Wall clock time and date at job start Sat Apr 11 2020 00:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35508 * 116.99814 * 2 1 4 4 C 1.39645 * 120.48880 * 179.97438 * 3 2 1 5 5 C 1.39152 * 118.20278 * 180.02562 * 4 3 2 6 6 C 1.48445 * 120.51516 * 179.97438 * 5 4 3 7 7 O 1.21484 * 120.00102 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00208 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00289 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47152 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.47371 * 179.97438 * 10 9 8 12 12 C 1.52991 * 109.47133 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47133 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47486 * 180.02562 * 13 12 11 15 15 N 1.46494 * 109.47271 * 180.02562 * 14 13 12 16 16 C 1.36943 * 120.00083 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99902 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99676 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47182 * 60.00237 * 20 18 16 22 22 H 1.48500 * 109.46883 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47131 * 300.00032 * 20 18 16 24 24 N 1.33280 * 118.96716 * 0.02562 * 5 4 3 25 25 C 1.31529 * 120.88267 * 359.95873 * 24 5 4 26 26 N 1.31883 * 121.99070 * 0.04167 * 25 24 5 27 27 H 1.09001 * 109.47618 * 300.00618 * 1 2 3 28 28 H 1.09004 * 109.46726 * 60.00605 * 1 2 3 29 29 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.90013 * 359.74389 * 4 3 2 31 31 H 0.97008 * 119.99727 * 359.97438 * 8 6 5 32 32 H 1.09009 * 109.47176 * 299.99118 * 9 8 6 33 33 H 1.08995 * 109.47858 * 59.99717 * 9 8 6 34 34 H 1.08997 * 109.46846 * 299.99500 * 10 9 8 35 35 H 1.09004 * 109.47408 * 59.99816 * 10 9 8 36 36 H 1.09002 * 109.46999 * 300.00281 * 11 10 9 37 37 H 1.09004 * 109.46632 * 59.99797 * 11 10 9 38 38 H 1.09002 * 109.47731 * 300.00228 * 12 11 10 39 39 H 1.09004 * 109.47204 * 60.00543 * 12 11 10 40 40 H 1.09002 * 109.46999 * 300.00677 * 13 12 11 41 41 H 1.08996 * 109.46782 * 59.99918 * 13 12 11 42 42 H 1.09002 * 109.47228 * 300.00137 * 14 13 12 43 43 H 1.08999 * 109.47267 * 59.99500 * 14 13 12 44 44 H 0.97000 * 120.00288 * 359.97438 * 15 14 13 45 45 H 0.96996 * 119.99699 * 180.02562 * 19 18 16 46 46 H 1.08003 * 119.00036 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4380 1.2924 0.0005 5 6 4.0197 2.5565 0.0011 6 6 5.4966 2.7066 0.0022 7 8 6.2073 1.7213 0.0022 8 7 6.0490 3.9359 0.0032 9 6 7.5065 4.0840 0.0038 10 6 7.8680 5.5708 0.0043 11 6 9.3902 5.7255 0.0055 12 6 9.7517 7.2121 0.0054 13 6 11.2739 7.3669 0.0060 14 6 11.6354 8.8535 0.0065 15 7 13.0928 9.0017 0.0064 16 6 13.6541 10.2508 0.0063 17 1 13.0223 11.1267 0.0066 18 6 15.0351 10.3911 0.0068 19 7 15.8051 9.3237 0.0069 20 14 15.8007 12.0950 0.0073 21 1 15.3647 12.8332 1.2198 22 1 17.2807 11.9727 0.0072 23 1 15.3655 12.8336 -1.2051 24 7 3.2303 3.6304 0.0016 25 6 1.9210 3.5057 0.0007 26 7 1.3314 2.3260 0.0002 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.0480 0.4013 0.0051 31 1 5.4815 4.7227 0.0028 32 1 7.9196 3.6091 0.8938 33 1 7.9203 3.6102 -0.8863 34 1 7.4550 6.0454 -0.8858 35 1 7.4542 6.0451 0.8942 36 1 9.8029 5.2509 0.8958 37 1 9.8043 5.2511 -0.8842 38 1 9.3390 7.6864 -0.8850 39 1 9.3375 7.6869 0.8950 40 1 11.6869 6.8926 0.8962 41 1 11.6876 6.8923 -0.8837 42 1 11.2223 9.3283 -0.8835 43 1 11.2216 9.3278 0.8964 44 1 13.6603 8.2150 0.0065 45 1 16.7701 9.4218 0.0076 46 1 1.3102 4.3965 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178498098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:21 Heat of formation + Delta-G solvation = -57.638018 kcal Electronic energy + Delta-G solvation = -24710.340200 eV Core-core repulsion = 20827.331897 eV Total energy + Delta-G solvation = -3883.008304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.52021 -40.76748 -39.48847 -37.91944 -36.81332 -35.40950 -34.58507 -33.44733 -32.99802 -31.51768 -28.92370 -28.30862 -26.41465 -25.42380 -25.27360 -23.61104 -22.32864 -22.10530 -21.72636 -19.94641 -19.42817 -19.09884 -17.51269 -17.44466 -17.11851 -17.06718 -16.67147 -16.63129 -16.41957 -15.97647 -15.58621 -15.48350 -15.35701 -15.18939 -14.97279 -14.83564 -14.06996 -13.89711 -13.42563 -13.03308 -13.01589 -12.93300 -12.73612 -12.62306 -12.39145 -12.21265 -12.04458 -12.02312 -11.79811 -11.78967 -11.71483 -11.58334 -11.35380 -11.31491 -10.91502 -10.69156 -10.38404 -10.21239 -9.00527 -7.95452 -5.25059 -0.73803 -0.17875 1.47298 1.51162 1.51880 1.53970 1.57441 2.01520 2.56649 2.63689 2.77161 2.92525 3.37930 3.51607 3.73002 3.74154 3.96664 4.03988 4.06627 4.26505 4.31493 4.34985 4.37519 4.37675 4.42964 4.61328 4.65261 4.69227 4.79191 4.85730 4.97513 4.99155 4.99742 5.08605 5.16925 5.26229 5.30922 5.39944 5.48422 5.50841 5.56178 5.59262 5.89868 6.27216 6.30347 6.76674 6.94915 7.32632 8.10056 8.32861 9.28245 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.054409 B = 0.001271 C = 0.001244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.495163 B =22030.288999 C =22497.827107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.308 6.308 3 C 0.362 3.638 4 C -0.196 4.196 5 C 0.152 3.848 6 C 0.567 3.433 7 O -0.558 6.558 8 N -0.691 5.691 9 C 0.116 3.884 10 C -0.119 4.119 11 C -0.113 4.113 12 C -0.104 4.104 13 C -0.117 4.117 14 C 0.147 3.853 15 N -0.751 5.751 16 C -0.253 4.253 17 H 0.076 0.924 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 0.977 3.023 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.276 1.276 24 N -0.523 5.523 25 C 0.340 3.660 26 N -0.566 5.566 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.126 0.874 30 H 0.162 0.838 31 H 0.423 0.577 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.178 -17.253 -0.009 40.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.173 3.827 4 C -0.220 4.220 5 C 0.008 3.992 6 C 0.350 3.650 7 O -0.435 6.435 8 N -0.342 5.342 9 C -0.007 4.007 10 C -0.156 4.156 11 C -0.151 4.151 12 C -0.142 4.142 13 C -0.155 4.155 14 C 0.021 3.979 15 N -0.394 5.394 16 C -0.384 4.384 17 H 0.094 0.906 18 C -0.268 4.268 19 N -0.622 5.622 20 Si 0.805 3.195 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.202 1.202 24 N -0.244 5.244 25 C 0.053 3.947 26 N -0.298 5.298 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.144 0.856 30 H 0.180 0.820 31 H 0.261 0.739 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.204 0.796 45 H 0.061 0.939 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -37.095 -17.282 -0.008 40.923 hybrid contribution 1.056 0.088 0.000 1.060 sum -36.039 -17.194 -0.008 39.930 Atomic orbital electron populations 1.23291 0.74326 1.05514 1.03204 1.86269 1.25568 1.23260 1.86053 1.20142 0.89151 0.85835 0.87525 1.21947 0.93305 1.00552 1.06244 1.21234 0.94382 0.89332 0.94262 1.17897 0.85857 0.84038 0.77179 1.90814 1.62362 1.39233 1.51109 1.45807 1.08814 1.07848 1.71738 1.21541 0.78457 0.98207 1.02444 1.21706 0.96273 0.93516 1.04147 1.21446 0.95040 0.95961 1.02634 1.21421 0.93288 0.96776 1.02737 1.21641 0.97560 0.94874 1.01411 1.20883 0.83518 0.96036 0.97437 1.42662 1.02300 1.04930 1.89495 1.19669 0.90641 0.86512 1.41625 0.90638 1.25628 0.96659 1.01083 1.03472 1.69821 1.03546 1.29452 1.59386 0.85163 0.76783 0.79231 0.78305 1.20221 1.21964 1.20228 1.68398 1.07363 1.32140 1.16498 1.25547 0.87692 0.94733 0.86743 1.68167 1.41932 0.99456 1.20207 0.91451 0.91445 0.85551 0.82041 0.73914 0.91499 0.91508 0.89968 0.89972 0.91719 0.91729 0.91271 0.91266 0.92708 0.92702 0.96320 0.96313 0.79582 0.93925 0.73781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.41 113.37 1.18 1.38 16 2 O -0.31 -4.18 10.49 -88.10 -0.92 -5.11 16 3 C 0.36 5.50 7.54 84.91 0.64 6.14 16 4 C -0.20 -3.32 9.68 22.83 0.22 -3.10 16 5 C 0.15 2.60 6.79 41.87 0.28 2.89 16 6 C 0.57 11.37 7.83 86.96 0.68 12.05 16 7 O -0.56 -14.93 16.42 -3.66 -0.06 -14.99 16 8 N -0.69 -10.61 5.55 -465.39 -2.58 -13.19 16 9 C 0.12 1.83 5.67 86.38 0.49 2.32 16 10 C -0.12 -1.56 5.33 30.60 0.16 -1.40 16 11 C -0.11 -2.00 5.21 30.59 0.16 -1.84 16 12 C -0.10 -2.31 5.21 30.59 0.16 -2.15 16 13 C -0.12 -3.70 5.33 30.59 0.16 -3.54 16 14 C 0.15 6.03 6.26 86.38 0.54 6.57 16 15 N -0.75 -39.96 5.60 -343.47 -1.92 -41.88 16 16 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 17 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 18 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 19 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 20 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 N -0.52 -6.95 9.70 -189.36 -1.84 -8.78 16 25 C 0.34 3.31 12.27 180.94 2.22 5.53 16 26 N -0.57 -7.21 9.36 -313.01 -2.93 -10.14 16 27 H 0.07 0.41 8.12 -2.39 -0.02 0.39 16 28 H 0.07 0.41 8.12 -2.38 -0.02 0.39 16 29 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.16 2.78 7.73 -2.91 -0.02 2.76 16 31 H 0.42 4.81 7.86 -92.70 -0.73 4.08 16 32 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.37 20.98 7.67 -92.71 -0.71 20.27 16 45 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.25 0.24 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -74.67 393.61 -0.19 -74.86 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.45 Total: 24.01 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 8.21 Total: 7.04 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -8.99 Total: -134.56 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.98 Total: -20.09 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -74.67 -0.19 -74.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178498098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.221 kcal (2) G-P(sol) polarization free energy of solvation -74.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds