Wall clock time and date at job start Sat Apr 11 2020 00:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37850 * 119.94263 * 2 1 4 4 C 1.39634 * 119.87968 * 179.97438 * 3 2 1 5 5 C 1.47730 * 120.11573 * 179.97438 * 4 3 2 6 6 O 1.21567 * 120.00063 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99759 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00250 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47693 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.47408 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46879 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46879 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47408 * 180.02562 * 12 11 10 14 14 N 1.46494 * 109.47161 * 180.02562 * 13 12 11 15 15 C 1.36937 * 119.99828 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99966 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99996 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00065 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99958 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46917 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47160 * 119.99884 * 19 17 15 22 22 H 1.48497 * 109.46829 * 239.99746 * 19 17 15 23 23 C 1.39664 * 119.76563 * 0.02562 * 4 3 2 24 24 C 1.37816 * 119.87705 * 359.97438 * 23 4 3 25 25 C 1.38635 * 119.93923 * 179.97438 * 2 1 3 26 26 F 1.35100 * 119.88184 * 359.72444 * 25 2 1 27 27 H 1.09000 * 109.47131 * 270.02228 * 1 2 3 28 28 H 1.09003 * 109.47489 * 30.01920 * 1 2 3 29 29 H 1.09001 * 109.47270 * 150.01929 * 1 2 3 30 30 H 1.08000 * 120.05734 * 359.97438 * 3 2 1 31 31 H 0.97003 * 120.00535 * 0.02562 * 7 5 4 32 32 H 1.09002 * 109.47565 * 300.00751 * 8 7 5 33 33 H 1.09006 * 109.46539 * 60.00445 * 8 7 5 34 34 H 1.08996 * 109.46900 * 300.00555 * 9 8 7 35 35 H 1.08998 * 109.46987 * 60.00269 * 9 8 7 36 36 H 1.08995 * 109.46779 * 300.00220 * 10 9 8 37 37 H 1.09006 * 109.46972 * 60.00272 * 10 9 8 38 38 H 1.08995 * 109.47600 * 299.99724 * 11 10 9 39 39 H 1.09000 * 109.46828 * 60.00715 * 11 10 9 40 40 H 1.09002 * 109.47417 * 300.00409 * 12 11 10 41 41 H 1.08998 * 109.47118 * 59.99999 * 12 11 10 42 42 H 1.09002 * 109.47161 * 300.00560 * 13 12 11 43 43 H 1.09006 * 109.46832 * 60.00187 * 13 12 11 44 44 H 0.96993 * 120.00342 * 359.97438 * 14 13 12 45 45 H 0.96998 * 119.99769 * 180.02562 * 18 17 15 46 46 H 1.08003 * 120.06077 * 180.02562 * 23 4 3 47 47 H 1.08001 * 119.94058 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1945 0.0000 4 6 3.5914 1.1930 0.0005 5 6 4.3340 2.4700 0.0000 6 8 3.7295 3.5247 -0.0005 7 7 5.6817 2.4658 0.0000 8 6 6.4183 3.7321 -0.0012 9 6 7.9216 3.4479 -0.0015 10 6 8.6908 4.7705 -0.0021 11 6 10.1941 4.4861 -0.0018 12 6 10.9633 5.8088 -0.0030 13 6 12.4666 5.5245 -0.0034 14 7 13.2031 6.7909 -0.0039 15 6 14.5724 6.7866 -0.0049 16 1 15.1095 5.8496 -0.0048 17 6 15.2703 7.9866 -0.0048 18 7 14.6158 9.1285 -0.0044 19 14 17.1383 7.9807 -0.0054 20 1 17.6288 6.5791 -0.0052 21 1 17.6351 8.6794 -1.2179 22 1 17.6358 8.6790 1.2071 23 6 4.2834 -0.0202 0.0005 24 6 3.5856 -1.2086 0.0005 25 6 2.1989 -1.2013 0.0005 26 9 1.5197 -2.3692 0.0067 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6550 2.1298 -0.0004 31 1 6.1641 1.6242 0.0000 32 1 6.1567 4.3039 -0.8916 33 1 6.1567 4.3053 0.8884 34 1 8.1834 2.8760 0.8886 35 1 8.1828 2.8750 -0.8913 36 1 8.4289 5.3427 -0.8921 37 1 8.4295 5.3431 0.8879 38 1 10.4556 3.9142 0.8884 39 1 10.4556 3.9134 -0.8916 40 1 10.7018 6.3805 -0.8935 41 1 10.7018 6.3819 0.8864 42 1 12.7285 4.9526 0.8868 43 1 12.7278 4.9515 -0.8932 44 1 12.7208 7.6324 -0.0043 45 1 15.1034 9.9670 -0.0047 46 1 5.3634 -0.0269 0.0014 47 1 4.1197 -2.1473 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179426147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:50 Heat of formation + Delta-G solvation = -77.779899 kcal Electronic energy + Delta-G solvation = -24661.254050 eV Core-core repulsion = 20757.452367 eV Total energy + Delta-G solvation = -3903.801683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.53215 -40.68413 -38.85043 -36.85995 -35.48853 -34.16837 -33.48384 -32.01750 -31.32210 -29.93411 -27.74882 -26.92403 -24.70427 -23.55267 -22.88546 -22.24819 -21.32734 -20.67007 -20.42865 -18.37702 -17.83208 -17.22961 -16.97001 -16.37802 -16.23900 -16.00105 -15.34719 -15.21416 -14.67897 -14.44503 -14.37213 -14.13063 -13.92222 -13.81313 -13.48800 -13.42892 -13.25565 -13.03042 -12.75451 -12.55949 -12.39903 -12.37542 -11.74817 -11.64935 -11.38261 -11.20973 -10.93665 -10.75356 -10.73438 -10.49561 -10.30078 -10.26804 -9.93988 -9.64371 -9.63353 -9.52803 -9.22202 -8.84744 -6.88492 -5.73982 -3.02362 0.09747 0.56118 2.25001 2.68599 3.17123 3.44661 3.49876 3.52488 3.55191 3.97973 4.09796 4.16005 4.44943 4.51251 4.57632 4.63281 4.71661 4.87448 4.93498 5.03083 5.08000 5.20887 5.29324 5.34356 5.36915 5.43255 5.46012 5.54898 5.56781 5.62457 5.64249 5.67754 5.71862 5.91931 5.94345 6.02451 6.12215 6.16800 6.33026 6.33812 6.41524 6.48402 6.91841 6.95853 7.03730 7.72571 7.76073 8.45427 9.56159 10.15844 10.50279 11.49233 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.043591 B = 0.001290 C = 0.001256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.180909 B =21698.220147 C =22293.442824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.126 4.126 3 C -0.033 4.033 4 C -0.141 4.141 5 C 0.558 3.442 6 O -0.534 6.534 7 N -0.725 5.725 8 C 0.117 3.883 9 C -0.131 4.131 10 C -0.116 4.116 11 C -0.113 4.113 12 C -0.127 4.127 13 C 0.152 3.848 14 N -0.735 5.735 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.064 4.064 24 C -0.156 4.156 25 C 0.120 3.880 26 F -0.133 7.133 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.400 0.600 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.137 0.863 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.661 -23.444 0.024 37.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.127 4.127 3 C -0.052 4.052 4 C -0.144 4.144 5 C 0.345 3.655 6 O -0.411 6.411 7 N -0.376 5.376 8 C -0.006 4.006 9 C -0.169 4.169 10 C -0.154 4.154 11 C -0.151 4.151 12 C -0.165 4.165 13 C 0.024 3.976 14 N -0.379 5.379 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.082 4.082 24 C -0.174 4.174 25 C 0.101 3.899 26 F -0.111 7.111 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.165 0.835 31 H 0.235 0.765 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.155 0.845 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -29.928 -22.769 0.024 37.605 hybrid contribution 1.157 -0.347 0.003 1.208 sum -28.770 -23.117 0.027 36.907 Atomic orbital electron populations 1.20768 0.89439 1.03784 1.03257 1.19948 0.97595 0.91487 1.03661 1.21073 0.92556 0.97950 0.93597 1.20015 0.94375 0.93186 1.06819 1.18134 0.82181 0.88638 0.76574 1.90807 1.68412 1.32442 1.49462 1.45961 1.06045 1.10355 1.75280 1.21509 0.91120 0.85104 1.02896 1.21838 0.92787 0.99497 1.02803 1.21518 0.95272 0.95943 1.02705 1.21499 0.93509 0.98228 1.01897 1.21731 0.96116 0.96610 1.02018 1.20658 0.89386 0.89993 0.97521 1.42402 1.03503 1.02584 1.89447 1.19308 0.82821 0.92544 1.42324 0.91166 1.24750 0.97940 0.95298 1.03170 1.69674 1.34078 0.96531 1.58040 0.86112 0.85668 0.77222 0.77188 1.20561 1.21863 1.21868 1.21154 1.00164 0.90784 0.96127 1.21084 0.92131 0.99972 1.04239 1.17813 0.90044 0.81077 1.01003 1.91514 1.80130 1.46027 1.93426 0.90414 0.90460 0.90911 0.83505 0.76485 0.91060 0.91052 0.91221 0.91216 0.91568 0.91571 0.92090 0.92098 0.92079 0.92075 0.96597 0.96597 0.78335 0.93592 0.84496 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 9.83 36.00 0.35 -0.18 16 2 C -0.13 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.03 -0.24 9.24 -39.20 -0.36 -0.60 16 4 C -0.14 -1.05 5.87 -104.97 -0.62 -1.66 16 5 C 0.56 5.29 7.77 -12.38 -0.10 5.19 16 6 O -0.53 -7.09 16.34 5.31 0.09 -7.00 16 7 N -0.72 -5.22 5.51 -61.29 -0.34 -5.56 16 8 C 0.12 0.95 5.67 -4.04 -0.02 0.93 16 9 C -0.13 -0.96 5.33 -26.73 -0.14 -1.10 16 10 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 11 C -0.11 -1.34 5.21 -26.73 -0.14 -1.48 16 12 C -0.13 -2.04 5.33 -26.73 -0.14 -2.18 16 13 C 0.15 3.13 6.26 -4.05 -0.03 3.10 16 14 N -0.74 -19.33 5.60 -59.91 -0.34 -19.67 16 15 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 16 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 19 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 C -0.06 -0.33 9.54 -39.20 -0.37 -0.70 16 24 C -0.16 -0.82 10.01 -39.58 -0.40 -1.22 16 25 C 0.12 0.80 7.25 -39.27 -0.28 0.51 16 26 F -0.13 -0.96 16.46 2.25 0.04 -0.92 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 29 H 0.07 0.32 7.63 -51.93 -0.40 -0.07 16 30 H 0.15 1.07 7.65 -52.49 -0.40 0.66 16 31 H 0.40 1.73 6.50 -40.82 -0.27 1.46 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.14 0.33 6.40 -52.48 -0.34 -0.01 16 47 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -34.41 395.72 -9.73 -44.14 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.60 Total: 3.14 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -3.25 Total: -9.67 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.05 Total: -53.34 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: 0.09 Total: -7.00 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.92 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.41 -9.73 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179426147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.636 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds