Wall clock time and date at job start Sat Apr 11 2020 00:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35673 * 116.99899 * 2 1 4 4 C 1.39487 * 120.00804 * 180.02562 * 3 2 1 5 5 N 1.31958 * 120.11184 * 179.97438 * 4 3 2 6 6 C 1.32194 * 120.13961 * 359.97438 * 5 4 3 7 7 C 1.39238 * 120.02177 * 0.02562 * 6 5 4 8 8 C 1.48137 * 120.04994 * 179.97438 * 7 6 5 9 9 O 1.21517 * 120.00460 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99580 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00097 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47559 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47471 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47117 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46742 * 180.02562 * 14 13 12 16 16 C 1.53010 * 109.46977 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47048 * 180.02562 * 16 15 14 18 18 C 1.36945 * 119.99864 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99560 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99810 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00102 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99809 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47176 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47485 * 119.99759 * 22 20 18 25 25 H 1.48496 * 109.47298 * 239.99750 * 22 20 18 26 26 N 1.32163 * 120.00927 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.47325 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47521 * 300.00156 * 1 2 3 29 29 H 1.09005 * 109.46936 * 60.00093 * 1 2 3 30 30 H 1.07997 * 119.94990 * 359.97257 * 4 3 2 31 31 H 1.08004 * 119.98496 * 180.02562 * 6 5 4 32 32 H 0.97005 * 120.00156 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.46968 * 300.00095 * 11 10 8 34 34 H 1.09004 * 109.47001 * 59.99710 * 11 10 8 35 35 H 1.08998 * 109.46654 * 299.99906 * 12 11 10 36 36 H 1.09000 * 109.47079 * 59.99119 * 12 11 10 37 37 H 1.09003 * 109.47204 * 300.00233 * 13 12 11 38 38 H 1.09004 * 109.46853 * 59.99902 * 13 12 11 39 39 H 1.08998 * 109.47157 * 300.00233 * 14 13 12 40 40 H 1.09000 * 109.46573 * 60.00551 * 14 13 12 41 41 H 1.08998 * 109.47482 * 300.00031 * 15 14 13 42 42 H 1.08995 * 109.47783 * 60.00603 * 15 14 13 43 43 H 1.08998 * 109.46711 * 300.00100 * 16 15 14 44 44 H 1.09000 * 109.46785 * 60.00274 * 16 15 14 45 45 H 0.96996 * 120.00440 * 359.97438 * 17 16 15 46 46 H 0.97001 * 119.99493 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4379 1.2821 -0.0005 5 7 4.0390 2.4568 -0.0011 6 6 3.3238 3.5685 -0.0016 7 6 1.9330 3.5020 -0.0010 8 6 1.1308 4.7474 -0.0010 9 8 1.6864 5.8281 -0.0020 10 7 -0.2154 4.6818 0.0000 11 6 -1.0088 5.9133 -0.0006 12 6 -2.4976 5.5610 0.0002 13 6 -3.3262 6.8472 0.0003 14 6 -4.8150 6.4947 0.0004 15 6 -5.6435 7.7809 -0.0002 16 6 -7.1325 7.4285 0.0006 17 7 -7.9258 8.6601 -0.0006 18 6 -9.2936 8.5935 0.0003 19 1 -9.7874 7.6329 0.0015 20 6 -10.0453 9.7604 -0.0013 21 7 -9.4434 10.9309 -0.0033 22 14 -11.9110 9.6695 -0.0008 23 1 -12.3373 8.2470 0.0009 24 1 -12.4393 10.3465 1.2108 25 1 -12.4398 10.3428 -1.2141 26 7 1.3253 2.3174 -0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0254 0.3759 -0.0005 31 1 3.8184 4.5286 -0.0024 32 1 -0.6590 3.8191 0.0004 33 1 -0.7729 6.4979 0.8887 34 1 -0.7742 6.4963 -0.8913 35 1 -2.7331 4.9767 -0.8893 36 1 -2.7325 4.9777 0.8906 37 1 -3.0906 7.4311 0.8900 38 1 -3.0914 7.4306 -0.8900 39 1 -5.0503 5.9109 -0.8895 40 1 -5.0501 5.9111 0.8905 41 1 -5.4084 8.3651 0.8895 42 1 -5.4085 8.3642 -0.8904 43 1 -7.3679 6.8442 -0.8889 44 1 -7.3673 6.8455 0.8911 45 1 -7.4823 9.5227 -0.0013 46 1 -9.9687 11.7463 -0.0049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179753688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:12 Heat of formation + Delta-G solvation = -32.893391 kcal Electronic energy + Delta-G solvation = -25069.451041 eV Core-core repulsion = 21187.515745 eV Total energy + Delta-G solvation = -3881.935296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06783 -40.02582 -38.90520 -36.91133 -35.54592 -34.92464 -33.92418 -32.05590 -31.69224 -30.02196 -28.29722 -27.29002 -25.79356 -24.46914 -23.91834 -22.38155 -21.65287 -20.96380 -20.67563 -19.14498 -18.92770 -17.44245 -17.16123 -16.98893 -16.95838 -16.33151 -16.27236 -15.52057 -15.16650 -14.73914 -14.73638 -14.49385 -14.15084 -13.66254 -13.50492 -13.41697 -13.00642 -12.78691 -12.74324 -12.40207 -12.31003 -12.22921 -11.80755 -11.59058 -11.40737 -11.25505 -11.00180 -10.94513 -10.76114 -10.72031 -10.40451 -10.27574 -9.97836 -9.89066 -9.64778 -9.59940 -9.38268 -8.85311 -6.89032 -5.74539 -3.02961 -0.26611 0.39197 2.16505 2.19548 2.46902 3.12090 3.20322 3.44195 3.49398 3.52010 3.60643 3.75887 4.32637 4.46766 4.48812 4.62718 4.65153 4.68727 4.69718 4.72635 4.91446 5.01892 5.18820 5.30713 5.35494 5.37133 5.53412 5.61286 5.65571 5.67554 5.89073 5.93158 5.97255 6.11245 6.26278 6.32169 6.32926 6.36261 6.40796 6.47693 6.85852 6.91146 6.95177 7.05106 7.60808 7.72025 8.44895 9.55593 10.15247 10.49666 11.48647 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.001449 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.098305 B =19315.239758 C =20309.380707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.296 6.296 3 C 0.276 3.724 4 C 0.070 3.930 5 N -0.404 5.404 6 C 0.067 3.933 7 C 0.074 3.926 8 C 0.572 3.428 9 O -0.521 6.521 10 N -0.707 5.707 11 C 0.114 3.886 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 N -0.476 5.476 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.410 0.590 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.831 -23.307 0.009 36.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.201 6.201 3 C 0.091 3.909 4 C -0.096 4.096 5 N -0.118 5.118 6 C -0.091 4.091 7 C -0.065 4.065 8 C 0.355 3.645 9 O -0.397 6.397 10 N -0.358 5.358 11 C -0.008 4.008 12 C -0.169 4.169 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 N -0.209 5.209 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.201 0.799 31 H 0.205 0.795 32 H 0.245 0.755 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 28.112 -22.809 0.008 36.202 hybrid contribution -1.519 -0.106 0.000 1.522 sum 26.594 -22.915 0.008 35.104 Atomic orbital electron populations 1.23044 0.76254 1.04011 1.02863 1.86308 1.23663 1.22908 1.87219 1.20969 0.91127 0.85335 0.93475 1.23308 0.89694 0.97972 0.98582 1.68677 1.37952 0.97654 1.07472 1.23698 0.90597 0.98765 0.95998 1.21947 0.93542 0.91392 0.99660 1.17621 0.82483 0.86887 0.77491 1.90847 1.71327 1.27963 1.49514 1.45896 1.05550 1.11110 1.73236 1.21590 0.90362 0.85805 1.03077 1.21833 0.92601 0.99547 1.02905 1.21519 0.95002 0.96167 1.02728 1.21496 0.93417 0.98310 1.01905 1.21731 0.95863 0.96850 1.02024 1.20658 0.88985 0.90397 0.97517 1.42404 1.03171 1.02910 1.89450 1.19309 0.82744 0.92627 1.42338 0.91162 1.24753 0.98000 0.95266 1.03170 1.69677 1.34072 0.96533 1.58024 0.86106 0.85681 0.77171 0.77188 1.20576 1.21861 1.21867 1.67925 1.40159 0.98142 1.14709 0.87753 0.91797 0.91805 0.79851 0.79530 0.75473 0.90799 0.90809 0.91181 0.91185 0.91532 0.91539 0.92095 0.92093 0.92071 0.92064 0.96603 0.96601 0.78332 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.39 101.05 1.05 1.18 16 2 O -0.30 -1.75 10.49 -18.72 -0.20 -1.95 16 3 C 0.28 1.89 7.50 -16.94 -0.13 1.76 16 4 C 0.07 0.43 11.18 -17.03 -0.19 0.24 16 5 N -0.40 -3.11 10.48 -12.58 -0.13 -3.24 16 6 C 0.07 0.53 10.76 -17.02 -0.18 0.35 16 7 C 0.07 0.62 6.75 -82.86 -0.56 0.06 16 8 C 0.57 5.52 7.81 -12.20 -0.10 5.42 16 9 O -0.52 -6.47 16.34 5.35 0.09 -6.38 16 10 N -0.71 -5.59 5.55 -61.16 -0.34 -5.92 16 11 C 0.11 0.93 5.67 -4.04 -0.02 0.90 16 12 C -0.13 -0.97 5.33 -26.73 -0.14 -1.12 16 13 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 14 C -0.11 -1.34 5.21 -26.73 -0.14 -1.48 16 15 C -0.13 -2.03 5.33 -26.73 -0.14 -2.17 16 16 C 0.15 3.13 6.26 -4.04 -0.03 3.10 16 17 N -0.74 -19.31 5.60 -59.91 -0.34 -19.65 16 18 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 N -0.48 -3.60 8.60 -9.69 -0.08 -3.69 16 27 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 0.24 8.11 -51.93 -0.42 -0.18 16 29 H 0.06 0.24 8.11 -51.93 -0.42 -0.18 16 30 H 0.18 0.57 8.06 -52.49 -0.42 0.14 16 31 H 0.19 1.30 7.64 -52.48 -0.40 0.90 16 32 H 0.41 2.59 7.82 -40.82 -0.32 2.27 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -34.22 393.29 -7.67 -41.89 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.34 Total: 4.04 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.96 Total: -0.61 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.17 Total: -60.59 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.11 Total: -8.34 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.22 -7.67 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179753688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.998 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds