Wall clock time and date at job start Sat Apr 11 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38465 * 119.82549 * 2 1 4 4 C 1.37862 * 120.21339 * 179.74048 * 3 2 1 5 5 C 1.39659 * 119.87549 * 0.57667 * 4 3 2 6 6 C 1.47698 * 120.16404 * 179.69942 * 5 4 3 7 7 O 1.21568 * 120.00282 * 179.73021 * 6 5 4 8 8 N 1.34779 * 119.99848 * 359.72265 * 6 5 4 9 9 C 1.46496 * 119.99965 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47464 * 325.00834 * 9 8 6 11 11 C 1.53006 * 109.46995 * 85.00573 * 9 8 6 12 12 C 1.52999 * 109.47487 * 205.00106 * 9 8 6 13 13 C 1.53003 * 109.47015 * 64.99979 * 12 9 8 14 14 C 1.52993 * 109.47495 * 180.02562 * 13 12 9 15 15 C 1.53003 * 109.47495 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47011 * 180.02562 * 15 14 13 17 17 C 1.36937 * 119.99663 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00303 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00019 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00073 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00133 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47109 * 89.99442 * 21 19 17 23 23 H 1.48497 * 109.47245 * 209.99684 * 21 19 17 24 24 H 1.48501 * 109.46822 * 329.99944 * 21 19 17 25 25 C 1.39820 * 119.67011 * 359.42625 * 5 4 3 26 26 F 1.35100 * 120.10925 * 180.29594 * 25 5 4 27 27 C 1.38204 * 119.83309 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47215 * 269.97393 * 1 2 3 29 29 H 1.08993 * 109.47209 * 29.98419 * 1 2 3 30 30 H 1.09000 * 109.46711 * 149.97970 * 1 2 3 31 31 H 1.07990 * 119.89297 * 0.04108 * 3 2 1 32 32 H 1.08000 * 120.06102 * 180.28192 * 4 3 2 33 33 H 0.97003 * 120.00044 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47002 * 299.99701 * 11 9 8 35 35 H 1.08993 * 109.46955 * 60.00138 * 11 9 8 36 36 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 37 37 H 1.08994 * 109.47465 * 185.00255 * 12 9 8 38 38 H 1.08998 * 109.47565 * 305.00687 * 12 9 8 39 39 H 1.08999 * 109.47145 * 300.00897 * 13 12 9 40 40 H 1.09000 * 109.46883 * 59.99966 * 13 12 9 41 41 H 1.08999 * 109.47626 * 300.00565 * 14 13 12 42 42 H 1.09000 * 109.47115 * 60.00069 * 14 13 12 43 43 H 1.08994 * 109.47229 * 300.00382 * 15 14 13 44 44 H 1.09006 * 109.46261 * 60.00210 * 15 14 13 45 45 H 0.96997 * 120.00348 * 0.02562 * 16 15 14 46 46 H 0.96997 * 120.00358 * 180.02562 * 20 19 17 47 47 H 1.08001 * 119.93954 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2012 0.0000 4 6 3.5743 1.2106 0.0054 5 6 4.2782 0.0044 -0.0013 6 6 5.7552 0.0070 -0.0023 7 8 6.3649 -1.0447 -0.0032 8 7 6.4270 1.1754 -0.0023 9 6 7.8919 1.1780 -0.0027 10 1 8.2570 0.3367 0.5864 11 6 8.4017 1.0535 -1.4400 12 6 8.3998 2.4862 0.6069 13 6 7.9954 2.5527 2.0810 14 6 8.5027 3.8611 2.6905 15 6 8.0987 3.9273 4.1648 16 7 8.5840 5.1804 4.7482 17 6 8.3403 5.4616 6.0661 18 1 7.7900 4.7598 6.6752 19 6 8.7996 6.6492 6.6188 20 7 9.4698 7.5048 5.8764 21 14 8.4666 7.0332 8.4164 22 1 9.5769 6.5053 9.2492 23 1 8.3672 8.5036 8.5983 24 1 7.1909 6.3957 8.8305 25 6 3.5777 -1.2057 -0.0013 26 9 4.2497 -2.3778 -0.0017 27 6 2.1946 -1.1989 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6512 2.1338 0.0007 32 1 4.1089 2.1490 0.0100 33 1 5.9404 2.0146 -0.0014 34 1 8.0400 0.1215 -1.8744 35 1 8.0367 1.8948 -2.0291 36 1 9.4917 1.0559 -1.4403 37 1 9.4860 2.5272 0.5259 38 1 7.9635 3.3298 0.0721 39 1 6.9092 2.5116 2.1619 40 1 8.4316 1.7091 2.6158 41 1 9.5888 3.9026 2.6096 42 1 8.0660 4.7044 2.1556 43 1 7.0126 3.8856 4.2462 44 1 8.5358 3.0839 4.6994 45 1 9.0779 5.8109 4.2011 46 1 9.7911 8.3344 6.2627 47 1 1.6509 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175426140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:57 Heat of formation + Delta-G solvation = -71.760336 kcal Electronic energy + Delta-G solvation = -26187.275063 eV Core-core repulsion = 22283.734408 eV Total energy + Delta-G solvation = -3903.540655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.10692 -40.45516 -39.02221 -36.94879 -35.26109 -33.69754 -33.05954 -31.48440 -30.97972 -30.24667 -27.90669 -27.44558 -24.31251 -23.32935 -23.24368 -22.06636 -21.07709 -20.73708 -20.59644 -18.32646 -17.15669 -17.04538 -16.93522 -16.16377 -16.00795 -15.39634 -15.05585 -14.86497 -14.72171 -14.63337 -14.09564 -13.93328 -13.83018 -13.71129 -13.52081 -13.15144 -12.94489 -12.92609 -12.67367 -12.35201 -12.30534 -12.11758 -11.78129 -11.74887 -11.45488 -11.26479 -10.98982 -10.80815 -10.70464 -10.41870 -10.30451 -10.09035 -9.98148 -9.66104 -9.47197 -9.27831 -9.04413 -8.84991 -6.89497 -5.74738 -3.03052 0.28988 0.73156 2.49923 2.87083 3.32055 3.44661 3.49495 3.51339 3.76893 4.14637 4.20405 4.39263 4.53559 4.64540 4.68751 4.73105 4.89390 4.95003 4.98980 5.08635 5.14680 5.26149 5.40060 5.45273 5.47248 5.52531 5.55830 5.59273 5.62335 5.67729 5.70099 5.78814 5.90504 5.93916 5.96274 6.10763 6.21679 6.31058 6.34440 6.38466 6.39394 6.47474 6.90625 6.94464 7.25860 7.71804 7.99014 8.44758 9.55438 10.14749 10.49374 11.48419 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.002302 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.613929 B =12159.511102 C =13692.481920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.031 4.031 3 C -0.140 4.140 4 C -0.052 4.052 5 C -0.180 4.180 6 C 0.559 3.441 7 O -0.527 6.527 8 N -0.716 5.716 9 C 0.141 3.859 10 H 0.090 0.910 11 C -0.163 4.163 12 C -0.127 4.127 13 C -0.115 4.115 14 C -0.125 4.125 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.164 3.836 26 F -0.115 7.115 27 C -0.169 4.169 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.399 0.601 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.010 -15.302 -19.345 29.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.032 4.032 3 C -0.158 4.158 4 C -0.070 4.070 5 C -0.184 4.184 6 C 0.345 3.655 7 O -0.404 6.404 8 N -0.369 5.369 9 C 0.037 3.963 10 H 0.108 0.892 11 C -0.221 4.221 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.143 3.857 26 F -0.093 7.093 27 C -0.188 4.188 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.235 0.765 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.065 0.935 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.571 -16.116 -19.172 29.491 hybrid contribution -0.074 0.749 0.880 1.158 sum -15.645 -15.367 -18.292 28.557 Atomic orbital electron populations 1.20911 0.90011 1.03557 1.03242 1.19984 0.96756 0.92117 0.94316 1.21077 0.93807 0.98232 1.02685 1.21236 0.94461 0.96544 0.94785 1.20076 0.94043 0.93365 1.10926 1.17981 0.86452 0.84265 0.76754 1.90836 1.69440 1.31012 1.49088 1.45988 1.07599 1.08112 1.75161 1.21084 0.78636 0.99685 0.96872 0.89156 1.22178 1.01530 1.02182 0.96243 1.21945 1.02099 0.95856 0.96569 1.21529 1.00975 0.98576 0.94215 1.21724 1.01061 0.96460 0.97071 1.20649 0.96228 0.89907 0.90752 1.42390 1.66920 1.18867 1.09720 1.19256 1.28953 1.01751 0.86978 0.91242 1.24751 1.01096 0.97182 0.98174 1.69658 1.42648 1.10925 1.35173 0.86178 0.77806 0.77189 0.84981 1.21714 1.21756 1.20766 1.17681 0.89679 0.80861 0.97463 1.91602 1.80403 1.44620 1.92663 1.21035 0.91761 0.99788 1.06211 0.90142 0.90684 0.90933 0.84508 0.84475 0.76528 0.92242 0.92460 0.91387 0.90046 0.91314 0.92183 0.91917 0.92026 0.92129 0.96646 0.96565 0.78352 0.93547 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.00 36.01 0.36 -0.10 16 2 C -0.03 -0.20 5.88 -104.55 -0.62 -0.82 16 3 C -0.14 -0.89 9.68 -39.64 -0.38 -1.27 16 4 C -0.05 -0.39 9.54 -39.19 -0.37 -0.76 16 5 C -0.18 -1.89 5.88 -104.91 -0.62 -2.50 16 6 C 0.56 6.91 7.73 -12.40 -0.10 6.82 16 7 O -0.53 -8.51 15.00 5.31 0.08 -8.43 16 8 N -0.72 -6.99 4.48 -54.80 -0.25 -7.23 16 9 C 0.14 1.42 2.57 -67.93 -0.17 1.25 16 10 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 11 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 12 C -0.13 -1.24 4.75 -26.73 -0.13 -1.36 16 13 C -0.11 -1.42 5.10 -26.73 -0.14 -1.56 16 14 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 15 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 16 N -0.74 -19.24 5.60 -59.91 -0.34 -19.58 16 17 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 20 N -0.94 -28.73 13.06 55.49 0.72 -28.00 16 21 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.16 1.79 7.29 -38.96 -0.28 1.51 16 26 F -0.11 -1.54 15.55 2.25 0.04 -1.50 16 27 C -0.17 -1.35 9.66 -39.56 -0.38 -1.73 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 30 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 31 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.14 0.71 6.41 -52.49 -0.34 0.37 16 33 H 0.40 2.93 6.64 -40.82 -0.27 2.66 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 393.24 15.07 5.93 5.93 Total: -1.00 -35.09 393.24 -9.33 -44.42 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.60 Total: 4.96 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.89 Total: -8.26 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.14 Total: -54.81 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.09 -9.33 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175426140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.342 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds