Wall clock time and date at job start Sat Apr 11 2020 00:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35725 * 117.00367 * 2 1 4 4 C 1.39450 * 120.81163 * 179.97438 * 3 2 1 5 5 N 1.31950 * 119.08307 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83887 * 359.97438 * 5 4 3 7 7 C 1.48296 * 119.10976 * 180.02562 * 6 5 4 8 8 O 1.21498 * 120.00325 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99657 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47131 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47294 * 179.97438 * 15 14 13 17 17 C 1.36935 * 120.00627 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99458 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00246 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00349 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99774 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46800 * 120.00141 * 21 19 17 24 24 H 1.48496 * 109.46956 * 239.99914 * 21 19 17 25 25 N 1.32538 * 121.77424 * 0.27563 * 6 5 4 26 26 C 1.31955 * 120.83691 * 359.44678 * 25 6 5 27 27 H 1.09005 * 109.47416 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47753 * 300.00110 * 1 2 3 29 29 H 1.09010 * 109.46985 * 59.99783 * 1 2 3 30 30 H 1.07994 * 120.45378 * 0.02562 * 4 3 2 31 31 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 33 33 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 34 34 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 35 35 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 36 36 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 37 37 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 38 38 H 1.08998 * 109.47076 * 299.99221 * 13 12 11 39 39 H 1.09001 * 109.47502 * 60.00153 * 13 12 11 40 40 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 41 41 H 1.09000 * 109.47380 * 59.99240 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99679 * 15 14 13 43 43 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 44 44 H 0.97006 * 119.99755 * 359.97438 * 16 15 14 45 45 H 0.97000 * 120.00225 * 179.97438 * 20 19 17 46 46 H 1.08000 * 120.45870 * 180.27380 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0000 2.4951 0.0010 6 6 3.2610 3.5954 0.0005 7 6 3.9344 4.9166 0.0005 8 8 5.1477 4.9802 0.0015 9 7 3.2004 6.0470 0.0005 10 6 3.8655 7.3523 0.0011 11 6 2.8118 8.4616 0.0016 12 6 3.5064 9.8248 0.0016 13 6 2.4527 10.9341 0.0015 14 6 3.1474 12.2974 0.0021 15 6 2.0937 13.4067 0.0026 16 7 2.7588 14.7120 0.0038 17 6 2.0131 15.8605 0.0039 18 1 0.9346 15.8040 0.0027 19 6 2.6434 17.0972 0.0056 20 7 3.9577 17.1661 0.0076 21 14 1.6260 18.6640 0.0050 22 1 0.1822 18.3167 0.0020 23 1 1.9418 19.4596 1.2185 24 1 1.9453 19.4611 -1.2065 25 7 1.9366 3.5465 0.0049 26 6 1.3023 2.3894 -0.0009 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0446 0.4094 0.0005 31 1 2.2317 5.9963 0.0002 32 1 4.4880 7.4425 0.8913 33 1 4.4886 7.4430 -0.8886 34 1 2.1890 8.3716 -0.8884 35 1 2.1891 8.3708 0.8916 36 1 4.1295 9.9152 0.8914 37 1 4.1290 9.9154 -0.8886 38 1 1.8301 10.8437 -0.8886 39 1 1.8299 10.8438 0.8914 40 1 3.7698 12.3876 0.8924 41 1 3.7706 12.3881 -0.8876 42 1 1.4710 13.3167 -0.8875 43 1 1.4709 13.3159 0.8926 44 1 3.7275 14.7627 0.0045 45 1 4.3981 18.0304 0.0084 46 1 0.2228 2.3568 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178989016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:35 Heat of formation + Delta-G solvation = -54.835140 kcal Electronic energy + Delta-G solvation = -24735.488020 eV Core-core repulsion = 20852.601258 eV Total energy + Delta-G solvation = -3882.886762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.59437 -40.70448 -39.49070 -37.90426 -36.80695 -35.53203 -34.95667 -33.54941 -32.51951 -31.39992 -28.99477 -28.20901 -26.33751 -25.75725 -25.07000 -23.61845 -22.34375 -22.10997 -21.71943 -19.61716 -19.28936 -19.17016 -19.04305 -17.35965 -17.01952 -17.01804 -16.67443 -16.44529 -16.40381 -15.67812 -15.65307 -15.37996 -15.23870 -14.91955 -14.91200 -14.65761 -14.03349 -13.90294 -13.50418 -13.41521 -13.03918 -12.95944 -12.67502 -12.56765 -12.48771 -12.37965 -12.24955 -12.12174 -12.00581 -11.80131 -11.78090 -11.55692 -11.31759 -11.22454 -10.93921 -10.51463 -10.27342 -9.85984 -9.00796 -7.95997 -5.25529 -0.70910 -0.17952 1.44892 1.47046 1.48589 1.58887 1.63013 1.98542 2.55982 2.62347 2.74414 3.02265 3.24341 3.37698 3.60159 3.72795 3.85193 4.03248 4.03698 4.26314 4.29509 4.31046 4.35291 4.38323 4.54366 4.61101 4.64744 4.76431 4.79109 4.83896 4.87472 4.98983 4.99714 5.08492 5.16468 5.28525 5.30701 5.40292 5.48871 5.52505 5.56047 5.59048 5.95415 6.25335 6.26931 6.72775 7.01299 7.32238 8.09603 8.32356 9.28127 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.035362 B = 0.001311 C = 0.001267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.630142 B =21346.668485 C =22091.339086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.302 6.302 3 C 0.065 3.935 4 C 0.110 3.890 5 N -0.461 5.461 6 C 0.213 3.787 7 C 0.581 3.419 8 O -0.553 6.553 9 N -0.693 5.693 10 C 0.118 3.882 11 C -0.117 4.117 12 C -0.113 4.113 13 C -0.104 4.104 14 C -0.117 4.117 15 C 0.148 3.852 16 N -0.752 5.752 17 C -0.249 4.249 18 H 0.076 0.924 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.977 3.023 22 H -0.264 1.264 23 H -0.292 1.292 24 H -0.292 1.292 25 N -0.457 5.457 26 C 0.065 3.935 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.206 0.794 31 H 0.421 0.579 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 -41.699 -0.037 43.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.211 6.211 3 C 0.012 3.988 4 C -0.059 4.059 5 N -0.176 5.176 6 C -0.055 4.055 7 C 0.364 3.636 8 O -0.429 6.429 9 N -0.346 5.346 10 C -0.005 4.005 11 C -0.155 4.155 12 C -0.151 4.151 13 C -0.142 4.142 14 C -0.155 4.155 15 C 0.021 3.979 16 N -0.394 5.394 17 C -0.381 4.381 18 H 0.094 0.906 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.805 3.195 22 H -0.189 1.189 23 H -0.219 1.219 24 H -0.219 1.219 25 N -0.174 5.174 26 C -0.103 4.103 27 H 0.146 0.854 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.223 0.777 31 H 0.259 0.741 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.204 0.796 45 H 0.061 0.939 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.810 -40.852 -0.029 42.013 hybrid contribution -0.704 0.394 0.000 0.807 sum -10.514 -40.458 -0.029 41.802 Atomic orbital electron populations 1.23687 0.74797 1.07033 1.03484 1.86126 1.24674 1.23847 1.86453 1.21216 0.94847 0.87709 0.94999 1.23297 0.90671 0.95904 0.96013 1.68189 1.41149 0.98662 1.09644 1.22366 0.87012 0.93621 1.02496 1.17428 0.85908 0.83054 0.77215 1.90798 1.14626 1.87048 1.50453 1.45723 1.11505 1.04649 1.72759 1.21524 0.96081 0.80553 1.02300 1.21696 0.97421 0.92194 1.04183 1.21448 0.98041 0.92992 1.02626 1.21417 0.98004 0.91969 1.02775 1.21643 0.97869 0.94592 1.01405 1.20885 0.94944 0.84557 0.97475 1.42682 1.05767 1.01514 1.89443 1.19737 0.91256 0.85864 1.41257 0.90571 1.25632 0.96795 1.00972 1.03584 1.69834 1.08561 1.24284 1.59571 0.85023 0.78327 0.79352 0.76757 1.18872 1.21872 1.21882 1.68095 1.08985 1.30466 1.09845 1.24097 1.03000 0.85642 0.97562 0.85445 0.90371 0.90367 0.77716 0.74061 0.91715 0.91702 0.89899 0.89897 0.91755 0.91753 0.91207 0.91219 0.92729 0.92719 0.96257 0.96267 0.79592 0.93949 0.76618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.84 113.37 1.12 1.11 16 2 O -0.30 -1.64 10.51 -90.47 -0.95 -2.59 16 3 C 0.06 0.58 6.75 22.85 0.15 0.74 16 4 C 0.11 1.45 11.28 84.97 0.96 2.41 16 5 N -0.46 -9.93 10.11 -188.81 -1.91 -11.84 16 6 C 0.21 4.51 7.59 137.56 1.04 5.55 16 7 C 0.58 14.33 7.84 86.92 0.68 15.01 16 8 O -0.55 -18.08 16.86 -3.71 -0.06 -18.15 16 9 N -0.69 -12.55 5.54 -465.53 -2.58 -15.13 16 10 C 0.12 2.11 5.67 86.38 0.49 2.61 16 11 C -0.12 -1.68 5.33 30.59 0.16 -1.52 16 12 C -0.11 -2.12 5.21 30.59 0.16 -1.96 16 13 C -0.10 -2.35 5.21 30.60 0.16 -2.19 16 14 C -0.12 -3.76 5.33 30.60 0.16 -3.60 16 15 C 0.15 6.07 6.26 86.38 0.54 6.61 16 16 N -0.75 -40.12 5.60 -343.46 -1.92 -42.05 16 17 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 18 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 21 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 22 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 N -0.46 -6.79 9.55 -188.81 -1.80 -8.59 16 26 C 0.07 0.54 10.31 84.97 0.88 1.41 16 27 H 0.13 -0.69 8.14 -2.38 -0.02 -0.71 16 28 H 0.08 -0.37 7.71 -2.39 -0.02 -0.39 16 29 H 0.08 -0.37 7.71 -2.38 -0.02 -0.39 16 30 H 0.21 1.52 8.06 -2.91 -0.02 1.49 16 31 H 0.42 5.65 7.77 -92.71 -0.72 4.93 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.37 21.09 7.67 -92.70 -0.71 20.38 16 45 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 46 H 0.22 -0.09 6.47 -2.91 -0.02 -0.11 16 Total: -1.00 -80.93 391.59 0.45 -80.47 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.44 Total: 21.31 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 7.81 Total: 8.44 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -7.94 Total: -138.45 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -1.01 Total: -20.73 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -80.93 0.45 -80.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178989016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.636 kcal (2) G-P(sol) polarization free energy of solvation -80.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds