Wall clock time and date at job start Sat Apr 11 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48504 * 109.46889 * 270.00072 * 3 2 1 5 5 H 1.48496 * 109.47010 * 29.99902 * 3 2 1 6 6 H 1.48492 * 109.47344 * 149.99845 * 3 2 1 7 7 C 1.38816 * 119.99507 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00548 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99649 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00037 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47432 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47272 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46897 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46897 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47272 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47432 * 180.02562 * 15 14 13 17 17 C 1.34780 * 120.00148 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00261 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00055 * 179.97438 * 17 16 15 20 20 C 1.50698 * 109.47172 * 179.97438 * 19 17 16 21 21 C 1.38271 * 119.98983 * 270.25578 * 20 19 17 22 22 C 1.38219 * 120.05279 * 180.25774 * 21 20 19 23 23 C 1.38227 * 120.02402 * 359.48356 * 22 21 20 24 24 C 1.38435 * 119.97416 * 0.26250 * 23 22 21 25 25 F 1.35097 * 120.02437 * 179.97438 * 24 23 22 26 26 C 1.38179 * 119.98470 * 90.00076 * 20 19 17 27 27 H 0.97005 * 119.99578 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00289 * 359.97438 * 9 7 2 29 29 H 1.09007 * 109.46983 * 59.99802 * 10 9 7 30 30 H 1.09007 * 109.47158 * 300.00055 * 10 9 7 31 31 H 1.09000 * 109.46649 * 59.99910 * 11 10 9 32 32 H 1.08994 * 109.47156 * 300.00035 * 11 10 9 33 33 H 1.09000 * 109.47176 * 60.00454 * 12 11 10 34 34 H 1.08994 * 109.47239 * 300.00206 * 12 11 10 35 35 H 1.09007 * 109.47196 * 60.00386 * 13 12 11 36 36 H 1.09003 * 109.47453 * 299.99896 * 13 12 11 37 37 H 1.09000 * 109.47176 * 60.00454 * 14 13 12 38 38 H 1.08999 * 109.47675 * 300.00371 * 14 13 12 39 39 H 1.09001 * 109.47383 * 60.00031 * 15 14 13 40 40 H 1.09007 * 109.47183 * 300.00493 * 15 14 13 41 41 H 0.97003 * 120.00273 * 0.02562 * 16 15 14 42 42 H 1.09007 * 109.46973 * 59.99753 * 19 17 16 43 43 H 1.08994 * 109.47082 * 299.99805 * 19 17 16 44 44 H 1.08000 * 119.97479 * 0.02562 * 21 20 19 45 45 H 1.08002 * 119.99072 * 179.76964 * 22 21 20 46 46 H 1.07999 * 120.01289 * 180.23490 * 23 22 21 47 47 H 1.07994 * 120.01414 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 6 6.3812 -3.5166 0.0017 13 6 7.8855 -3.2370 0.0024 14 6 8.6504 -4.5620 0.0024 15 6 10.1547 -4.2826 0.0024 16 7 10.8871 -5.5513 0.0017 17 6 12.2349 -5.5513 0.0022 18 8 12.8414 -4.5011 0.0026 19 6 12.9884 -6.8565 0.0021 20 6 14.4700 -6.5812 0.0020 21 6 15.1484 -6.4497 -1.1956 22 6 16.5083 -6.2024 -1.1973 23 6 17.1897 -6.0758 -0.0014 24 6 16.5106 -6.2020 1.1983 25 9 17.1757 -6.0789 2.3678 26 6 15.1490 -6.4550 1.1988 27 1 -0.4850 0.8401 0.0004 28 1 3.8647 -0.3623 0.0007 29 1 3.8490 -3.0424 -0.8892 30 1 3.8484 -3.0428 0.8909 31 1 5.8796 -1.6199 0.8911 32 1 5.8797 -1.6200 -0.8889 33 1 6.1180 -4.0885 -0.8881 34 1 6.1178 -4.0877 0.8918 35 1 8.1484 -2.6653 0.8924 36 1 8.1493 -2.6656 -0.8876 37 1 8.3875 -5.1334 -0.8879 38 1 8.3867 -5.1339 0.8920 39 1 10.4181 -3.7110 0.8923 40 1 10.4180 -3.7109 -0.8876 41 1 10.4021 -6.3914 0.0010 42 1 12.7252 -7.4279 -0.8881 43 1 12.7248 -7.4282 0.8918 44 1 14.6160 -6.5439 -2.1306 45 1 17.0379 -6.1036 -2.1334 46 1 18.2516 -5.8788 -0.0029 47 1 14.6183 -6.5541 2.1341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180208856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:35 Heat of formation + Delta-G solvation = -73.906357 kcal Electronic energy + Delta-G solvation = -24601.202491 eV Core-core repulsion = 20697.568777 eV Total energy + Delta-G solvation = -3903.633713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.28837 -40.48627 -39.10020 -36.95178 -35.57073 -34.08425 -33.41376 -31.95901 -31.03249 -30.46558 -28.57298 -26.88549 -24.15161 -23.23463 -22.55031 -22.01092 -21.30306 -20.86303 -20.50806 -17.87149 -17.52153 -17.36863 -16.95441 -16.66124 -16.32041 -16.19407 -15.96289 -15.48841 -14.65841 -14.59997 -14.42730 -14.21650 -13.90162 -13.78573 -13.71203 -13.23828 -13.13277 -12.71126 -12.59776 -12.52489 -12.43473 -12.16188 -11.81033 -11.66027 -11.54245 -11.47874 -11.03115 -10.87675 -10.80173 -10.46873 -10.38456 -10.22956 -10.07195 -9.57217 -9.47938 -9.43987 -9.12605 -8.87195 -7.20540 -5.75346 -3.10393 0.65632 0.74097 2.22060 2.69212 3.19316 3.38899 3.41997 3.46410 3.73749 4.04522 4.22612 4.39480 4.49583 4.53436 4.60941 4.64106 4.67189 4.71736 4.83570 4.86055 4.96150 5.13263 5.23241 5.29318 5.33477 5.47766 5.53250 5.56147 5.57218 5.62876 5.63304 5.78212 5.80447 5.84894 5.94722 6.00535 6.02556 6.11351 6.20480 6.23375 6.37121 6.41237 6.78836 6.83016 7.04997 7.80248 8.01800 8.44144 9.23782 9.96422 10.16749 11.43241 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033893 B = 0.001308 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.929027 B =21394.854178 C =21646.900961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.131 4.131 12 C -0.113 4.113 13 C -0.117 4.117 14 C -0.131 4.131 15 C 0.117 3.883 16 N -0.731 5.731 17 C 0.511 3.489 18 O -0.530 6.530 19 C -0.105 4.105 20 C -0.038 4.038 21 C -0.115 4.115 22 C -0.089 4.089 23 C -0.154 4.154 24 C 0.099 3.901 25 F -0.140 7.140 26 C -0.140 4.140 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.401 0.599 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.579 -19.516 -1.342 40.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.029 3.971 11 C -0.169 4.169 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.168 4.168 15 C -0.006 4.006 16 N -0.384 5.384 17 C 0.297 3.703 18 O -0.406 6.406 19 C -0.144 4.144 20 C -0.039 4.039 21 C -0.134 4.134 22 C -0.107 4.107 23 C -0.173 4.173 24 C 0.080 3.920 25 F -0.119 7.119 26 C -0.159 4.159 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.146 0.854 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 35.799 -18.814 -1.289 40.462 hybrid contribution 0.332 0.901 0.256 0.994 sum 36.131 -17.912 -1.033 40.340 Atomic orbital electron populations 1.69710 1.05108 1.25794 1.57756 1.24682 0.95262 0.97239 1.02095 0.86519 0.79207 0.84881 0.77778 1.21079 1.21703 1.20343 1.19095 0.80760 0.94753 1.42847 0.89267 1.42748 1.04069 1.02419 1.91179 1.20637 0.88912 0.89165 0.98387 1.21783 0.96264 0.96968 1.01863 1.21489 0.93484 0.97999 1.02164 1.21522 0.95285 0.96094 1.02584 1.21824 0.92880 0.99306 1.02836 1.21452 0.91177 0.85403 1.02592 1.46053 1.06250 1.10131 1.75939 1.20477 0.82282 0.91157 0.76385 1.90763 1.68028 1.33379 1.48383 1.20708 0.91511 0.96342 1.05881 1.19080 0.93875 0.98231 0.92684 1.21068 0.94502 1.00128 0.97655 1.20985 0.94213 0.97886 0.97620 1.21175 1.01103 1.03665 0.91375 1.17646 0.90509 1.02465 0.81405 1.91507 1.80667 1.93474 1.46238 1.20963 0.92703 1.02974 0.99217 0.93091 0.80718 0.95719 0.95758 0.92149 0.92131 0.91884 0.91898 0.91664 0.91664 0.91201 0.91204 0.91386 0.91373 0.76456 0.87327 0.87494 0.85380 0.84844 0.84741 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.83 13.97 55.49 0.78 -29.06 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.50 27.74 -169.99 -4.71 17.78 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 7 C -0.24 -7.13 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.76 -18.65 5.41 -59.91 -0.32 -18.97 16 10 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 11 C -0.13 -1.94 5.33 -26.73 -0.14 -2.09 16 12 C -0.11 -1.25 5.21 -26.73 -0.14 -1.39 16 13 C -0.12 -1.05 5.21 -26.73 -0.14 -1.19 16 14 C -0.13 -0.88 5.33 -26.73 -0.14 -1.02 16 15 C 0.12 0.89 5.67 -4.04 -0.02 0.87 16 16 N -0.73 -4.45 5.56 -60.29 -0.33 -4.79 16 17 C 0.51 4.07 7.82 -10.98 -0.09 3.98 16 18 O -0.53 -6.74 16.03 5.56 0.09 -6.65 16 19 C -0.10 -0.47 5.83 -29.04 -0.17 -0.64 16 20 C -0.04 -0.26 4.37 -104.63 -0.46 -0.72 16 21 C -0.12 -0.73 9.70 -39.58 -0.38 -1.12 16 22 C -0.09 -0.53 10.04 -39.59 -0.40 -0.93 16 23 C -0.15 -1.08 10.03 -39.51 -0.40 -1.47 16 24 C 0.10 0.84 7.30 -39.42 -0.29 0.55 16 25 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 26 C -0.14 -1.09 9.68 -39.51 -0.38 -1.47 16 27 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 28 H 0.36 8.60 5.53 -40.82 -0.23 8.38 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.40 1.23 8.47 -40.82 -0.35 0.88 16 42 H 0.11 0.22 8.09 -51.93 -0.42 -0.20 16 43 H 0.11 0.26 8.09 -51.93 -0.42 -0.16 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 45 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 46 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -36.28 396.95 -9.68 -45.97 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.77 Total: 1.94 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -3.43 Total: -10.92 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.12 Total: -52.81 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: 0.09 Total: -6.65 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.28 -9.68 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180208856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.941 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds