Wall clock time and date at job start Sat Apr 11 2020 00:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99505 * 2 1 4 4 H 1.48506 * 109.46953 * 240.00045 * 3 2 1 5 5 H 1.48491 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46816 * 120.00505 * 3 2 1 7 7 C 1.38812 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99680 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00058 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47240 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47210 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47213 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47213 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.47212 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47242 * 179.97438 * 15 14 13 17 17 C 1.34772 * 120.00214 * 179.97438 * 16 15 14 18 18 O 1.21281 * 119.99940 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00069 * 180.02562 * 17 16 15 20 20 C 1.50706 * 109.47001 * 179.97438 * 19 17 16 21 21 C 1.38244 * 119.97491 * 269.72488 * 20 19 17 22 22 C 1.38201 * 120.02142 * 179.72306 * 21 20 19 23 23 C 1.38459 * 119.97601 * 0.57371 * 22 21 20 24 24 F 1.35094 * 120.02797 * 179.67746 * 23 22 21 25 25 C 1.38461 * 119.94519 * 359.70287 * 23 22 21 26 26 C 1.38193 * 119.98059 * 359.97438 * 25 23 22 27 27 H 0.97000 * 120.00327 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99970 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47131 * 59.99880 * 10 9 7 30 30 H 1.09004 * 109.47443 * 300.00275 * 10 9 7 31 31 H 1.09000 * 109.47531 * 59.99666 * 11 10 9 32 32 H 1.09000 * 109.46839 * 299.99759 * 11 10 9 33 33 H 1.09005 * 109.47322 * 60.00123 * 12 11 10 34 34 H 1.08991 * 109.47114 * 299.99878 * 12 11 10 35 35 H 1.09008 * 109.47046 * 60.00054 * 13 12 11 36 36 H 1.09003 * 109.47659 * 299.99877 * 13 12 11 37 37 H 1.08997 * 109.47467 * 60.00236 * 14 13 12 38 38 H 1.09000 * 109.46955 * 300.00002 * 14 13 12 39 39 H 1.08997 * 109.47040 * 59.99573 * 15 14 13 40 40 H 1.09000 * 109.46833 * 299.99674 * 15 14 13 41 41 H 0.97000 * 119.99972 * 359.97438 * 16 15 14 42 42 H 1.09000 * 109.46978 * 60.00374 * 19 17 16 43 43 H 1.09000 * 109.46976 * 299.99619 * 19 17 16 44 44 H 1.08000 * 119.98716 * 359.97438 * 21 20 19 45 45 H 1.07996 * 120.01399 * 180.25476 * 22 21 20 46 46 H 1.08009 * 120.01051 * 179.97438 * 25 23 22 47 47 H 1.07999 * 119.99486 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8291 -6.1446 -0.0005 13 6 0.8349 -7.3076 -0.0005 14 6 1.6000 -8.6326 0.0008 15 6 0.6058 -9.7956 0.0001 16 7 1.3383 -11.0643 0.0007 17 6 0.6645 -12.2315 0.0008 18 8 -0.5483 -12.2315 0.0009 19 6 1.4181 -13.5366 0.0021 20 6 0.4388 -14.6821 0.0026 21 6 -0.0060 -15.2099 1.2003 22 6 -0.9085 -16.2566 1.2019 23 6 -1.3579 -16.7844 0.0034 24 9 -2.2350 -17.8119 0.0038 25 6 -0.9072 -16.2586 -1.1956 26 6 -0.0099 -15.2076 -1.1949 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6849 -3.7144 0.8894 30 1 2.6849 -3.7145 -0.8905 31 1 0.4376 -4.7618 -0.8913 32 1 0.4371 -4.7621 0.8886 33 1 2.4551 -6.2023 0.8899 34 1 2.4563 -6.2024 -0.8900 35 1 0.2085 -7.2501 -0.8908 36 1 0.2079 -7.2497 0.8892 37 1 2.2260 -8.6899 0.8912 38 1 2.2272 -8.6908 -0.8888 39 1 -0.0200 -9.7382 -0.8905 40 1 -0.0218 -9.7376 0.8894 41 1 2.3083 -11.0642 0.0011 42 1 2.0441 -13.5938 0.8926 43 1 2.0453 -13.5947 -0.8875 44 1 0.3487 -14.8015 2.1351 45 1 -1.2590 -16.6662 2.1377 46 1 -1.2568 -16.6698 -2.1312 47 1 0.3421 -14.7975 -2.1299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180183476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:24 Heat of formation + Delta-G solvation = -99.934402 kcal Electronic energy + Delta-G solvation = -24464.344188 eV Core-core repulsion = 20559.581814 eV Total energy + Delta-G solvation = -3904.762374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.91829 -41.01835 -39.61197 -37.88590 -36.70928 -35.26545 -33.77118 -33.30867 -32.08764 -31.49477 -28.96157 -27.60494 -25.64923 -24.03343 -23.77722 -22.75851 -22.17638 -21.96288 -21.08181 -19.11505 -18.67792 -17.93693 -17.48374 -17.24919 -17.00746 -16.66730 -16.60312 -16.26654 -16.07855 -15.41121 -15.37025 -15.24144 -14.96931 -14.70215 -14.51220 -14.38441 -14.02043 -13.89191 -13.41813 -13.11842 -13.02790 -12.98342 -12.78076 -12.66006 -12.58111 -12.37796 -12.19833 -11.99801 -11.92564 -11.78784 -11.78614 -11.45946 -11.33127 -10.92174 -10.90977 -10.06314 -10.04029 -9.54717 -9.01328 -7.95969 -5.25727 0.11685 0.29323 1.46989 1.50834 1.57174 1.69757 2.20631 2.56170 2.71584 3.29669 3.37381 3.65821 3.74852 3.75976 3.96333 3.98380 4.03577 4.11992 4.24433 4.27937 4.32328 4.33048 4.37032 4.60330 4.65211 4.66173 4.66532 4.80163 4.87757 4.97106 4.99844 4.99951 5.06085 5.08366 5.16326 5.18316 5.25383 5.30667 5.37356 5.47363 5.51311 5.51515 5.54789 5.57875 5.92920 6.26448 6.63002 7.31902 7.33445 8.09277 8.31972 9.27637 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.049670 B = 0.001208 C = 0.001196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.584308 B =23180.906352 C =23407.738022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.253 4.253 8 H 0.076 0.924 9 N -0.752 5.752 10 C 0.148 3.852 11 C -0.118 4.118 12 C -0.103 4.103 13 C -0.115 4.115 14 C -0.116 4.116 15 C 0.120 3.880 16 N -0.718 5.718 17 C 0.507 3.493 18 O -0.586 6.586 19 C -0.094 4.094 20 C -0.084 4.084 21 C -0.085 4.085 22 C -0.162 4.162 23 C 0.069 3.931 24 F -0.153 7.153 25 C -0.162 4.162 26 C -0.085 4.085 27 H 0.252 0.748 28 H 0.372 0.628 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.419 0.581 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.671 -37.695 0.006 38.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.384 4.384 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.141 4.141 13 C -0.153 4.153 14 C -0.154 4.154 15 C -0.004 4.004 16 N -0.371 5.371 17 C 0.295 3.705 18 O -0.466 6.466 19 C -0.133 4.133 20 C -0.085 4.085 21 C -0.103 4.103 22 C -0.180 4.180 23 C 0.050 3.950 24 F -0.131 7.131 25 C -0.180 4.180 26 C -0.103 4.103 27 H 0.061 0.939 28 H 0.204 0.796 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.256 0.744 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.168 0.832 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.950 -37.626 0.006 38.093 hybrid contribution -0.380 0.969 0.001 1.040 sum 5.570 -36.657 0.007 37.078 Atomic orbital electron populations 1.69823 1.06754 1.26254 1.59377 1.25639 0.96450 1.01336 1.03476 0.85156 0.77192 0.78766 0.78317 1.20195 1.22009 1.20206 1.19669 0.91604 0.85537 1.41627 0.90580 1.42666 1.05678 1.01570 1.89503 1.20883 0.94430 0.85044 0.97483 1.21647 0.98103 0.94503 1.01299 1.21415 0.97916 0.91990 1.02782 1.21461 0.98101 0.93476 1.02253 1.21683 0.97718 0.91920 1.04091 1.21282 0.95092 0.82857 1.01162 1.45936 1.11342 1.04987 1.74850 1.21162 0.87821 0.86478 0.75031 1.90748 1.16415 1.88342 1.51077 1.20747 0.96938 0.87001 1.08614 1.19680 0.98796 0.96752 0.93282 1.21171 0.95510 0.94573 0.99018 1.21350 1.00137 0.99154 0.97395 1.18056 0.92666 0.88450 0.95794 1.91463 1.67148 1.56983 1.97547 1.21350 1.00198 0.99101 0.97388 1.21170 0.95544 0.94527 0.99028 0.93945 0.79618 0.96249 0.96255 0.92831 0.92842 0.91176 0.91170 0.92141 0.92148 0.89864 0.89870 0.92948 0.92944 0.74363 0.84601 0.84598 0.83228 0.83637 0.83636 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.98 46.47 29.55 68.60 2.03 48.49 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -39.76 5.60 -343.46 -1.92 -41.68 16 10 C 0.15 5.98 6.26 86.38 0.54 6.52 16 11 C -0.12 -3.70 5.33 30.59 0.16 -3.53 16 12 C -0.10 -2.22 5.21 30.59 0.16 -2.06 16 13 C -0.11 -2.02 5.21 30.59 0.16 -1.86 16 14 C -0.12 -1.36 5.33 30.60 0.16 -1.19 16 15 C 0.12 1.74 5.67 86.38 0.49 2.23 16 16 N -0.72 -7.16 5.56 -463.07 -2.57 -9.74 16 17 C 0.51 7.14 7.82 87.66 0.69 7.82 16 18 O -0.59 -14.80 16.03 -3.03 -0.05 -14.84 16 19 C -0.09 -0.53 5.83 29.10 0.17 -0.36 16 20 C -0.08 -0.99 4.37 -19.86 -0.09 -1.08 16 21 C -0.08 -1.05 9.70 22.26 0.22 -0.84 16 22 C -0.16 -2.38 10.03 22.31 0.22 -2.15 16 23 C 0.07 1.20 7.30 22.38 0.16 1.37 16 24 F -0.15 -2.98 17.27 44.97 0.78 -2.20 16 25 C -0.16 -2.38 10.03 22.31 0.22 -2.15 16 26 C -0.08 -1.05 9.70 22.26 0.22 -0.84 16 27 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.37 20.91 7.67 -92.71 -0.71 20.20 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.42 1.12 8.47 -92.71 -0.79 0.34 16 42 H 0.14 0.00 8.08 -2.39 -0.02 -0.02 16 43 H 0.14 0.00 8.09 -2.39 -0.02 -0.02 16 44 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 45 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -78.08 400.06 2.80 -75.28 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.53 Total: 20.95 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 4.79 Total: -15.87 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.21 Total: -111.81 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.05 Total: -14.84 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -78.08 2.80 -75.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180183476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.659 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds