Wall clock time and date at job start Sat Apr 11 2020 00:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38214 * 120.08814 * 2 1 4 4 F 1.35101 * 119.95037 * 359.97438 * 3 2 1 5 5 C 1.38544 * 120.09415 * 180.25379 * 3 2 1 6 6 C 1.38346 * 120.26932 * 359.45116 * 5 3 2 7 7 C 1.37946 * 120.16686 * 0.55322 * 6 5 3 8 8 C 1.39530 * 120.08782 * 179.97438 * 2 1 3 9 9 C 1.47853 * 120.13279 * 0.03873 * 8 2 1 10 10 O 1.21552 * 119.99729 * 6.22786 * 9 8 2 11 11 N 1.34773 * 119.99750 * 186.22253 * 9 8 2 12 12 C 1.46501 * 119.99874 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47467 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47189 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46830 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46831 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.46900 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47177 * 180.02562 * 17 16 15 19 19 C 1.36933 * 120.00234 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99958 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00003 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99900 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00093 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46750 * 90.00793 * 23 21 19 25 25 H 1.48498 * 109.47215 * 210.00153 * 23 21 19 26 26 H 1.48496 * 109.47205 * 330.00856 * 23 21 19 27 27 H 1.09001 * 109.47299 * 96.58418 * 1 2 3 28 28 H 1.09003 * 109.47139 * 216.57984 * 1 2 3 29 29 H 1.08998 * 109.47254 * 336.58191 * 1 2 3 30 30 H 1.08002 * 119.86392 * 179.72362 * 5 3 2 31 31 H 1.07996 * 119.91389 * 180.24969 * 6 5 3 32 32 H 1.08005 * 120.04429 * 179.70314 * 7 6 5 33 33 H 0.97001 * 120.00139 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.47082 * 300.00168 * 12 11 9 35 35 H 1.08992 * 109.47209 * 60.00182 * 12 11 9 36 36 H 1.08997 * 109.46785 * 300.00256 * 13 12 11 37 37 H 1.09001 * 109.46984 * 59.99831 * 13 12 11 38 38 H 1.08997 * 109.46787 * 299.99292 * 14 13 12 39 39 H 1.08988 * 109.47057 * 59.99995 * 14 13 12 40 40 H 1.08997 * 109.47018 * 300.00061 * 15 14 13 41 41 H 1.09001 * 109.47111 * 59.99856 * 15 14 13 42 42 H 1.08997 * 109.47687 * 300.00041 * 16 15 14 43 43 H 1.09001 * 109.47073 * 60.00222 * 16 15 14 44 44 H 1.08997 * 109.47302 * 300.00667 * 17 16 15 45 45 H 1.09001 * 109.46758 * 60.00419 * 17 16 15 46 46 H 0.97001 * 119.99986 * 0.02562 * 18 17 16 47 47 H 0.96993 * 119.99870 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1999 1.1959 0.0000 4 9 1.5251 2.3664 -0.0005 5 6 3.5853 1.1961 -0.0053 6 6 4.2828 0.0013 0.0008 7 6 3.6024 -1.1986 0.0007 8 6 2.2064 -1.2073 0.0005 9 6 1.4721 -2.4906 0.0002 10 8 0.2621 -2.4983 -0.1147 11 7 2.1445 -3.6517 0.1273 12 6 1.4169 -4.9233 0.1264 13 6 2.4081 -6.0781 0.2843 14 6 1.6483 -7.4061 0.2827 15 6 2.6395 -8.5610 0.4399 16 6 1.8797 -9.8889 0.4390 17 6 2.8710 -11.0438 0.5956 18 7 2.1435 -12.3154 0.5941 19 6 2.8266 -13.4952 0.7230 20 1 3.9018 -13.4883 0.8254 21 6 2.1373 -14.7001 0.7211 22 7 2.7940 -15.8341 0.8446 23 14 0.2779 -14.7121 0.5433 24 1 -0.0813 -14.7896 -0.8956 25 1 -0.2800 -15.8889 1.2568 26 1 -0.2833 -13.4674 1.1272 27 1 -0.3634 -0.1178 -1.0209 28 1 -0.3633 -0.8253 0.6124 29 1 -0.3634 0.9430 0.4084 30 1 4.1230 2.1327 -0.0098 31 1 5.3627 0.0082 0.0007 32 1 4.1489 -2.1302 0.0007 33 1 3.1101 -3.6454 0.2193 34 1 0.7086 -4.9371 0.9548 35 1 0.8778 -5.0328 -0.8145 36 1 3.1167 -6.0644 -0.5438 37 1 2.9469 -5.9684 1.2254 38 1 0.9395 -7.4201 1.1106 39 1 1.1099 -7.5155 -0.6586 40 1 3.3481 -8.5468 -0.3882 41 1 3.1784 -8.4517 1.3811 42 1 1.1713 -9.9029 1.2673 43 1 1.3406 -9.9984 -0.5020 44 1 3.5791 -11.0297 -0.2330 45 1 3.4105 -10.9345 1.5364 46 1 1.1780 -12.3217 0.5018 47 1 2.3124 -16.6760 0.8428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178543914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:25 Heat of formation + Delta-G solvation = -88.647239 kcal Electronic energy + Delta-G solvation = -25041.293330 eV Core-core repulsion = 21137.020404 eV Total energy + Delta-G solvation = -3904.272926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.99031 -41.43238 -39.28638 -37.96225 -36.89910 -35.45583 -33.83403 -33.64797 -32.44663 -31.29471 -28.70272 -27.94275 -25.82487 -24.72136 -23.51235 -22.67027 -22.21556 -22.10369 -21.42793 -19.62162 -19.15502 -17.80157 -17.15036 -17.10233 -16.82650 -16.79295 -16.70579 -16.55388 -16.27866 -15.79386 -15.43880 -15.02323 -14.88598 -14.49686 -14.34581 -14.26421 -14.13788 -13.91739 -13.50224 -13.44374 -13.26080 -13.03187 -12.98064 -12.87422 -12.65337 -12.45501 -12.32300 -12.07375 -11.87422 -11.84399 -11.79339 -11.50206 -11.32068 -10.97156 -10.78050 -10.30234 -9.92646 -9.72070 -9.30691 -8.04455 -5.38152 -0.35887 0.08209 1.37364 1.41038 1.48707 1.70569 2.03175 2.47634 2.62028 3.19207 3.26921 3.52960 3.60126 3.65271 3.82507 3.91967 3.93188 4.04084 4.20377 4.25998 4.26100 4.31320 4.57238 4.59278 4.60783 4.64144 4.65879 4.78726 4.82754 4.89112 4.98533 4.99780 5.05508 5.06583 5.11910 5.15682 5.21883 5.25647 5.29393 5.36844 5.45349 5.54646 5.57389 5.74124 5.76115 6.20234 6.46745 7.06864 7.13303 7.83978 8.03014 9.17127 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.038366 B = 0.001419 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.645709 B =19729.065159 C =20405.853865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C 0.065 3.935 4 F -0.145 7.145 5 C -0.119 4.119 6 C -0.096 4.096 7 C -0.083 4.083 8 C -0.130 4.130 9 C 0.551 3.449 10 O -0.567 6.567 11 N -0.710 5.710 12 C 0.120 3.880 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.106 4.106 16 C -0.121 4.121 17 C 0.149 3.851 18 N -0.763 5.763 19 C -0.241 4.241 20 H 0.055 0.945 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.959 3.041 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.252 1.252 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.163 0.837 31 H 0.178 0.822 32 H 0.166 0.834 33 H 0.416 0.584 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.022 0.978 46 H 0.366 0.634 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 40.737 -2.074 40.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C 0.046 3.954 4 F -0.124 7.124 5 C -0.137 4.137 6 C -0.113 4.113 7 C -0.101 4.101 8 C -0.133 4.133 9 C 0.340 3.660 10 O -0.448 6.448 11 N -0.362 5.362 12 C -0.003 4.003 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.144 4.144 16 C -0.159 4.159 17 C 0.024 3.976 18 N -0.409 5.409 19 C -0.372 4.372 20 H 0.073 0.927 21 C -0.257 4.257 22 N -0.634 5.634 23 Si 0.786 3.214 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.176 1.176 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.181 0.819 31 H 0.195 0.805 32 H 0.183 0.817 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.040 0.960 46 H 0.199 0.801 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.095 40.626 -2.124 40.736 hybrid contribution -0.901 -0.483 -0.030 1.022 sum 1.195 40.144 -2.154 40.219 Atomic orbital electron populations 1.20905 0.90034 1.03044 1.03317 1.20130 0.97579 0.91560 0.98886 1.17678 0.91123 0.80367 1.06280 1.91476 1.80802 1.45876 1.94213 1.21740 0.91054 1.02064 0.98892 1.21418 1.02369 0.89991 0.97566 1.21755 0.91433 1.00929 0.95992 1.19626 0.94781 0.91609 1.07269 1.18447 0.86782 0.84549 0.76266 1.90743 1.15395 1.87642 1.50977 1.45824 1.11843 1.05151 1.73409 1.21399 0.95246 0.81890 1.01771 1.21712 0.97840 0.92143 1.04012 1.21448 0.98090 0.93081 1.02516 1.21425 0.98066 0.92171 1.02739 1.21706 0.98124 0.94138 1.01937 1.20879 0.94614 0.84215 0.97936 1.42806 1.05590 1.02502 1.89993 1.19097 0.92245 0.84878 1.41020 0.92689 1.25566 1.03055 0.94618 1.02416 1.69892 1.36769 0.97586 1.59195 0.85350 0.80317 0.77661 0.78107 1.20279 1.22032 1.17614 0.91078 0.89739 0.91696 0.81933 0.80484 0.81708 0.74584 0.92263 0.92197 0.89852 0.89937 0.91786 0.91718 0.91239 0.91321 0.92061 0.91921 0.95916 0.96033 0.80108 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.61 71.23 0.61 -1.63 16 2 C -0.08 -1.37 5.92 -19.56 -0.12 -1.48 16 3 C 0.06 0.95 7.24 22.34 0.16 1.11 16 4 F -0.14 -2.49 16.37 44.97 0.74 -1.75 16 5 C -0.12 -0.95 10.02 22.37 0.22 -0.73 16 6 C -0.10 -0.40 10.03 22.23 0.22 -0.18 16 7 C -0.08 -0.53 9.52 22.53 0.21 -0.32 16 8 C -0.13 -1.84 5.87 -20.09 -0.12 -1.96 16 9 C 0.55 9.78 7.70 86.79 0.67 10.45 16 10 O -0.57 -14.46 13.35 -3.88 -0.05 -14.51 16 11 N -0.71 -8.22 5.51 -465.97 -2.57 -10.78 16 12 C 0.12 1.61 5.67 86.38 0.49 2.10 16 13 C -0.12 -1.21 5.33 30.59 0.16 -1.05 16 14 C -0.11 -1.67 5.21 30.60 0.16 -1.51 16 15 C -0.11 -2.01 5.21 30.59 0.16 -1.85 16 16 C -0.12 -3.28 5.33 30.59 0.16 -3.12 16 17 C 0.15 5.62 6.26 86.38 0.54 6.16 16 18 N -0.76 -36.57 5.41 -343.44 -1.86 -38.43 16 19 C -0.24 -14.17 10.47 84.03 0.88 -13.29 16 20 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 21 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 22 N -0.98 -63.88 13.97 21.65 0.30 -63.57 16 23 Si 0.96 45.96 27.74 68.60 1.90 47.86 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.89 5.86 -2.39 -0.01 1.88 16 29 H 0.06 1.13 7.46 -2.39 -0.02 1.11 16 30 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 31 H 0.18 -0.51 8.06 -2.91 -0.02 -0.53 16 32 H 0.17 -0.07 6.45 -2.91 -0.02 -0.09 16 33 H 0.42 1.93 6.55 -92.71 -0.61 1.32 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.37 16.58 5.53 -92.71 -0.51 16.07 16 47 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -78.07 387.13 3.16 -74.91 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -0.20 Total: 17.02 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 4.89 Total: -10.74 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -4.12 Total: -112.79 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.05 Total: -14.51 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.74 Total: -1.75 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.86 kcal Total: -78.07 3.16 -74.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178543914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.741 kcal (2) G-P(sol) polarization free energy of solvation -78.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds