Wall clock time and date at job start Sat Apr 11 2020 00:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35725 * 117.00367 * 2 1 4 4 C 1.39450 * 120.81163 * 179.97438 * 3 2 1 5 5 N 1.31950 * 119.08307 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83887 * 359.97438 * 5 4 3 7 7 C 1.48296 * 119.10976 * 180.02562 * 6 5 4 8 8 O 1.21498 * 120.00325 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99657 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47131 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47294 * 179.97438 * 15 14 13 17 17 C 1.36935 * 120.00627 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99458 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00246 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00349 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99774 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46800 * 120.00141 * 21 19 17 24 24 H 1.48496 * 109.46956 * 239.99914 * 21 19 17 25 25 N 1.32538 * 121.77424 * 0.27563 * 6 5 4 26 26 C 1.31955 * 120.83691 * 359.44678 * 25 6 5 27 27 H 1.09005 * 109.47416 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47753 * 300.00110 * 1 2 3 29 29 H 1.09010 * 109.46985 * 59.99783 * 1 2 3 30 30 H 1.07994 * 120.45378 * 0.02562 * 4 3 2 31 31 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 33 33 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 34 34 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 35 35 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 36 36 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 37 37 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 38 38 H 1.08998 * 109.47076 * 299.99221 * 13 12 11 39 39 H 1.09001 * 109.47502 * 60.00153 * 13 12 11 40 40 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 41 41 H 1.09000 * 109.47380 * 59.99240 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99679 * 15 14 13 43 43 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 44 44 H 0.97006 * 119.99755 * 359.97438 * 16 15 14 45 45 H 0.97000 * 120.00225 * 179.97438 * 20 19 17 46 46 H 1.08000 * 120.45870 * 180.27380 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0000 2.4951 0.0010 6 6 3.2610 3.5954 0.0005 7 6 3.9344 4.9166 0.0005 8 8 5.1477 4.9802 0.0015 9 7 3.2004 6.0470 0.0005 10 6 3.8655 7.3523 0.0011 11 6 2.8118 8.4616 0.0016 12 6 3.5064 9.8248 0.0016 13 6 2.4527 10.9341 0.0015 14 6 3.1474 12.2974 0.0021 15 6 2.0937 13.4067 0.0026 16 7 2.7588 14.7120 0.0038 17 6 2.0131 15.8605 0.0039 18 1 0.9346 15.8040 0.0027 19 6 2.6434 17.0972 0.0056 20 7 3.9577 17.1661 0.0076 21 14 1.6260 18.6640 0.0050 22 1 0.1822 18.3167 0.0020 23 1 1.9418 19.4596 1.2185 24 1 1.9453 19.4611 -1.2065 25 7 1.9366 3.5465 0.0049 26 6 1.3023 2.3894 -0.0009 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0446 0.4094 0.0005 31 1 2.2317 5.9963 0.0002 32 1 4.4880 7.4425 0.8913 33 1 4.4886 7.4430 -0.8886 34 1 2.1890 8.3716 -0.8884 35 1 2.1891 8.3708 0.8916 36 1 4.1295 9.9152 0.8914 37 1 4.1290 9.9154 -0.8886 38 1 1.8301 10.8437 -0.8886 39 1 1.8299 10.8438 0.8914 40 1 3.7698 12.3876 0.8924 41 1 3.7706 12.3881 -0.8876 42 1 1.4710 13.3167 -0.8875 43 1 1.4709 13.3159 0.8926 44 1 3.7275 14.7627 0.0045 45 1 4.3981 18.0304 0.0084 46 1 0.2228 2.3568 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178989016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:36 Heat of formation + Delta-G solvation = -27.757198 kcal Electronic energy + Delta-G solvation = -24734.313832 eV Core-core repulsion = 20852.601258 eV Total energy + Delta-G solvation = -3881.712574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07045 -40.01461 -38.99756 -36.81648 -35.47755 -34.62323 -33.85828 -32.23197 -31.63643 -29.97847 -28.62991 -27.09047 -25.53451 -24.96032 -23.83304 -22.31223 -21.55600 -20.91391 -20.62482 -19.10408 -18.81640 -18.57174 -16.95675 -16.94035 -16.28817 -16.20472 -15.87363 -15.62536 -15.32017 -14.79900 -14.64016 -14.41538 -14.13122 -14.02251 -13.46006 -13.36762 -13.16998 -12.92188 -12.69972 -12.39101 -12.32858 -12.15840 -11.70130 -11.67283 -11.33749 -11.17928 -10.90047 -10.71479 -10.70910 -10.52187 -10.31243 -10.22640 -9.97198 -9.91853 -9.62226 -9.55329 -9.33938 -8.82714 -6.86247 -5.71958 -3.00248 -0.13227 0.28640 2.14884 2.18100 2.45504 3.25989 3.27885 3.44214 3.46107 3.51252 3.53912 3.78604 3.95172 4.30121 4.32864 4.43912 4.56273 4.66383 4.71602 4.78509 4.91711 4.99322 5.25959 5.26514 5.40087 5.42820 5.58438 5.66473 5.72801 5.75548 5.96042 5.96546 5.99649 6.08518 6.17263 6.30023 6.37588 6.37937 6.44719 6.52204 6.95122 6.95800 6.99106 7.32512 7.74500 7.79194 8.47463 9.58153 10.18105 10.52562 11.51284 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.035362 B = 0.001311 C = 0.001267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.630142 B =21346.668485 C =22091.339086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.297 6.297 3 C 0.046 3.954 4 C 0.124 3.876 5 N -0.427 5.427 6 C 0.241 3.759 7 C 0.586 3.414 8 O -0.505 6.505 9 N -0.708 5.708 10 C 0.117 3.883 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.113 4.113 14 C -0.127 4.127 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 N -0.456 5.456 26 C 0.064 3.936 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.186 0.814 31 H 0.411 0.589 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 -40.060 -0.033 40.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.206 6.206 3 C -0.006 4.006 4 C -0.045 4.045 5 N -0.141 5.141 6 C -0.028 4.028 7 C 0.367 3.633 8 O -0.376 6.376 9 N -0.361 5.361 10 C -0.006 4.006 11 C -0.169 4.169 12 C -0.154 4.154 13 C -0.151 4.151 14 C -0.165 4.165 15 C 0.024 3.976 16 N -0.379 5.379 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 N -0.173 5.173 26 C -0.104 4.104 27 H 0.129 0.871 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.203 0.797 31 H 0.247 0.753 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.735 -39.172 -0.024 39.747 hybrid contribution -1.495 0.078 -0.002 1.497 sum -8.230 -39.093 -0.026 39.950 Atomic orbital electron populations 1.23306 0.77004 1.05343 1.02091 1.86109 1.22464 1.24760 1.87308 1.21259 0.95268 0.86985 0.97080 1.22940 0.89329 0.96328 0.95913 1.68276 1.39784 0.97579 1.08488 1.22738 0.86073 0.94325 0.99669 1.17079 0.86270 0.81910 0.78042 1.90843 1.12679 1.86222 1.47902 1.45814 1.11090 1.05201 1.74032 1.21566 0.95785 0.80184 1.03040 1.21830 0.97930 0.94115 1.02985 1.21519 0.98549 0.92643 1.02718 1.21499 0.97703 0.94015 1.01917 1.21732 0.98991 0.93732 1.02016 1.20660 0.93856 0.85533 0.97518 1.42407 1.06137 0.99960 1.89435 1.19308 0.90681 0.84695 1.42261 0.91173 1.24745 0.95627 0.97589 1.03210 1.69673 1.06825 1.23759 1.58079 0.86115 0.79129 0.83789 0.77177 1.20571 1.21876 1.21882 1.68112 1.10192 1.29206 1.09820 1.23467 1.01436 0.86570 0.98901 0.87091 0.91802 0.91807 0.79713 0.75324 0.90874 0.90867 0.91123 0.91116 0.91546 0.91549 0.92082 0.92087 0.92078 0.92074 0.96591 0.96596 0.78333 0.93601 0.80401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.84 101.05 0.99 1.00 16 2 O -0.30 -1.20 10.51 -18.88 -0.20 -1.39 16 3 C 0.05 0.25 6.75 -38.68 -0.26 -0.01 16 4 C 0.12 0.85 11.28 -17.05 -0.19 0.66 16 5 N -0.43 -4.45 10.11 -11.03 -0.11 -4.57 16 6 C 0.24 2.51 7.59 -157.05 -1.19 1.32 16 7 C 0.59 6.95 7.84 -12.12 -0.10 6.85 16 8 O -0.50 -7.75 16.86 5.37 0.09 -7.66 16 9 N -0.71 -6.50 5.54 -61.10 -0.34 -6.84 16 10 C 0.12 1.07 5.67 -4.04 -0.02 1.04 16 11 C -0.13 -1.06 5.33 -26.73 -0.14 -1.21 16 12 C -0.12 -1.17 5.21 -26.73 -0.14 -1.31 16 13 C -0.11 -1.39 5.21 -26.73 -0.14 -1.53 16 14 C -0.13 -2.08 5.33 -26.73 -0.14 -2.22 16 15 C 0.15 3.17 6.26 -4.05 -0.03 3.14 16 16 N -0.74 -19.51 5.60 -59.91 -0.34 -19.84 16 17 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 18 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 21 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 N -0.46 -3.66 9.55 -11.03 -0.11 -3.77 16 26 C 0.06 0.34 10.31 -17.05 -0.18 0.17 16 27 H 0.11 -0.12 8.14 -51.93 -0.42 -0.54 16 28 H 0.06 -0.03 7.71 -51.93 -0.40 -0.43 16 29 H 0.06 -0.03 7.71 -51.92 -0.40 -0.43 16 30 H 0.19 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.41 3.00 7.77 -40.82 -0.32 2.68 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 45 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.18 0.31 6.47 -52.49 -0.34 -0.02 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -36.64 391.59 -8.41 -45.05 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.23 Total: 3.32 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.78 Total: 0.27 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.17 Total: -63.31 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.11 Total: -9.05 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.64 -8.41 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178989016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.294 kcal (2) G-P(sol) polarization free energy of solvation -36.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds