Wall clock time and date at job start Sat Apr 11 2020 00:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37905 * 120.06476 * 2 1 4 4 C 1.38407 * 120.22183 * 180.29416 * 3 2 1 5 5 C 1.38245 * 120.33994 * 359.44514 * 4 3 2 6 6 C 1.38287 * 120.11699 * 0.29939 * 5 4 3 7 7 F 1.35096 * 120.10873 * 179.97438 * 6 5 4 8 8 C 1.39624 * 120.06017 * 179.76389 * 2 1 3 9 9 C 1.47689 * 120.17179 * 359.95908 * 8 2 1 10 10 O 1.21568 * 120.00109 * 270.02739 * 9 8 2 11 11 N 1.34780 * 119.99619 * 90.01872 * 9 8 2 12 12 C 1.46499 * 119.99871 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46779 * 325.00672 * 12 11 9 14 14 C 1.53001 * 109.46867 * 85.00189 * 12 11 9 15 15 C 1.53000 * 109.47335 * 205.00196 * 12 11 9 16 16 C 1.52997 * 109.46772 * 64.99841 * 15 12 11 17 17 C 1.53000 * 109.46772 * 180.02562 * 16 15 12 18 18 C 1.53007 * 109.47138 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47157 * 180.02562 * 18 17 16 20 20 C 1.36933 * 120.00113 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00111 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00391 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99405 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00173 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46987 * 89.99991 * 24 22 20 26 26 H 1.48496 * 109.47060 * 209.99344 * 24 22 20 27 27 H 1.48499 * 109.47116 * 329.99943 * 24 22 20 28 28 H 1.08999 * 109.47369 * 270.23536 * 1 2 3 29 29 H 1.08997 * 109.47086 * 30.23536 * 1 2 3 30 30 H 1.09007 * 109.46764 * 150.23366 * 1 2 3 31 31 H 1.07998 * 119.88405 * 0.03905 * 3 2 1 32 32 H 1.08002 * 119.83330 * 179.72614 * 4 3 2 33 33 H 1.07998 * 119.94566 * 180.28063 * 5 4 3 34 34 H 0.97001 * 119.99880 * 0.02562 * 11 9 8 35 35 H 1.09007 * 109.47360 * 299.99604 * 14 12 11 36 36 H 1.08993 * 109.47210 * 60.00341 * 14 12 11 37 37 H 1.09004 * 109.47051 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47205 * 185.00272 * 15 12 11 39 39 H 1.09001 * 109.46893 * 305.00557 * 15 12 11 40 40 H 1.08998 * 109.47607 * 300.00185 * 16 15 12 41 41 H 1.09001 * 109.47493 * 60.00328 * 16 15 12 42 42 H 1.08997 * 109.47446 * 299.99938 * 17 16 15 43 43 H 1.09004 * 109.47487 * 60.00288 * 17 16 15 44 44 H 1.08997 * 109.46971 * 300.00313 * 18 17 16 45 45 H 1.08997 * 109.46791 * 60.00152 * 18 17 16 46 46 H 0.97004 * 119.99941 * 359.97438 * 19 18 17 47 47 H 0.97000 * 119.99680 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1935 0.0000 4 6 3.5819 1.1973 -0.0061 5 6 4.2835 0.0062 -0.0008 6 6 3.6050 -1.1988 0.0045 7 9 4.2908 -2.3627 0.0093 8 6 2.2064 -1.2084 0.0050 9 6 1.4731 -2.4904 0.0112 10 8 1.1715 -3.0131 1.0665 11 7 1.1382 -3.0807 -1.1533 12 6 0.4103 -4.3521 -1.1472 13 1 0.7414 -4.9562 -0.3025 14 6 -1.0902 -4.0801 -1.0226 15 6 0.6859 -5.1038 -2.4510 16 6 2.1661 -5.4851 -2.5167 17 6 2.4418 -6.2362 -3.8208 18 6 3.9222 -6.6170 -3.8869 19 7 4.1863 -7.3357 -5.1359 20 6 5.4510 -7.7794 -5.4163 21 1 6.2540 -7.5992 -4.7168 22 6 5.7014 -8.4600 -6.6000 23 7 4.7230 -8.6791 -7.4526 24 14 7.4269 -9.0646 -6.9827 25 1 7.6003 -10.4385 -6.4464 26 1 7.6319 -9.0779 -8.4534 27 1 8.4202 -8.1582 -6.3526 28 1 -0.3634 0.0042 1.0276 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6570 2.1283 0.0006 32 1 4.1166 2.1357 -0.0106 33 1 5.3634 0.0166 -0.0010 34 1 1.3790 -2.6638 -1.9953 35 1 -1.2865 -3.5446 -0.0937 36 1 -1.4212 -3.4760 -1.8672 37 1 -1.6317 -5.0261 -1.0176 38 1 0.0761 -6.0067 -2.4857 39 1 0.4374 -4.4647 -3.2983 40 1 2.7758 -4.5823 -2.4820 41 1 2.4147 -6.1242 -1.6694 42 1 1.8321 -7.1391 -3.8560 43 1 2.1933 -5.5969 -4.6680 44 1 4.5315 -5.7140 -3.8520 45 1 4.1711 -7.2563 -3.0399 46 1 3.4650 -7.4979 -5.7640 47 1 4.8978 -9.1550 -8.2795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176839008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:18 Heat of formation + Delta-G solvation = -94.143090 kcal Electronic energy + Delta-G solvation = -26685.485737 eV Core-core repulsion = 22780.974493 eV Total energy + Delta-G solvation = -3904.511244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.09324 -41.39390 -39.62688 -38.05136 -36.86363 -34.84093 -33.92846 -33.07482 -32.18348 -31.12224 -28.86173 -28.18866 -26.03638 -25.15277 -23.67593 -22.88514 -22.12362 -21.95471 -21.57328 -19.16953 -18.97636 -18.08081 -17.76710 -17.57654 -16.75550 -16.71382 -16.35596 -16.17664 -15.69606 -15.44373 -15.28406 -15.05956 -14.77504 -14.62976 -14.51162 -14.34833 -14.19199 -14.03489 -13.30611 -13.21174 -13.08931 -12.92268 -12.87376 -12.81924 -12.75949 -12.49622 -12.34199 -12.32296 -12.17591 -11.91662 -11.86859 -11.55195 -11.44570 -11.10183 -10.96887 -10.20871 -10.01227 -9.72951 -9.04726 -7.99011 -5.28619 -0.10617 0.10447 1.35504 1.44733 1.47191 1.55879 2.05705 2.46967 2.53348 3.07301 3.34075 3.47539 3.60041 3.69432 3.89296 3.97992 4.00308 4.10284 4.15643 4.24817 4.30606 4.37116 4.50067 4.56238 4.60678 4.64206 4.69073 4.73017 4.83397 4.88396 4.91950 4.94910 4.97060 5.02220 5.06442 5.14577 5.22502 5.27273 5.29668 5.36515 5.38208 5.42601 5.48463 5.49907 5.80026 6.24002 6.36348 7.03408 7.29588 8.05109 8.29832 9.24704 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.002472 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.348511 B =11322.803811 C =12677.765756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.029 4.029 3 C -0.125 4.125 4 C -0.061 4.061 5 C -0.165 4.165 6 C 0.102 3.898 7 F -0.151 7.151 8 C -0.187 4.187 9 C 0.569 3.431 10 O -0.573 6.573 11 N -0.702 5.702 12 C 0.140 3.860 13 H 0.065 0.935 14 C -0.155 4.155 15 C -0.115 4.115 16 C -0.107 4.107 17 C -0.110 4.110 18 C 0.148 3.852 19 N -0.748 5.748 20 C -0.252 4.252 21 H 0.071 0.929 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.977 3.023 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.270 1.270 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.155 0.845 34 H 0.412 0.588 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.014 0.986 45 H 0.011 0.989 46 H 0.375 0.625 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.944 25.552 15.912 32.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.030 4.030 3 C -0.142 4.142 4 C -0.079 4.079 5 C -0.183 4.183 6 C 0.082 3.918 7 F -0.130 7.130 8 C -0.191 4.191 9 C 0.355 3.645 10 O -0.453 6.453 11 N -0.353 5.353 12 C 0.036 3.964 13 H 0.084 0.916 14 C -0.213 4.213 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.148 4.148 18 C 0.022 3.978 19 N -0.391 5.391 20 C -0.384 4.384 21 H 0.089 0.911 22 C -0.268 4.268 23 N -0.620 5.620 24 Si 0.805 3.195 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.195 1.195 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.188 0.812 32 H 0.192 0.808 33 H 0.172 0.828 34 H 0.248 0.752 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.032 0.968 45 H 0.029 0.971 46 H 0.207 0.793 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.969 25.083 16.685 32.416 hybrid contribution 1.225 -1.121 -0.799 1.843 sum -10.744 23.963 15.886 30.692 Atomic orbital electron populations 1.20967 0.88912 1.04402 1.03524 1.20079 0.97336 0.90586 0.95000 1.21497 0.94511 0.98078 1.00160 1.21620 0.94294 0.98229 0.93742 1.21431 1.02233 0.90530 1.04129 1.18099 0.88709 0.82358 1.02623 1.91510 1.79771 1.47881 1.93845 1.19901 0.92287 0.94935 1.11964 1.18292 0.77980 0.84169 0.84025 1.90776 1.56236 1.65741 1.32511 1.46129 1.57112 1.23780 1.08230 1.21091 0.92579 0.83841 0.98895 0.91633 1.22106 0.93869 1.03224 1.02116 1.21850 0.95783 1.01312 0.96335 1.21428 0.97096 0.99638 0.96313 1.21585 0.94609 1.00288 0.98352 1.20834 0.95789 0.93593 0.87575 1.42608 1.08162 1.67498 1.20806 1.19648 0.88116 1.28457 1.02194 0.91064 1.25620 1.01747 1.02224 0.97170 1.69815 1.32708 1.47847 1.11595 0.85099 0.79428 0.78222 0.76776 1.21223 1.21659 1.19518 0.90339 0.87559 0.92175 0.81165 0.80838 0.82777 0.75189 0.93581 0.90679 0.90184 0.88946 0.89504 0.92398 0.92844 0.92036 0.91706 0.96828 0.97072 0.79317 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.62 71.24 0.69 -0.68 16 2 C -0.03 -0.43 5.91 -19.61 -0.12 -0.55 16 3 C -0.12 -1.15 9.68 22.23 0.22 -0.93 16 4 C -0.06 -0.56 10.03 22.31 0.22 -0.34 16 5 C -0.16 -2.52 10.01 22.28 0.22 -2.29 16 6 C 0.10 2.31 7.29 22.68 0.17 2.47 16 7 F -0.15 -4.34 16.83 44.97 0.76 -3.58 16 8 C -0.19 -4.06 5.64 -20.05 -0.11 -4.17 16 9 C 0.57 14.59 5.33 86.74 0.46 15.05 16 10 O -0.57 -19.27 16.77 -3.93 -0.07 -19.33 16 11 N -0.70 -14.35 4.53 -445.55 -2.02 -16.37 16 12 C 0.14 2.80 2.57 44.99 0.12 2.92 16 13 H 0.07 1.66 7.58 -2.39 -0.02 1.65 16 14 C -0.16 -2.49 9.48 71.98 0.68 -1.81 16 15 C -0.12 -2.17 4.75 30.59 0.15 -2.02 16 16 C -0.11 -2.75 5.10 30.59 0.16 -2.59 16 17 C -0.11 -3.58 5.33 30.60 0.16 -3.41 16 18 C 0.15 6.38 6.26 86.38 0.54 6.92 16 19 N -0.75 -40.33 5.60 -343.45 -1.92 -42.25 16 20 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 21 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 23 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 24 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.11 0.55 8.09 -2.39 -0.02 0.53 16 30 H 0.06 0.80 7.08 -2.38 -0.02 0.79 16 31 H 0.17 0.38 8.06 -2.91 -0.02 0.35 16 32 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 33 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.41 6.84 8.59 -92.71 -0.80 6.04 16 35 H 0.05 0.87 8.14 -2.38 -0.02 0.86 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.52 7.75 -2.39 -0.02 1.51 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.37 21.06 7.67 -92.71 -0.71 20.35 16 47 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -78.09 396.80 3.38 -74.71 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -0.54 Total: 27.32 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 4.86 Total: -9.46 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -3.66 Total: -118.98 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.07 Total: -19.33 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.76 Total: -3.58 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -78.09 3.38 -74.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176839008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.436 kcal (2) G-P(sol) polarization free energy of solvation -78.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds