Wall clock time and date at job start Sat Apr 11 2020 00:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35673 * 116.99899 * 2 1 4 4 C 1.39487 * 120.00804 * 180.02562 * 3 2 1 5 5 N 1.31958 * 120.11184 * 179.97438 * 4 3 2 6 6 C 1.32194 * 120.13961 * 359.97438 * 5 4 3 7 7 C 1.39238 * 120.02177 * 0.02562 * 6 5 4 8 8 C 1.48137 * 120.04994 * 179.97438 * 7 6 5 9 9 O 1.21517 * 120.00460 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99580 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00097 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47559 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47471 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47117 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46742 * 180.02562 * 14 13 12 16 16 C 1.53010 * 109.46977 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47048 * 180.02562 * 16 15 14 18 18 C 1.36945 * 119.99864 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99560 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99810 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00102 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99809 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47176 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47485 * 119.99759 * 22 20 18 25 25 H 1.48496 * 109.47298 * 239.99750 * 22 20 18 26 26 N 1.32163 * 120.00927 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.47325 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47521 * 300.00156 * 1 2 3 29 29 H 1.09005 * 109.46936 * 60.00093 * 1 2 3 30 30 H 1.07997 * 119.94990 * 359.97257 * 4 3 2 31 31 H 1.08004 * 119.98496 * 180.02562 * 6 5 4 32 32 H 0.97005 * 120.00156 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.46968 * 300.00095 * 11 10 8 34 34 H 1.09004 * 109.47001 * 59.99710 * 11 10 8 35 35 H 1.08998 * 109.46654 * 299.99906 * 12 11 10 36 36 H 1.09000 * 109.47079 * 59.99119 * 12 11 10 37 37 H 1.09003 * 109.47204 * 300.00233 * 13 12 11 38 38 H 1.09004 * 109.46853 * 59.99902 * 13 12 11 39 39 H 1.08998 * 109.47157 * 300.00233 * 14 13 12 40 40 H 1.09000 * 109.46573 * 60.00551 * 14 13 12 41 41 H 1.08998 * 109.47482 * 300.00031 * 15 14 13 42 42 H 1.08995 * 109.47783 * 60.00603 * 15 14 13 43 43 H 1.08998 * 109.46711 * 300.00100 * 16 15 14 44 44 H 1.09000 * 109.46785 * 60.00274 * 16 15 14 45 45 H 0.96996 * 120.00440 * 359.97438 * 17 16 15 46 46 H 0.97001 * 119.99493 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4379 1.2821 -0.0005 5 7 4.0390 2.4568 -0.0011 6 6 3.3238 3.5685 -0.0016 7 6 1.9330 3.5020 -0.0010 8 6 1.1308 4.7474 -0.0010 9 8 1.6864 5.8281 -0.0020 10 7 -0.2154 4.6818 0.0000 11 6 -1.0088 5.9133 -0.0006 12 6 -2.4976 5.5610 0.0002 13 6 -3.3262 6.8472 0.0003 14 6 -4.8150 6.4947 0.0004 15 6 -5.6435 7.7809 -0.0002 16 6 -7.1325 7.4285 0.0006 17 7 -7.9258 8.6601 -0.0006 18 6 -9.2936 8.5935 0.0003 19 1 -9.7874 7.6329 0.0015 20 6 -10.0453 9.7604 -0.0013 21 7 -9.4434 10.9309 -0.0033 22 14 -11.9110 9.6695 -0.0008 23 1 -12.3373 8.2470 0.0009 24 1 -12.4393 10.3465 1.2108 25 1 -12.4398 10.3428 -1.2141 26 7 1.3253 2.3174 -0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0254 0.3759 -0.0005 31 1 3.8184 4.5286 -0.0024 32 1 -0.6590 3.8191 0.0004 33 1 -0.7729 6.4979 0.8887 34 1 -0.7742 6.4963 -0.8913 35 1 -2.7331 4.9767 -0.8893 36 1 -2.7325 4.9777 0.8906 37 1 -3.0906 7.4311 0.8900 38 1 -3.0914 7.4306 -0.8900 39 1 -5.0503 5.9109 -0.8895 40 1 -5.0501 5.9111 0.8905 41 1 -5.4084 8.3651 0.8895 42 1 -5.4085 8.3642 -0.8904 43 1 -7.3679 6.8442 -0.8889 44 1 -7.3673 6.8455 0.8911 45 1 -7.4823 9.5227 -0.0013 46 1 -9.9687 11.7463 -0.0049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179753688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:11 Heat of formation + Delta-G solvation = -58.926438 kcal Electronic energy + Delta-G solvation = -25070.579919 eV Core-core repulsion = 21187.515745 eV Total energy + Delta-G solvation = -3883.064174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.61212 -40.70867 -39.38660 -37.93018 -36.82123 -35.67330 -35.14574 -33.49692 -32.39257 -31.46365 -28.79773 -28.36669 -26.64961 -25.56764 -24.84155 -23.68255 -22.36774 -22.13207 -21.73138 -19.72780 -19.45676 -19.11340 -17.93908 -17.69858 -17.48416 -17.06298 -17.00895 -16.65619 -16.38921 -15.57386 -15.56325 -15.41508 -15.34470 -15.06809 -14.92376 -14.13290 -14.07710 -13.92134 -13.45703 -13.20477 -13.05026 -12.97379 -12.75756 -12.68357 -12.65304 -12.40442 -12.14091 -12.11428 -12.03635 -11.82393 -11.81943 -11.76031 -11.38805 -11.34109 -10.94964 -10.49736 -10.28640 -9.91303 -9.01814 -7.97057 -5.26600 -0.83079 -0.15260 1.46545 1.47964 1.49560 1.58244 1.74362 1.83392 2.53614 2.55123 2.66341 3.08739 3.25531 3.36610 3.69636 3.74705 3.96129 4.01233 4.01760 4.24422 4.28727 4.29487 4.33357 4.40448 4.41439 4.59490 4.63086 4.75376 4.77301 4.83791 4.89706 4.96660 4.97607 5.06482 5.14235 5.25526 5.28533 5.38057 5.47680 5.54034 5.57015 5.75474 5.87537 6.25900 6.26133 6.47396 6.93431 7.31274 8.08568 8.31214 9.26965 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.001449 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.098305 B =19315.239758 C =20309.380707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.299 6.299 3 C 0.271 3.729 4 C 0.080 3.920 5 N -0.418 5.418 6 C 0.062 3.938 7 C 0.062 3.938 8 C 0.572 3.428 9 O -0.556 6.556 10 N -0.697 5.697 11 C 0.117 3.883 12 C -0.118 4.118 13 C -0.113 4.113 14 C -0.104 4.104 15 C -0.117 4.117 16 C 0.147 3.853 17 N -0.751 5.751 18 C -0.250 4.250 19 H 0.076 0.924 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.977 3.023 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.292 1.292 26 N -0.477 5.477 27 H 0.127 0.873 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.215 0.785 31 H 0.189 0.811 32 H 0.418 0.582 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.373 0.627 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.802 -25.795 0.011 37.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.203 6.203 3 C 0.085 3.915 4 C -0.086 4.086 5 N -0.132 5.132 6 C -0.094 4.094 7 C -0.077 4.077 8 C 0.355 3.645 9 O -0.434 6.434 10 N -0.347 5.347 11 C -0.006 4.006 12 C -0.156 4.156 13 C -0.151 4.151 14 C -0.142 4.142 15 C -0.155 4.155 16 C 0.021 3.979 17 N -0.394 5.394 18 C -0.382 4.382 19 H 0.094 0.906 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.219 1.219 26 N -0.211 5.211 27 H 0.145 0.855 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.232 0.768 31 H 0.206 0.794 32 H 0.256 0.744 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.204 0.796 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 28.073 -25.351 0.011 37.825 hybrid contribution -1.486 0.540 -0.001 1.581 sum 26.587 -24.811 0.010 36.366 Atomic orbital electron populations 1.23252 0.75127 1.05537 1.02793 1.86318 1.24794 1.22199 1.86976 1.21170 0.91578 0.85424 0.93312 1.23837 0.89840 0.98436 0.96440 1.68728 1.38189 0.98056 1.08225 1.23763 0.90600 0.99176 0.95899 1.21721 0.93498 0.91229 1.01272 1.17809 0.82883 0.86884 0.76886 1.90822 1.72003 1.29264 1.51360 1.45828 1.05106 1.11528 1.72283 1.21525 0.90859 0.85785 1.02444 1.21697 0.91401 0.98535 1.03978 1.21445 0.93717 0.97251 1.02658 1.21416 0.94018 0.96055 1.02698 1.21641 0.93487 0.98933 1.01427 1.20886 0.91137 0.88404 0.97444 1.42678 1.02999 1.04266 1.89450 1.19738 0.84214 0.92917 1.41307 0.90577 1.25639 1.02856 0.94956 1.03573 1.69836 1.35732 0.97095 1.59522 0.85016 0.79833 0.77796 0.76764 1.18913 1.21866 1.21876 1.67862 1.40357 0.98089 1.14792 0.85509 0.91851 0.91861 0.76841 0.79381 0.74413 0.91509 0.91519 0.90097 0.90101 0.91703 0.91714 0.91295 0.91290 0.92699 0.92692 0.96304 0.96298 0.79574 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.39 113.37 1.18 1.33 16 2 O -0.30 -2.94 10.49 -89.90 -0.94 -3.88 16 3 C 0.27 3.29 7.50 84.94 0.64 3.93 16 4 C 0.08 0.84 11.18 84.98 0.95 1.79 16 5 N -0.42 -6.06 10.48 -193.72 -2.03 -8.09 16 6 C 0.06 0.99 10.76 84.88 0.91 1.90 16 7 C 0.06 1.01 6.75 41.82 0.28 1.30 16 8 C 0.57 10.99 7.81 86.87 0.68 11.67 16 9 O -0.56 -14.17 16.34 -3.77 -0.06 -14.23 16 10 N -0.70 -10.41 5.55 -465.69 -2.58 -12.99 16 11 C 0.12 1.78 5.67 86.38 0.49 2.27 16 12 C -0.12 -1.51 5.33 30.59 0.16 -1.35 16 13 C -0.11 -1.96 5.21 30.59 0.16 -1.80 16 14 C -0.10 -2.26 5.21 30.59 0.16 -2.10 16 15 C -0.12 -3.66 5.33 30.60 0.16 -3.49 16 16 C 0.15 5.98 6.26 86.38 0.54 6.52 16 17 N -0.75 -39.70 5.60 -343.44 -1.92 -41.62 16 18 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 21 N -0.97 -60.64 13.06 21.65 0.28 -60.35 16 22 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 N -0.48 -6.73 8.60 -297.47 -2.56 -9.29 16 27 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.06 0.37 8.11 -2.39 -0.02 0.35 16 29 H 0.06 0.37 8.11 -2.38 -0.02 0.35 16 30 H 0.22 0.75 8.06 -2.91 -0.02 0.72 16 31 H 0.19 2.74 7.64 -2.91 -0.02 2.72 16 32 H 0.42 4.68 7.82 -92.70 -0.73 3.95 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.12 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.37 20.87 7.67 -92.71 -0.71 20.16 16 46 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -73.29 393.29 -0.62 -73.90 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.45 Total: 23.60 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 7.62 Total: 4.31 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -8.81 Total: -132.35 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -1.00 Total: -18.11 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -73.29 -0.62 -73.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179753688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.975 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds