Wall clock time and date at job start Sat Apr 11 2020 00:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37905 * 120.06476 * 2 1 4 4 C 1.38407 * 120.22183 * 180.29416 * 3 2 1 5 5 C 1.38245 * 120.33994 * 359.44514 * 4 3 2 6 6 C 1.38287 * 120.11699 * 0.29939 * 5 4 3 7 7 F 1.35096 * 120.10873 * 179.97438 * 6 5 4 8 8 C 1.39624 * 120.06017 * 179.76389 * 2 1 3 9 9 C 1.47689 * 120.17179 * 359.95908 * 8 2 1 10 10 O 1.21568 * 120.00109 * 270.02739 * 9 8 2 11 11 N 1.34780 * 119.99619 * 90.01872 * 9 8 2 12 12 C 1.46499 * 119.99871 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46779 * 325.00672 * 12 11 9 14 14 C 1.53001 * 109.46867 * 85.00189 * 12 11 9 15 15 C 1.53000 * 109.47335 * 205.00196 * 12 11 9 16 16 C 1.52997 * 109.46772 * 64.99841 * 15 12 11 17 17 C 1.53000 * 109.46772 * 180.02562 * 16 15 12 18 18 C 1.53007 * 109.47138 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47157 * 180.02562 * 18 17 16 20 20 C 1.36933 * 120.00113 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00111 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00391 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99405 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00173 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46987 * 89.99991 * 24 22 20 26 26 H 1.48496 * 109.47060 * 209.99344 * 24 22 20 27 27 H 1.48499 * 109.47116 * 329.99943 * 24 22 20 28 28 H 1.08999 * 109.47369 * 270.23536 * 1 2 3 29 29 H 1.08997 * 109.47086 * 30.23536 * 1 2 3 30 30 H 1.09007 * 109.46764 * 150.23366 * 1 2 3 31 31 H 1.07998 * 119.88405 * 0.03905 * 3 2 1 32 32 H 1.08002 * 119.83330 * 179.72614 * 4 3 2 33 33 H 1.07998 * 119.94566 * 180.28063 * 5 4 3 34 34 H 0.97001 * 119.99880 * 0.02562 * 11 9 8 35 35 H 1.09007 * 109.47360 * 299.99604 * 14 12 11 36 36 H 1.08993 * 109.47210 * 60.00341 * 14 12 11 37 37 H 1.09004 * 109.47051 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47205 * 185.00272 * 15 12 11 39 39 H 1.09001 * 109.46893 * 305.00557 * 15 12 11 40 40 H 1.08998 * 109.47607 * 300.00185 * 16 15 12 41 41 H 1.09001 * 109.47493 * 60.00328 * 16 15 12 42 42 H 1.08997 * 109.47446 * 299.99938 * 17 16 15 43 43 H 1.09004 * 109.47487 * 60.00288 * 17 16 15 44 44 H 1.08997 * 109.46971 * 300.00313 * 18 17 16 45 45 H 1.08997 * 109.46791 * 60.00152 * 18 17 16 46 46 H 0.97004 * 119.99941 * 359.97438 * 19 18 17 47 47 H 0.97000 * 119.99680 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1935 0.0000 4 6 3.5819 1.1973 -0.0061 5 6 4.2835 0.0062 -0.0008 6 6 3.6050 -1.1988 0.0045 7 9 4.2908 -2.3627 0.0093 8 6 2.2064 -1.2084 0.0050 9 6 1.4731 -2.4904 0.0112 10 8 1.1715 -3.0131 1.0665 11 7 1.1382 -3.0807 -1.1533 12 6 0.4103 -4.3521 -1.1472 13 1 0.7414 -4.9562 -0.3025 14 6 -1.0902 -4.0801 -1.0226 15 6 0.6859 -5.1038 -2.4510 16 6 2.1661 -5.4851 -2.5167 17 6 2.4418 -6.2362 -3.8208 18 6 3.9222 -6.6170 -3.8869 19 7 4.1863 -7.3357 -5.1359 20 6 5.4510 -7.7794 -5.4163 21 1 6.2540 -7.5992 -4.7168 22 6 5.7014 -8.4600 -6.6000 23 7 4.7230 -8.6791 -7.4526 24 14 7.4269 -9.0646 -6.9827 25 1 7.6003 -10.4385 -6.4464 26 1 7.6319 -9.0779 -8.4534 27 1 8.4202 -8.1582 -6.3526 28 1 -0.3634 0.0042 1.0276 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6570 2.1283 0.0006 32 1 4.1166 2.1357 -0.0106 33 1 5.3634 0.0166 -0.0010 34 1 1.3790 -2.6638 -1.9953 35 1 -1.2865 -3.5446 -0.0937 36 1 -1.4212 -3.4760 -1.8672 37 1 -1.6317 -5.0261 -1.0176 38 1 0.0761 -6.0067 -2.4857 39 1 0.4374 -4.4647 -3.2983 40 1 2.7758 -4.5823 -2.4820 41 1 2.4147 -6.1242 -1.6694 42 1 1.8321 -7.1391 -3.8560 43 1 2.1933 -5.5969 -4.6680 44 1 4.5315 -5.7140 -3.8520 45 1 4.1711 -7.2563 -3.0399 46 1 3.4650 -7.4979 -5.7640 47 1 4.8978 -9.1550 -8.2795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176839008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:19 Heat of formation + Delta-G solvation = -72.413344 kcal Electronic energy + Delta-G solvation = -26684.543465 eV Core-core repulsion = 22780.974493 eV Total energy + Delta-G solvation = -3903.568971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.22282 -40.56866 -38.92553 -36.93277 -35.23947 -33.45599 -33.11827 -31.91330 -30.87780 -30.09914 -27.65788 -27.43493 -24.68609 -23.98068 -22.34087 -22.08745 -21.08843 -20.74483 -20.61365 -18.20537 -17.35024 -17.04723 -16.97368 -16.67918 -15.87337 -15.56766 -15.02970 -14.87140 -14.67003 -14.27185 -14.10697 -13.99682 -13.88156 -13.69903 -13.44513 -13.14687 -12.94702 -12.87828 -12.66981 -12.45233 -12.23441 -12.20304 -11.76999 -11.73308 -11.45786 -11.25632 -10.99098 -10.79143 -10.68664 -10.40525 -10.28552 -10.17571 -9.96445 -9.64148 -9.38448 -9.28319 -9.10663 -8.82867 -6.87243 -5.72792 -3.00896 0.52539 0.70773 2.27267 2.83293 3.08382 3.46199 3.50937 3.52966 3.74133 4.19961 4.28313 4.39680 4.54884 4.66961 4.69361 4.75572 4.88878 4.98358 5.02172 5.14829 5.17285 5.25312 5.39116 5.44055 5.46682 5.54438 5.57377 5.62583 5.67552 5.70088 5.78691 5.80227 5.88625 5.91858 5.95786 6.10993 6.21312 6.33963 6.35400 6.37492 6.41730 6.50572 6.93741 6.97483 7.21397 7.73981 7.91055 8.46844 9.57453 10.16890 10.51658 11.50480 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.002472 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.348511 B =11322.803811 C =12677.765756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.023 4.023 3 C -0.135 4.135 4 C -0.071 4.071 5 C -0.161 4.161 6 C 0.139 3.861 7 F -0.126 7.126 8 C -0.165 4.165 9 C 0.570 3.430 10 O -0.527 6.527 11 N -0.711 5.711 12 C 0.139 3.861 13 H 0.090 0.910 14 C -0.163 4.163 15 C -0.126 4.126 16 C -0.115 4.115 17 C -0.125 4.125 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.403 0.597 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 23.113 16.128 30.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.024 4.024 3 C -0.153 4.153 4 C -0.089 4.089 5 C -0.180 4.180 6 C 0.119 3.881 7 F -0.104 7.104 8 C -0.169 4.169 9 C 0.354 3.646 10 O -0.403 6.403 11 N -0.363 5.363 12 C 0.035 3.965 13 H 0.108 0.892 14 C -0.221 4.221 15 C -0.164 4.164 16 C -0.153 4.153 17 C -0.163 4.163 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.585 5.585 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.237 0.763 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.641 22.622 16.897 30.541 hybrid contribution 1.126 -0.445 -0.904 1.511 sum -10.515 22.176 15.993 29.294 Atomic orbital electron populations 1.20922 0.89991 1.03556 1.03454 1.19774 0.96431 0.90823 0.95326 1.21045 0.94251 0.97586 1.02433 1.21158 0.94070 0.97753 0.95899 1.21152 1.01394 0.90822 1.04612 1.17671 0.88293 0.82159 1.00019 1.91585 1.79257 1.46317 1.93274 1.19859 0.92299 0.94819 1.09927 1.17962 0.78557 0.83710 0.84348 1.90815 1.54165 1.64324 1.30967 1.46150 1.57842 1.24030 1.08251 1.21125 0.91396 0.84143 0.99846 0.89176 1.22181 0.95359 1.02480 1.02098 1.21938 0.98105 1.00520 0.95849 1.21528 0.94772 1.00436 0.98595 1.21720 0.98193 0.99864 0.96492 1.20649 0.92417 0.94539 0.89929 1.42391 1.09093 1.67040 1.19365 1.19264 0.86971 1.28610 1.02011 0.91235 1.24747 0.97608 1.01658 0.97218 1.69665 1.30626 1.46936 1.11245 0.86176 0.84080 0.78722 0.77175 1.21721 1.21764 1.20762 0.90049 0.90394 0.91077 0.84685 0.84466 0.83974 0.76253 0.92278 0.92371 0.91306 0.90041 0.91276 0.92136 0.91929 0.92040 0.92150 0.96609 0.96552 0.78365 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.62 36.00 0.35 -0.44 16 2 C -0.02 -0.18 5.91 -104.23 -0.62 -0.80 16 3 C -0.14 -0.84 9.68 -39.64 -0.38 -1.22 16 4 C -0.07 -0.43 10.03 -39.52 -0.40 -0.83 16 5 C -0.16 -1.31 10.01 -39.56 -0.40 -1.71 16 6 C 0.14 1.52 7.29 -38.95 -0.28 1.24 16 7 F -0.13 -1.68 16.83 2.25 0.04 -1.64 16 8 C -0.16 -1.76 5.64 -104.91 -0.59 -2.35 16 9 C 0.57 6.98 5.33 -12.40 -0.07 6.92 16 10 O -0.53 -8.33 16.77 5.31 0.09 -8.24 16 11 N -0.71 -7.19 4.53 -54.80 -0.25 -7.44 16 12 C 0.14 1.40 2.57 -67.93 -0.17 1.22 16 13 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 14 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 15 C -0.13 -1.27 4.75 -26.73 -0.13 -1.40 16 16 C -0.12 -1.50 5.10 -26.73 -0.14 -1.64 16 17 C -0.12 -2.05 5.33 -26.73 -0.14 -2.19 16 18 C 0.15 3.24 6.26 -4.04 -0.03 3.21 16 19 N -0.73 -19.57 5.60 -59.91 -0.34 -19.91 16 20 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 21 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 22 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 23 N -0.94 -29.04 13.06 55.49 0.72 -28.32 16 24 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.07 0.50 7.08 -51.93 -0.37 0.14 16 31 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.40 3.41 8.59 -40.82 -0.35 3.06 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.80 7.75 -51.93 -0.40 0.39 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.59 7.67 -40.82 -0.31 10.27 16 47 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -35.06 396.80 -9.38 -44.44 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.71 Total: 5.87 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.89 Total: -8.70 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.14 Total: -55.66 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.06 -9.38 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176839008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.977 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds