Wall clock time and date at job start Sat Apr 11 2020 00:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37854 * 119.93994 * 2 1 4 4 C 1.39631 * 119.87993 * 179.97438 * 3 2 1 5 5 C 1.47721 * 120.12015 * 179.97438 * 4 3 2 6 6 O 1.21568 * 119.99900 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00551 * 179.97438 * 5 4 3 8 8 C 1.46494 * 120.00453 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47129 * 35.00139 * 8 7 5 10 10 C 1.52992 * 109.47275 * 274.99943 * 8 7 5 11 11 C 1.53003 * 109.47104 * 154.99951 * 8 7 5 12 12 C 1.53001 * 109.47382 * 294.99933 * 11 8 7 13 13 C 1.52996 * 109.47556 * 179.97438 * 12 11 8 14 14 C 1.53000 * 109.47348 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47056 * 180.02562 * 14 13 12 16 16 C 1.36936 * 119.99833 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99605 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00122 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47054 * 60.00135 * 20 18 16 22 22 H 1.48499 * 109.47044 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47157 * 300.00323 * 20 18 16 24 24 C 1.39677 * 119.76310 * 359.72837 * 4 3 2 25 25 C 1.37810 * 119.87743 * 0.54821 * 24 4 3 26 26 C 1.38627 * 119.93997 * 179.97438 * 2 1 3 27 27 F 1.35098 * 119.88279 * 0.03840 * 26 2 1 28 28 H 1.08998 * 109.47147 * 270.02191 * 1 2 3 29 29 H 1.08997 * 109.47013 * 30.02437 * 1 2 3 30 30 H 1.09000 * 109.47157 * 150.02055 * 1 2 3 31 31 H 1.08005 * 120.06527 * 359.95249 * 3 2 1 32 32 H 0.97007 * 119.99158 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47744 * 180.02562 * 10 8 7 34 34 H 1.09002 * 109.47202 * 300.00152 * 10 8 7 35 35 H 1.08999 * 109.47001 * 59.99605 * 10 8 7 36 36 H 1.08999 * 109.47255 * 54.99495 * 11 8 7 37 37 H 1.09004 * 109.47208 * 174.99874 * 11 8 7 38 38 H 1.09004 * 109.47122 * 300.00423 * 12 11 8 39 39 H 1.09004 * 109.46997 * 59.99811 * 12 11 8 40 40 H 1.08996 * 109.47260 * 300.00661 * 13 12 11 41 41 H 1.09009 * 109.46544 * 60.00234 * 13 12 11 42 42 H 1.08991 * 109.47296 * 300.00794 * 14 13 12 43 43 H 1.09004 * 109.46837 * 60.00245 * 14 13 12 44 44 H 0.96997 * 119.99903 * 0.02562 * 15 14 13 45 45 H 0.97001 * 119.99751 * 180.02562 * 19 18 16 46 46 H 1.07998 * 120.05924 * 180.27440 * 24 4 3 47 47 H 1.08002 * 119.94272 * 179.73282 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1946 0.0000 4 6 3.5913 1.1931 0.0005 5 6 4.3340 2.4701 0.0000 6 8 3.7294 3.5248 -0.0005 7 7 5.6817 2.4660 0.0010 8 6 6.4182 3.7324 0.0010 9 1 5.8726 4.4699 0.5897 10 6 6.5670 4.2358 -1.4360 11 6 7.8042 3.5163 0.6118 12 6 7.6580 3.1332 2.0859 13 6 9.0439 2.9165 2.6965 14 6 8.8977 2.5340 4.1707 15 7 10.2248 2.3271 4.7556 16 6 10.3450 1.9746 6.0733 17 1 9.4613 1.8488 6.6814 18 6 11.6025 1.7791 6.6276 19 7 12.6794 1.9330 5.8867 20 14 11.7663 1.2976 8.4251 21 1 11.0673 0.0083 8.6578 22 1 13.2034 1.1501 8.7690 23 1 11.1585 2.3511 9.2771 24 6 4.2835 -0.0201 0.0068 25 6 3.5857 -1.2085 0.0010 26 6 2.1989 -1.2013 0.0005 27 9 1.5198 -2.3692 0.0003 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6551 2.1300 -0.0008 32 1 6.1641 1.6243 0.0018 33 1 7.1153 5.1778 -1.4361 34 1 7.1125 3.4982 -2.0247 35 1 5.5796 4.3896 -1.8712 36 1 8.3160 2.7158 0.0775 37 1 8.3842 4.4357 0.5312 38 1 7.1461 3.9335 2.6203 39 1 7.0780 2.2137 2.1665 40 1 9.5554 2.1160 2.1621 41 1 9.6242 3.8358 2.6159 42 1 8.3864 3.3347 4.7048 43 1 8.3172 1.6149 4.2517 44 1 11.0184 2.4398 4.2093 45 1 13.5581 1.7960 6.2740 46 1 5.3634 -0.0268 0.0118 47 1 4.1198 -2.1472 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174979365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:38 Heat of formation + Delta-G solvation = -93.259592 kcal Electronic energy + Delta-G solvation = -25959.384690 eV Core-core repulsion = 22054.911757 eV Total energy + Delta-G solvation = -3904.472932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.04253 -41.37485 -39.54726 -37.98550 -36.82603 -34.87758 -34.14139 -32.94344 -32.11595 -31.13051 -28.80948 -27.98752 -25.99326 -25.12699 -23.60541 -23.32477 -22.05416 -21.83530 -21.34003 -19.13097 -18.82143 -18.46174 -17.76699 -17.02539 -16.82157 -16.68640 -16.26043 -16.06126 -15.70384 -15.40130 -15.27347 -15.08927 -14.65404 -14.48677 -14.38253 -14.25426 -14.14733 -14.03161 -13.78650 -13.26812 -13.03752 -12.94986 -12.87655 -12.85593 -12.83390 -12.44011 -12.27078 -12.19871 -12.07428 -11.87551 -11.79973 -11.48473 -11.38942 -11.05621 -10.93001 -10.19095 -10.04149 -9.71226 -9.01436 -7.96583 -5.25767 -0.41231 0.12820 1.46459 1.49798 1.56109 1.67371 2.11608 2.55325 2.64473 3.09499 3.36505 3.55225 3.58324 3.67314 3.73670 4.03816 4.05467 4.07944 4.13193 4.15274 4.36631 4.42855 4.51629 4.61872 4.66401 4.68550 4.69474 4.78597 4.83659 4.88872 4.94182 5.00044 5.01691 5.03255 5.09799 5.11541 5.13486 5.22057 5.28613 5.33992 5.44429 5.45941 5.54216 5.57659 5.72260 6.26382 6.50662 7.16815 7.32047 8.09001 8.32372 9.26775 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.002232 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.235149 B =12539.467069 C =14268.369834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.132 4.132 3 C -0.044 4.044 4 C -0.154 4.154 5 C 0.559 3.441 6 O -0.577 6.577 7 N -0.706 5.706 8 C 0.143 3.857 9 H 0.070 0.930 10 C -0.158 4.158 11 C -0.117 4.117 12 C -0.106 4.106 13 C -0.112 4.112 14 C 0.147 3.853 15 N -0.749 5.749 16 C -0.251 4.251 17 H 0.073 0.927 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 0.975 3.025 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.278 1.278 24 C -0.056 4.056 25 C -0.154 4.154 26 C 0.108 3.892 27 F -0.138 7.138 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.412 0.588 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.011 0.989 43 H 0.018 0.982 44 H 0.374 0.626 45 H 0.252 0.748 46 H 0.164 0.836 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.758 -3.818 -19.736 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.133 4.133 3 C -0.063 4.063 4 C -0.157 4.157 5 C 0.348 3.652 6 O -0.458 6.458 7 N -0.358 5.358 8 C 0.039 3.961 9 H 0.088 0.912 10 C -0.216 4.216 11 C -0.154 4.154 12 C -0.144 4.144 13 C -0.150 4.150 14 C 0.021 3.979 15 N -0.392 5.392 16 C -0.383 4.383 17 H 0.091 0.909 18 C -0.269 4.269 19 N -0.619 5.619 20 Si 0.804 3.196 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.204 1.204 24 C -0.074 4.074 25 C -0.172 4.172 26 C 0.088 3.912 27 F -0.116 7.116 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.250 0.750 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.206 0.794 45 H 0.061 0.939 46 H 0.181 0.819 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -22.248 -3.143 -19.572 29.798 hybrid contribution 0.659 -0.692 0.977 1.367 sum -21.589 -3.835 -18.595 28.749 Atomic orbital electron populations 1.20812 0.88366 1.04278 1.03759 1.20100 0.98518 0.91194 1.03441 1.21089 0.92793 0.98013 0.94382 1.20026 0.94477 0.93243 1.07980 1.18373 0.82724 0.88573 0.75559 1.90759 1.69299 1.33878 1.51911 1.45971 1.05373 1.10646 1.73798 1.21015 0.92365 0.85396 0.97303 0.91198 1.22120 1.01701 1.02394 0.95363 1.21856 0.95017 1.03987 0.94586 1.21440 0.95543 1.01738 0.95711 1.21598 0.98150 1.01326 0.93918 1.20864 0.86654 0.96780 0.93587 1.42624 1.03737 1.83688 1.09129 1.19613 0.92520 1.37780 0.88354 0.90948 1.25611 0.95183 1.03511 1.02581 1.69807 0.97333 1.57736 1.37071 0.85186 0.76300 0.78349 0.79785 1.20266 1.21861 1.20448 1.21416 1.01482 0.89860 0.94669 1.21370 0.91768 1.00963 1.03127 1.18037 0.90702 0.80950 1.01500 1.91495 1.80329 1.46261 1.93542 0.89920 0.89611 0.90666 0.84098 0.74958 0.90422 0.91016 0.93829 0.89524 0.89398 0.92688 0.91514 0.91687 0.92450 0.97060 0.96394 0.79382 0.93880 0.81890 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.83 71.24 0.70 -0.64 16 2 C -0.13 -2.07 5.88 -19.86 -0.12 -2.18 16 3 C -0.04 -0.77 9.24 22.52 0.21 -0.57 16 4 C -0.15 -2.71 5.87 -20.09 -0.12 -2.82 16 5 C 0.56 11.83 7.73 86.75 0.67 12.50 16 6 O -0.58 -16.62 16.01 -3.93 -0.06 -16.69 16 7 N -0.71 -11.32 4.48 -445.54 -2.00 -13.31 16 8 C 0.14 2.45 2.57 44.99 0.12 2.56 16 9 H 0.07 1.53 7.58 -2.39 -0.02 1.51 16 10 C -0.16 -2.37 9.48 71.98 0.68 -1.68 16 11 C -0.12 -1.87 4.75 30.60 0.15 -1.72 16 12 C -0.11 -2.33 5.10 30.59 0.16 -2.17 16 13 C -0.11 -3.32 5.33 30.59 0.16 -3.16 16 14 C 0.15 5.93 6.26 86.38 0.54 6.47 16 15 N -0.75 -38.97 5.60 -343.45 -1.92 -40.89 16 16 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 17 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 19 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 20 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 C -0.06 -0.70 9.54 22.52 0.21 -0.49 16 25 C -0.15 -1.97 10.01 22.28 0.22 -1.75 16 26 C 0.11 1.71 7.25 22.47 0.16 1.87 16 27 F -0.14 -2.34 16.46 44.97 0.74 -1.60 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.07 0.81 7.63 -2.39 -0.02 0.79 16 31 H 0.14 2.55 7.65 -2.91 -0.02 2.52 16 32 H 0.41 4.40 6.63 -92.70 -0.61 3.78 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.07 1.38 7.75 -2.38 -0.02 1.36 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.37 20.42 7.67 -92.71 -0.71 19.71 16 45 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.16 1.10 6.40 -2.91 -0.02 1.08 16 47 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -72.60 393.97 3.77 -68.83 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.35 Total: 25.88 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 5.05 Total: -11.29 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -3.64 Total: -113.60 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.06 Total: -16.69 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.74 Total: -1.60 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.60 3.77 -68.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174979365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.432 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds