Wall clock time and date at job start Sat Apr 11 2020 00:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35508 * 116.99814 * 2 1 4 4 C 1.39645 * 120.48880 * 179.97438 * 3 2 1 5 5 C 1.39152 * 118.20278 * 180.02562 * 4 3 2 6 6 C 1.48445 * 120.51516 * 179.97438 * 5 4 3 7 7 O 1.21484 * 120.00102 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00208 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00289 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47152 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.47371 * 179.97438 * 10 9 8 12 12 C 1.52991 * 109.47133 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47133 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47486 * 180.02562 * 13 12 11 15 15 N 1.46494 * 109.47271 * 180.02562 * 14 13 12 16 16 C 1.36943 * 120.00083 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99902 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99676 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47182 * 60.00237 * 20 18 16 22 22 H 1.48500 * 109.46883 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47131 * 300.00032 * 20 18 16 24 24 N 1.33280 * 118.96716 * 0.02562 * 5 4 3 25 25 C 1.31529 * 120.88267 * 359.95873 * 24 5 4 26 26 N 1.31883 * 121.99070 * 0.04167 * 25 24 5 27 27 H 1.09001 * 109.47618 * 300.00618 * 1 2 3 28 28 H 1.09004 * 109.46726 * 60.00605 * 1 2 3 29 29 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.90013 * 359.74389 * 4 3 2 31 31 H 0.97008 * 119.99727 * 359.97438 * 8 6 5 32 32 H 1.09009 * 109.47176 * 299.99118 * 9 8 6 33 33 H 1.08995 * 109.47858 * 59.99717 * 9 8 6 34 34 H 1.08997 * 109.46846 * 299.99500 * 10 9 8 35 35 H 1.09004 * 109.47408 * 59.99816 * 10 9 8 36 36 H 1.09002 * 109.46999 * 300.00281 * 11 10 9 37 37 H 1.09004 * 109.46632 * 59.99797 * 11 10 9 38 38 H 1.09002 * 109.47731 * 300.00228 * 12 11 10 39 39 H 1.09004 * 109.47204 * 60.00543 * 12 11 10 40 40 H 1.09002 * 109.46999 * 300.00677 * 13 12 11 41 41 H 1.08996 * 109.46782 * 59.99918 * 13 12 11 42 42 H 1.09002 * 109.47228 * 300.00137 * 14 13 12 43 43 H 1.08999 * 109.47267 * 59.99500 * 14 13 12 44 44 H 0.97000 * 120.00288 * 359.97438 * 15 14 13 45 45 H 0.96996 * 119.99699 * 180.02562 * 19 18 16 46 46 H 1.08003 * 119.00036 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4380 1.2924 0.0005 5 6 4.0197 2.5565 0.0011 6 6 5.4966 2.7066 0.0022 7 8 6.2073 1.7213 0.0022 8 7 6.0490 3.9359 0.0032 9 6 7.5065 4.0840 0.0038 10 6 7.8680 5.5708 0.0043 11 6 9.3902 5.7255 0.0055 12 6 9.7517 7.2121 0.0054 13 6 11.2739 7.3669 0.0060 14 6 11.6354 8.8535 0.0065 15 7 13.0928 9.0017 0.0064 16 6 13.6541 10.2508 0.0063 17 1 13.0223 11.1267 0.0066 18 6 15.0351 10.3911 0.0068 19 7 15.8051 9.3237 0.0069 20 14 15.8007 12.0950 0.0073 21 1 15.3647 12.8332 1.2198 22 1 17.2807 11.9727 0.0072 23 1 15.3655 12.8336 -1.2051 24 7 3.2303 3.6304 0.0016 25 6 1.9210 3.5057 0.0007 26 7 1.3314 2.3260 0.0002 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.0480 0.4013 0.0051 31 1 5.4815 4.7227 0.0028 32 1 7.9196 3.6091 0.8938 33 1 7.9203 3.6102 -0.8863 34 1 7.4550 6.0454 -0.8858 35 1 7.4542 6.0451 0.8942 36 1 9.8029 5.2509 0.8958 37 1 9.8043 5.2511 -0.8842 38 1 9.3390 7.6864 -0.8850 39 1 9.3375 7.6869 0.8950 40 1 11.6869 6.8926 0.8962 41 1 11.6876 6.8923 -0.8837 42 1 11.2223 9.3283 -0.8835 43 1 11.2216 9.3278 0.8964 44 1 13.6603 8.2150 0.0065 45 1 16.7701 9.4218 0.0076 46 1 1.3102 4.3965 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178498098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:22 Heat of formation + Delta-G solvation = -32.667459 kcal Electronic energy + Delta-G solvation = -24709.257396 eV Core-core repulsion = 20827.331897 eV Total energy + Delta-G solvation = -3881.925499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96480 -40.05461 -38.95974 -36.88579 -35.48798 -34.23263 -33.77174 -32.45434 -31.87433 -30.02954 -28.37199 -27.22506 -25.41341 -24.89401 -23.86527 -22.31636 -21.60152 -20.95910 -20.64113 -19.33886 -18.87120 -17.00498 -16.93361 -16.86318 -16.41858 -16.31414 -16.06428 -15.52700 -15.48946 -14.95440 -14.76053 -14.63234 -14.21397 -14.15580 -13.47203 -13.38643 -12.97969 -12.72529 -12.71006 -12.35446 -12.32705 -11.74358 -11.51050 -11.36621 -11.21246 -11.01398 -10.91066 -10.89915 -10.71130 -10.68279 -10.40903 -10.23826 -10.11070 -9.95404 -9.83508 -9.61823 -9.49068 -8.82010 -6.86766 -5.72020 -3.00416 -0.11896 0.35860 2.05388 2.24291 2.63089 3.21687 3.34539 3.35709 3.46979 3.50789 3.52317 4.09401 4.30636 4.51003 4.54762 4.64025 4.65167 4.67145 4.74555 4.94143 4.94355 4.97072 5.22593 5.33415 5.39819 5.43386 5.56727 5.64416 5.69372 5.72194 5.92084 5.97107 5.98848 6.07039 6.15140 6.35923 6.36440 6.38676 6.43841 6.51103 6.94266 6.97318 6.98283 7.30472 7.64537 7.73317 8.47485 9.57974 10.17803 10.52284 11.51101 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.054409 B = 0.001271 C = 0.001244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.495163 B =22030.288999 C =22497.827107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.366 3.634 4 C -0.184 4.184 5 C 0.159 3.841 6 C 0.569 3.431 7 O -0.520 6.520 8 N -0.703 5.703 9 C 0.114 3.886 10 C -0.131 4.131 11 C -0.116 4.116 12 C -0.113 4.113 13 C -0.127 4.127 14 C 0.152 3.848 15 N -0.735 5.735 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 N -0.520 5.520 25 C 0.338 3.662 26 N -0.565 5.565 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.413 0.587 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.974 -18.385 -0.009 39.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.177 3.823 4 C -0.208 4.208 5 C 0.015 3.985 6 C 0.352 3.648 7 O -0.395 6.395 8 N -0.354 5.354 9 C -0.008 4.008 10 C -0.169 4.169 11 C -0.154 4.154 12 C -0.152 4.152 13 C -0.165 4.165 14 C 0.024 3.976 15 N -0.379 5.379 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 N -0.241 5.241 25 C 0.050 3.950 26 N -0.296 5.296 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.185 0.815 31 H 0.250 0.750 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -34.821 -18.446 -0.008 39.405 hybrid contribution 0.481 0.450 0.000 0.659 sum -34.340 -17.996 -0.008 38.770 Atomic orbital electron populations 1.23047 0.75980 1.03862 1.03017 1.86278 1.23887 1.23466 1.86325 1.20057 0.89234 0.85259 0.87717 1.21934 0.92793 1.00670 1.05400 1.21411 0.94947 0.88737 0.93451 1.17670 0.85298 0.84106 0.77751 1.90839 1.61388 1.38074 1.49206 1.45876 1.08735 1.07976 1.72852 1.21596 0.78441 0.97750 1.03043 1.21839 0.97918 0.94096 1.03060 1.21519 0.93481 0.97732 1.02683 1.21500 0.96685 0.95012 1.01954 1.21730 0.94452 0.98283 1.01997 1.20657 0.86551 0.92829 0.97529 1.42389 1.00034 1.06017 1.89478 1.19221 0.90055 0.85284 1.42565 0.91278 1.24743 0.96096 0.97109 1.03137 1.69654 1.03627 1.27206 1.57903 0.86257 0.78186 0.83865 0.77836 1.21281 1.21666 1.21284 1.68366 1.06764 1.32855 1.16161 1.24738 0.87914 0.93933 0.88443 1.68071 1.42028 0.99338 1.20116 0.91680 0.91675 0.87833 0.81539 0.75046 0.90818 0.90827 0.91067 0.91071 0.91566 0.91573 0.92062 0.92060 0.92091 0.92085 0.96595 0.96593 0.78337 0.93498 0.77508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.14 10.41 101.05 1.05 1.19 16 2 O -0.30 -2.09 10.49 -18.22 -0.19 -2.28 16 3 C 0.37 2.87 7.54 -16.68 -0.13 2.74 16 4 C -0.18 -1.53 9.68 -38.72 -0.37 -1.91 16 5 C 0.16 1.38 6.79 -82.69 -0.56 0.82 16 6 C 0.57 5.72 7.83 -12.06 -0.09 5.63 16 7 O -0.52 -6.76 16.42 5.38 0.09 -6.67 16 8 N -0.70 -5.76 5.55 -61.06 -0.34 -6.10 16 9 C 0.11 0.96 5.67 -4.04 -0.02 0.93 16 10 C -0.13 -1.01 5.33 -26.73 -0.14 -1.15 16 11 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 12 C -0.11 -1.37 5.21 -26.73 -0.14 -1.51 16 13 C -0.13 -2.05 5.33 -26.73 -0.14 -2.20 16 14 C 0.15 3.15 6.26 -4.05 -0.03 3.13 16 15 N -0.74 -19.44 5.60 -59.91 -0.34 -19.77 16 16 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.94 -28.94 13.06 55.49 0.72 -28.21 16 20 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 N -0.52 -3.85 9.70 -11.20 -0.11 -3.95 16 25 C 0.34 2.00 12.27 -92.31 -1.13 0.86 16 26 N -0.56 -4.00 9.36 -14.65 -0.14 -4.14 16 27 H 0.06 0.24 8.12 -51.93 -0.42 -0.18 16 28 H 0.06 0.24 8.12 -51.93 -0.42 -0.18 16 29 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.17 1.33 7.73 -52.49 -0.41 0.92 16 31 H 0.41 2.72 7.86 -40.82 -0.32 2.40 16 32 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.21 0.44 8.06 -52.48 -0.42 0.02 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -34.67 393.61 -8.83 -43.50 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.35 Total: 4.31 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.10 Total: -0.38 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -0.20 Total: -62.17 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.10 Total: -8.95 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.67 -8.83 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178498098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.837 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds