Wall clock time and date at job start Sat Apr 11 2020 00:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38214 * 120.08814 * 2 1 4 4 F 1.35101 * 119.95037 * 359.97438 * 3 2 1 5 5 C 1.38544 * 120.09415 * 180.25379 * 3 2 1 6 6 C 1.38346 * 120.26932 * 359.45116 * 5 3 2 7 7 C 1.37946 * 120.16686 * 0.55322 * 6 5 3 8 8 C 1.39530 * 120.08782 * 179.97438 * 2 1 3 9 9 C 1.47853 * 120.13279 * 0.03873 * 8 2 1 10 10 O 1.21552 * 119.99729 * 6.22786 * 9 8 2 11 11 N 1.34773 * 119.99750 * 186.22253 * 9 8 2 12 12 C 1.46501 * 119.99874 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47467 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47189 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46830 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46831 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.46900 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47177 * 180.02562 * 17 16 15 19 19 C 1.36933 * 120.00234 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99958 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00003 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99900 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00093 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46750 * 90.00793 * 23 21 19 25 25 H 1.48498 * 109.47215 * 210.00153 * 23 21 19 26 26 H 1.48496 * 109.47205 * 330.00856 * 23 21 19 27 27 H 1.09001 * 109.47299 * 96.58418 * 1 2 3 28 28 H 1.09003 * 109.47139 * 216.57984 * 1 2 3 29 29 H 1.08998 * 109.47254 * 336.58191 * 1 2 3 30 30 H 1.08002 * 119.86392 * 179.72362 * 5 3 2 31 31 H 1.07996 * 119.91389 * 180.24969 * 6 5 3 32 32 H 1.08005 * 120.04429 * 179.70314 * 7 6 5 33 33 H 0.97001 * 120.00139 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.47082 * 300.00168 * 12 11 9 35 35 H 1.08992 * 109.47209 * 60.00182 * 12 11 9 36 36 H 1.08997 * 109.46785 * 300.00256 * 13 12 11 37 37 H 1.09001 * 109.46984 * 59.99831 * 13 12 11 38 38 H 1.08997 * 109.46787 * 299.99292 * 14 13 12 39 39 H 1.08988 * 109.47057 * 59.99995 * 14 13 12 40 40 H 1.08997 * 109.47018 * 300.00061 * 15 14 13 41 41 H 1.09001 * 109.47111 * 59.99856 * 15 14 13 42 42 H 1.08997 * 109.47687 * 300.00041 * 16 15 14 43 43 H 1.09001 * 109.47073 * 60.00222 * 16 15 14 44 44 H 1.08997 * 109.47302 * 300.00667 * 17 16 15 45 45 H 1.09001 * 109.46758 * 60.00419 * 17 16 15 46 46 H 0.97001 * 119.99986 * 0.02562 * 18 17 16 47 47 H 0.96993 * 119.99870 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1999 1.1959 0.0000 4 9 1.5251 2.3664 -0.0005 5 6 3.5853 1.1961 -0.0053 6 6 4.2828 0.0013 0.0008 7 6 3.6024 -1.1986 0.0007 8 6 2.2064 -1.2073 0.0005 9 6 1.4721 -2.4906 0.0002 10 8 0.2621 -2.4983 -0.1147 11 7 2.1445 -3.6517 0.1273 12 6 1.4169 -4.9233 0.1264 13 6 2.4081 -6.0781 0.2843 14 6 1.6483 -7.4061 0.2827 15 6 2.6395 -8.5610 0.4399 16 6 1.8797 -9.8889 0.4390 17 6 2.8710 -11.0438 0.5956 18 7 2.1435 -12.3154 0.5941 19 6 2.8266 -13.4952 0.7230 20 1 3.9018 -13.4883 0.8254 21 6 2.1373 -14.7001 0.7211 22 7 2.7940 -15.8341 0.8446 23 14 0.2779 -14.7121 0.5433 24 1 -0.0813 -14.7896 -0.8956 25 1 -0.2800 -15.8889 1.2568 26 1 -0.2833 -13.4674 1.1272 27 1 -0.3634 -0.1178 -1.0209 28 1 -0.3633 -0.8253 0.6124 29 1 -0.3634 0.9430 0.4084 30 1 4.1230 2.1327 -0.0098 31 1 5.3627 0.0082 0.0007 32 1 4.1489 -2.1302 0.0007 33 1 3.1101 -3.6454 0.2193 34 1 0.7086 -4.9371 0.9548 35 1 0.8778 -5.0328 -0.8145 36 1 3.1167 -6.0644 -0.5438 37 1 2.9469 -5.9684 1.2254 38 1 0.9395 -7.4201 1.1106 39 1 1.1099 -7.5155 -0.6586 40 1 3.3481 -8.5468 -0.3882 41 1 3.1784 -8.4517 1.3811 42 1 1.1713 -9.9029 1.2673 43 1 1.3406 -9.9984 -0.5020 44 1 3.5791 -11.0297 -0.2330 45 1 3.4105 -10.9345 1.5364 46 1 1.1780 -12.3217 0.5018 47 1 2.3124 -16.6760 0.8428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178543914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:26 Heat of formation + Delta-G solvation = -67.014529 kcal Electronic energy + Delta-G solvation = -25040.355265 eV Core-core repulsion = 21137.020404 eV Total energy + Delta-G solvation = -3903.334861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.43173 -40.84983 -38.76103 -36.98497 -35.69116 -34.23180 -33.18928 -32.28198 -31.35540 -30.21068 -27.86369 -27.04387 -24.78270 -23.75184 -22.41429 -21.89001 -21.44841 -20.86507 -20.73936 -18.64497 -17.47730 -17.26002 -16.59916 -16.46514 -16.38850 -16.19590 -16.03934 -15.43693 -14.65887 -14.53188 -14.43344 -14.00573 -13.91903 -13.71562 -13.55828 -13.28833 -13.04356 -12.82686 -12.72053 -12.52762 -12.46721 -12.33183 -11.85702 -11.83216 -11.63741 -11.48730 -11.03838 -10.87870 -10.80590 -10.39207 -10.38044 -10.12361 -10.03559 -9.72733 -9.57277 -9.41210 -9.23767 -8.87359 -7.20682 -5.75414 -3.10502 0.11516 0.53007 2.26499 2.60449 3.11519 3.38754 3.41808 3.46313 3.65247 4.03094 4.09569 4.24963 4.32071 4.45524 4.60798 4.62012 4.65028 4.82954 5.00818 5.10708 5.12170 5.21823 5.27605 5.30469 5.36696 5.45333 5.46821 5.51242 5.56627 5.59818 5.60857 5.65499 5.74953 5.83915 5.87363 5.99854 6.04272 6.10927 6.19985 6.20945 6.22861 6.36759 6.78629 6.82790 6.99066 7.71883 8.01602 8.44054 9.23657 9.96282 10.16609 11.43170 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.038366 B = 0.001419 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.645709 B =19729.065159 C =20405.853865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C 0.086 3.914 4 F -0.133 7.133 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.092 4.092 8 C -0.114 4.114 9 C 0.556 3.444 10 O -0.525 6.525 11 N -0.724 5.724 12 C 0.117 3.883 13 C -0.132 4.132 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.131 4.131 17 C 0.156 3.844 18 N -0.759 5.759 19 C -0.245 4.245 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.936 5.936 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 38.928 -1.913 39.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C 0.067 3.933 4 F -0.112 7.112 5 C -0.143 4.143 6 C -0.123 4.123 7 C -0.111 4.111 8 C -0.117 4.117 9 C 0.344 3.656 10 O -0.403 6.403 11 N -0.376 5.376 12 C -0.006 4.006 13 C -0.170 4.170 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.169 4.169 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.375 4.375 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.146 38.768 -1.964 38.835 hybrid contribution -0.780 0.062 -0.088 0.788 sum 0.366 38.830 -2.053 38.886 Atomic orbital electron populations 1.21050 0.88821 1.03751 1.04252 1.20073 0.97984 0.90484 0.97231 1.17430 0.90026 0.81034 1.04793 1.91511 1.80344 1.45396 1.93933 1.21381 0.92145 1.00318 1.00477 1.20960 1.00666 0.91059 0.99621 1.21377 0.92737 0.99050 0.97943 1.19635 0.93496 0.92842 1.05704 1.18114 0.87102 0.83538 0.76870 1.90762 1.13565 1.87026 1.48931 1.45962 1.11096 1.06027 1.74500 1.21498 0.95044 0.81229 1.02790 1.21836 0.98300 0.94011 1.02806 1.21515 0.98468 0.92882 1.02578 1.21490 0.97915 0.93647 1.02098 1.21783 0.99017 0.94242 1.01831 1.20637 0.93587 0.84553 0.98329 1.42745 1.05213 1.02269 1.90175 1.19092 0.93321 0.82838 1.42201 0.89273 1.24684 0.97407 0.95169 1.02037 1.69706 1.34485 0.96820 1.57355 0.86519 0.87145 0.76866 0.77845 1.21081 1.21707 1.20339 0.90106 0.88046 0.91901 0.84146 0.84153 0.84800 0.76440 0.91091 0.91072 0.91156 0.91149 0.91613 0.91610 0.91878 0.91892 0.92134 0.92129 0.95715 0.95765 0.80718 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 8.61 36.00 0.31 -0.76 16 2 C -0.06 -0.47 5.92 -104.15 -0.62 -1.09 16 3 C 0.09 0.65 7.24 -39.48 -0.29 0.37 16 4 F -0.13 -1.12 16.37 2.25 0.04 -1.08 16 5 C -0.12 -0.65 10.02 -39.43 -0.40 -1.05 16 6 C -0.11 -0.43 10.03 -39.65 -0.40 -0.82 16 7 C -0.09 -0.44 9.52 -39.18 -0.37 -0.82 16 8 C -0.11 -0.86 5.87 -104.98 -0.62 -1.48 16 9 C 0.56 5.03 7.70 -12.33 -0.09 4.94 16 10 O -0.53 -6.39 13.35 5.32 0.07 -6.32 16 11 N -0.72 -4.85 5.51 -61.25 -0.34 -5.19 16 12 C 0.12 0.87 5.67 -4.04 -0.02 0.85 16 13 C -0.13 -0.87 5.33 -26.73 -0.14 -1.01 16 14 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 15 C -0.11 -1.24 5.21 -26.73 -0.14 -1.37 16 16 C -0.13 -1.92 5.33 -26.73 -0.14 -2.07 16 17 C 0.16 3.03 6.26 -4.04 -0.03 3.01 16 18 N -0.76 -18.57 5.41 -59.91 -0.32 -18.89 16 19 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 20 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -29.78 13.97 55.49 0.78 -29.01 16 23 Si 0.89 22.44 27.74 -169.99 -4.71 17.72 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.10 1.01 5.86 -51.93 -0.30 0.71 16 29 H 0.06 0.48 7.46 -51.93 -0.39 0.10 16 30 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 31 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 32 H 0.13 0.28 6.45 -52.48 -0.34 -0.06 16 33 H 0.40 1.58 6.55 -40.82 -0.27 1.31 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.58 8.14 -51.94 -0.42 0.16 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 8.56 5.53 -40.82 -0.23 8.34 16 47 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 387.13 15.07 5.83 5.83 Total: -1.00 -34.67 387.13 -9.45 -44.12 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.46 Total: 2.54 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -3.34 Total: -9.73 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.11 Total: -53.08 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: 0.07 Total: -6.32 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.67 -9.45 -44.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178543914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.895 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds