Wall clock time and date at job start Sat Apr 11 2020 00:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00259 * 2 1 4 4 H 1.48492 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47034 * 300.00719 * 3 2 1 6 6 H 1.48504 * 109.47102 * 60.00249 * 3 2 1 7 7 C 1.38815 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99445 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00382 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00428 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47398 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46898 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46898 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47262 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47262 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47017 * 180.02562 * 15 14 13 17 17 C 1.34784 * 119.99814 * 179.97438 * 16 15 14 18 18 O 1.21274 * 120.00158 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.99782 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.47384 * 14.99997 * 19 17 16 21 21 F 1.39899 * 109.47240 * 254.99893 * 19 17 16 22 22 C 1.50703 * 109.47336 * 134.99830 * 19 17 16 23 23 C 1.38235 * 120.00292 * 245.00097 * 22 19 17 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 19 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 64.97390 * 22 19 17 28 28 H 0.97005 * 119.99925 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99669 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47187 * 59.99927 * 10 9 7 31 31 H 1.09002 * 109.46802 * 300.00691 * 10 9 7 32 32 H 1.08994 * 109.46958 * 59.99830 * 11 10 9 33 33 H 1.08998 * 109.47000 * 299.99669 * 11 10 9 34 34 H 1.08994 * 109.47472 * 60.00124 * 12 11 10 35 35 H 1.08998 * 109.47007 * 299.99643 * 12 11 10 36 36 H 1.09001 * 109.47316 * 59.99612 * 13 12 11 37 37 H 1.09002 * 109.47404 * 299.99928 * 13 12 11 38 38 H 1.09001 * 109.47223 * 59.99615 * 14 13 12 39 39 H 1.08998 * 109.46874 * 299.99784 * 14 13 12 40 40 H 1.09001 * 109.47316 * 59.99671 * 15 14 13 41 41 H 1.08998 * 109.47000 * 299.99707 * 15 14 13 42 42 H 0.96994 * 120.00478 * 359.97438 * 16 15 14 43 43 H 1.08001 * 119.99730 * 359.97438 * 23 22 19 44 44 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 46 46 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 47 47 H 1.07997 * 120.00455 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 6 1.8287 -6.1448 -0.0005 13 6 0.8344 -7.3076 -0.0018 14 6 1.5993 -8.6327 -0.0018 15 6 0.6050 -9.7956 -0.0025 16 7 1.3375 -11.0643 -0.0019 17 6 0.6635 -12.2315 -0.0017 18 8 -0.5492 -12.2315 -0.0017 19 6 1.4170 -13.5366 -0.0017 20 1 2.4583 -13.3550 0.2642 21 9 1.3544 -14.1113 -1.2757 22 6 0.7982 -14.4739 1.0031 23 6 1.5206 -14.8737 2.1118 24 6 0.9527 -15.7330 3.0337 25 6 -0.3379 -16.1920 2.8474 26 6 -1.0607 -15.7911 1.7394 27 6 -0.4921 -14.9335 0.8162 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.6846 -3.7147 0.8894 31 1 2.6847 -3.7145 -0.8905 32 1 0.4374 -4.7617 -0.8913 33 1 0.4367 -4.7622 0.8886 34 1 2.4546 -6.2025 0.8898 35 1 2.4559 -6.2026 -0.8901 36 1 0.2087 -7.2497 -0.8925 37 1 0.2067 -7.2501 0.8875 38 1 2.2253 -8.6909 0.8886 39 1 2.2266 -8.6900 -0.8914 40 1 -0.0213 -9.7376 -0.8927 41 1 -0.0219 -9.7380 0.8873 42 1 2.3074 -11.0644 -0.0015 43 1 2.5286 -14.5145 2.2577 44 1 1.5172 -16.0457 3.8997 45 1 -0.7800 -16.8669 3.5653 46 1 -2.0689 -16.1500 1.5935 47 1 -1.0565 -14.6212 -0.0499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179696004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:07 Heat of formation + Delta-G solvation = -95.232296 kcal Electronic energy + Delta-G solvation = -24949.051115 eV Core-core repulsion = 21044.492639 eV Total energy + Delta-G solvation = -3904.558475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.05610 -40.96247 -39.80758 -37.92784 -36.80839 -35.38331 -33.72680 -33.29460 -31.85469 -31.58209 -29.08295 -27.62835 -25.68851 -23.87086 -23.60886 -22.84888 -22.27180 -21.97850 -21.34976 -19.13589 -18.73822 -18.29339 -17.81288 -17.13070 -16.86177 -16.69736 -16.49497 -16.09157 -15.70868 -15.49342 -15.38562 -15.29747 -15.16076 -14.95599 -14.34802 -14.04570 -13.93941 -13.79463 -13.62153 -13.43855 -13.14338 -13.02464 -12.96830 -12.67771 -12.40504 -12.12904 -12.09496 -12.01478 -11.94155 -11.82209 -11.79933 -11.47593 -11.34504 -10.96501 -10.94938 -10.25587 -9.88522 -9.87004 -9.01929 -7.97029 -5.26588 0.20187 0.44542 1.27518 1.46629 1.48071 1.58412 1.86579 2.55260 2.78023 3.23942 3.36703 3.42678 3.58810 3.71507 3.95480 4.00693 4.01648 4.11053 4.19680 4.24037 4.26300 4.28466 4.33307 4.54510 4.58111 4.62753 4.66506 4.77224 4.83408 4.93569 4.97085 4.97672 5.06508 5.09354 5.14625 5.26807 5.28473 5.38100 5.45638 5.47687 5.50903 5.53732 5.55887 5.56716 6.00907 6.25876 6.32283 6.99036 7.31194 8.08481 8.31070 9.27042 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033995 B = 0.001350 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.449271 B =20733.901420 C =20865.851270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.077 0.923 9 N -0.752 5.752 10 C 0.148 3.852 11 C -0.118 4.118 12 C -0.103 4.103 13 C -0.114 4.114 14 C -0.117 4.117 15 C 0.118 3.882 16 N -0.704 5.704 17 C 0.488 3.512 18 O -0.560 6.560 19 C 0.131 3.869 20 H 0.154 0.846 21 F -0.197 7.197 22 C -0.148 4.148 23 C -0.096 4.096 24 C -0.131 4.131 25 C -0.110 4.110 26 C -0.140 4.140 27 C -0.097 4.097 28 H 0.252 0.748 29 H 0.372 0.628 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.421 0.579 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.134 0.866 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 -37.789 4.796 38.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.095 0.905 9 N -0.394 5.394 10 C 0.021 3.979 11 C -0.155 4.155 12 C -0.141 4.141 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.356 5.356 17 C 0.272 3.728 18 O -0.438 6.438 19 C 0.092 3.908 20 H 0.172 0.828 21 F -0.178 7.178 22 C -0.149 4.149 23 C -0.114 4.114 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.158 4.158 27 C -0.115 4.115 28 H 0.060 0.940 29 H 0.204 0.796 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.260 0.740 43 H 0.176 0.824 44 H 0.172 0.828 45 H 0.165 0.835 46 H 0.152 0.848 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.960 -37.690 4.750 38.453 hybrid contribution -0.254 1.249 -0.375 1.329 sum 5.706 -36.441 4.375 37.143 Atomic orbital electron populations 1.69839 1.06751 1.26097 1.59555 1.25644 0.96470 1.01345 1.03578 0.85015 0.78239 0.79403 0.76752 1.18852 1.21906 1.21866 1.19740 0.91616 0.85504 1.41272 0.90537 1.42684 1.05701 1.01593 1.89454 1.20886 0.94432 0.85031 0.97502 1.21645 0.98102 0.94472 1.01330 1.21413 0.97908 0.91968 1.02826 1.21454 0.98115 0.93281 1.02391 1.21700 0.97678 0.91788 1.04320 1.21423 0.95284 0.82116 1.01734 1.45945 1.11547 1.04897 1.73250 1.21226 0.88279 0.86669 0.76612 1.90727 1.15668 1.87864 1.49554 1.20459 1.03010 0.88364 0.78925 0.82817 1.92896 1.97929 1.85630 1.41312 1.19918 0.95948 1.01143 0.97918 1.21370 1.00784 0.96777 0.92469 1.21536 0.95690 0.97559 1.00036 1.21628 0.94955 0.99057 0.97163 1.21413 1.01026 0.98291 0.95055 1.21140 0.94811 0.96160 0.99402 0.93955 0.79610 0.96194 0.96271 0.92844 0.92769 0.91072 0.91209 0.92092 0.91932 0.89538 0.89814 0.92491 0.92186 0.74048 0.82369 0.82840 0.83541 0.84812 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 3 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 9 N -0.75 -39.80 5.60 -343.45 -1.92 -41.72 16 10 C 0.15 5.98 6.26 86.38 0.54 6.52 16 11 C -0.12 -3.70 5.33 30.59 0.16 -3.53 16 12 C -0.10 -2.23 5.21 30.59 0.16 -2.07 16 13 C -0.11 -2.01 5.21 30.59 0.16 -1.85 16 14 C -0.12 -1.40 5.33 30.59 0.16 -1.24 16 15 C 0.12 1.79 5.67 86.38 0.49 2.28 16 16 N -0.70 -8.66 5.56 -463.07 -2.57 -11.23 16 17 C 0.49 8.93 7.16 87.65 0.63 9.56 16 18 O -0.56 -15.53 15.19 -3.01 -0.05 -15.57 16 19 C 0.13 1.75 4.01 29.10 0.12 1.87 16 20 H 0.15 0.52 7.74 -2.39 -0.02 0.50 16 21 F -0.20 -3.63 16.92 44.97 0.76 -2.87 16 22 C -0.15 -2.32 5.01 -19.87 -0.10 -2.42 16 23 C -0.10 -0.99 9.67 22.27 0.22 -0.77 16 24 C -0.13 -1.25 10.05 22.27 0.22 -1.02 16 25 C -0.11 -1.26 10.05 22.27 0.22 -1.03 16 26 C -0.14 -2.16 10.05 22.27 0.22 -1.94 16 27 C -0.10 -1.88 8.57 22.27 0.19 -1.69 16 28 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 29 H 0.37 20.92 7.67 -92.71 -0.71 20.21 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.42 1.94 8.36 -92.71 -0.78 1.16 16 43 H 0.16 0.50 7.95 -2.91 -0.02 0.48 16 44 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 45 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 46 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 47 H 0.11 2.49 7.40 -2.91 -0.02 2.47 16 Total: -1.00 -78.04 397.41 2.71 -75.33 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.53 Total: 22.90 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.70 Total: -14.99 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -4.21 Total: -113.47 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.05 Total: -15.57 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.76 Total: -2.87 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -78.04 2.71 -75.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179696004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.904 kcal (2) G-P(sol) polarization free energy of solvation -78.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds