13037 -0.19086 0.47604 0.80767 1.34582 1.37984 1.45546 1.76391 2.42514 2.98094 3.22170 3.22918 3.83289 3.96902 4.02170 4.07391 4.13935 4.16843 4.32710 4.39698 4.46810 4.53870 4.58186 4.68093 4.69941 4.73517 4.78035 4.80308 4.86557 4.89897 4.90442 4.91308 4.97860 5.01603 5.06361 5.11083 5.22932 5.27156 5.28868 5.30659 5.37888 5.52413 5.62810 5.62875 5.70354 5.91829 6.11001 6.13347 6.18855 6.45850 6.87698 6.97789 7.51309 8.99392 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.003244 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.221185 B = 8630.031790 C = 9592.207585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.024 4.024 3 C -0.141 4.141 4 C 0.043 3.957 5 N -0.502 5.502 6 C 0.060 3.940 7 C 0.127 3.873 8 N -0.523 5.523 9 C 0.036 3.964 10 C 0.101 3.899 11 C -0.122 4.122 12 C -0.091 4.091 13 C 0.037 3.963 14 C -0.502 4.502 15 H 0.052 0.948 16 C 0.016 3.984 17 N -0.921 5.921 18 Si 0.930 3.070 19 H -0.283 1.283 20 H -0.286 1.286 21 H -0.266 1.266 22 C -0.099 4.099 23 C -0.090 4.090 24 C -0.246 4.246 25 S 0.157 5.843 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.106 0.894 35 H 0.011 0.989 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.032 0.968 43 H -0.006 1.006 44 H 0.256 0.744 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 23.503 6.049 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 C -0.199 4.199 4 C -0.235 4.235 5 N -0.217 5.217 6 C -0.071 4.071 7 C -0.003 4.003 8 N -0.245 5.245 9 C -0.113 4.113 10 C -0.007 4.007 11 C -0.161 4.161 12 C -0.130 4.130 13 C 0.019 3.981 14 C -0.540 4.540 15 H 0.071 0.929 16 C -0.182 4.182 17 N -0.562 5.562 18 Si 0.757 3.243 19 H -0.209 1.209 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.137 4.137 23 C -0.128 4.128 24 C -0.386 4.386 25 S 0.412 5.588 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.124 0.876 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.012 0.988 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.487 24.089 6.264 27.413 hybrid contribution 1.514 -1.574 -1.888 2.887 sum -9.973 22.514 4.376 25.010 Atomic orbital electron populations 1.21905 0.91906 1.02321 1.03926 1.19955 0.97074 0.96030 0.91581 1.21900 1.01122 0.92969 1.03940 1.27519 0.99384 0.96093 1.00551 1.66117 1.14454 1.11482 1.29639 1.20065 1.01507 0.98661 0.86868 1.20596 0.92015 0.85533 1.02198 1.62384 1.32923 1.01910 1.27304 1.22251 0.98441 1.01473 0.89086 1.21630 0.92253 0.89027 0.97811 1.21889 0.97660 0.96601 0.99956 1.21236 0.98192 0.95685 0.97843 1.18695 0.92908 0.92906 0.93641 1.21408 0.93615 1.44808 0.94203 0.92946 1.25568 0.95363 0.95358 1.01879 1.70079 1.07854 1.47126 1.31094 0.85962 0.79118 0.77361 0.81864 1.20931 1.21233 1.19055 1.21451 0.97599 0.96916 0.97778 1.21391 0.97223 0.93081 1.01123 1.27100 1.05809 1.00570 1.05073 1.83489 1.47625 1.27480 1.00182 0.93330 0.91379 0.89341 0.89493 0.93059 0.89375 0.91363 0.94778 0.87622 0.97002 0.91878 0.91686 0.89385 0.93622 0.94019 0.94434 0.94906 0.98800 0.93463 0.92599 0.93523 0.91434 0.93090 0.78690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.09 71.98 0.65 -1.19 16 2 C -0.02 -0.40 3.35 -11.54 -0.04 -0.44 16 3 C -0.14 -1.70 9.09 71.98 0.65 -1.04 16 4 C 0.04 0.94 6.03 88.52 0.53 1.47 16 5 N -0.50 -14.26 9.31 -179.40 -1.67 -15.93 16 6 C 0.06 1.62 5.57 41.52 0.23 1.85 16 7 C 0.13 3.66 4.84 85.56 0.41 4.07 16 8 N -0.52 -16.71 4.74 -901.62 -4.27 -20.99 16 9 C 0.04 1.26 8.50 127.69 1.09 2.34 16 10 C 0.10 3.48 2.22 44.91 0.10 3.58 16 11 C -0.12 -5.03 4.29 30.59 0.13 -4.89 16 12 C -0.09 -4.23 5.30 30.60 0.16 -4.07 16 13 C 0.04 1.84 2.45 -11.54 -0.03 1.81 16 14 C -0.50 -27.30 6.64 25.60 0.17 -27.13 16 15 H 0.05 2.83 6.53 -2.91 -0.02 2.81 16 16 C 0.02 0.91 5.20 84.65 0.44 1.35 16 17 N -0.92 -54.78 12.16 21.45 0.26 -54.52 16 18 Si 0.93 44.90 29.55 68.60 2.03 46.93 16 19 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 C -0.10 -4.00 5.42 30.61 0.17 -3.83 16 23 C -0.09 -3.31 4.78 30.61 0.15 -3.16 16 24 C -0.25 -5.22 11.11 66.78 0.74 -4.48 16 25 S 0.16 2.75 22.53 -56.49 -1.27 1.48 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.75 7.94 -2.39 -0.02 0.73 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.73 8.14 -2.38 -0.02 0.72 16 32 H 0.07 0.69 7.92 -2.38 -0.02 0.67 16 33 H 0.03 1.12 6.94 -2.39 -0.02 1.10 16 34 H 0.11 2.57 7.96 -2.39 -0.02 2.55 16 35 H 0.01 0.45 6.51 -2.39 -0.02 0.43 16 36 H 0.06 2.26 6.13 -2.39 -0.01 2.25 16 37 H 0.06 2.21 6.43 -2.39 -0.02 2.19 16 38 H 0.09 2.77 8.03 -2.39 -0.02 2.75 16 39 H 0.05 2.16 5.55 -2.39 -0.01 2.14 16 40 H 0.04 1.61 6.75 -2.39 -0.02 1.59 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.03 1.75 6.90 -2.39 -0.02 1.74 16 43 H -0.01 -0.35 8.09 -2.39 -0.02 -0.37 16 44 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.05 2.09 4.72 -2.39 -0.01 2.08 16 49 H 0.20 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -64.05 379.54 1.55 -62.49 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.92 Total: 14.30 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 5.56 Total: -33.76 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -5.68 Total: -91.44 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.27 Total: 1.48 kcal Total: -64.05 1.55 -62.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.522 kcal (2) G-P(sol) polarization free energy of solvation -64.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds