Wall clock time and date at job start Sat Apr 11 2020 00:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48504 * 109.46889 * 270.00072 * 3 2 1 5 5 H 1.48496 * 109.47010 * 29.99902 * 3 2 1 6 6 H 1.48492 * 109.47344 * 149.99845 * 3 2 1 7 7 C 1.38816 * 119.99507 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00548 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99649 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00037 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47432 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47272 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46897 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46897 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47272 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47432 * 180.02562 * 15 14 13 17 17 C 1.34780 * 120.00148 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00261 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00055 * 179.97438 * 17 16 15 20 20 C 1.50698 * 109.47172 * 179.97438 * 19 17 16 21 21 C 1.38271 * 119.98983 * 270.25578 * 20 19 17 22 22 C 1.38219 * 120.05279 * 180.25774 * 21 20 19 23 23 C 1.38227 * 120.02402 * 359.48356 * 22 21 20 24 24 C 1.38435 * 119.97416 * 0.26250 * 23 22 21 25 25 F 1.35097 * 120.02437 * 179.97438 * 24 23 22 26 26 C 1.38179 * 119.98470 * 90.00076 * 20 19 17 27 27 H 0.97005 * 119.99578 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00289 * 359.97438 * 9 7 2 29 29 H 1.09007 * 109.46983 * 59.99802 * 10 9 7 30 30 H 1.09007 * 109.47158 * 300.00055 * 10 9 7 31 31 H 1.09000 * 109.46649 * 59.99910 * 11 10 9 32 32 H 1.08994 * 109.47156 * 300.00035 * 11 10 9 33 33 H 1.09000 * 109.47176 * 60.00454 * 12 11 10 34 34 H 1.08994 * 109.47239 * 300.00206 * 12 11 10 35 35 H 1.09007 * 109.47196 * 60.00386 * 13 12 11 36 36 H 1.09003 * 109.47453 * 299.99896 * 13 12 11 37 37 H 1.09000 * 109.47176 * 60.00454 * 14 13 12 38 38 H 1.08999 * 109.47675 * 300.00371 * 14 13 12 39 39 H 1.09001 * 109.47383 * 60.00031 * 15 14 13 40 40 H 1.09007 * 109.47183 * 300.00493 * 15 14 13 41 41 H 0.97003 * 120.00273 * 0.02562 * 16 15 14 42 42 H 1.09007 * 109.46973 * 59.99753 * 19 17 16 43 43 H 1.08994 * 109.47082 * 299.99805 * 19 17 16 44 44 H 1.08000 * 119.97479 * 0.02562 * 21 20 19 45 45 H 1.08002 * 119.99072 * 179.76964 * 22 21 20 46 46 H 1.07999 * 120.01289 * 180.23490 * 23 22 21 47 47 H 1.07994 * 120.01414 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 6 6.3812 -3.5166 0.0017 13 6 7.8855 -3.2370 0.0024 14 6 8.6504 -4.5620 0.0024 15 6 10.1547 -4.2826 0.0024 16 7 10.8871 -5.5513 0.0017 17 6 12.2349 -5.5513 0.0022 18 8 12.8414 -4.5011 0.0026 19 6 12.9884 -6.8565 0.0021 20 6 14.4700 -6.5812 0.0020 21 6 15.1484 -6.4497 -1.1956 22 6 16.5083 -6.2024 -1.1973 23 6 17.1897 -6.0758 -0.0014 24 6 16.5106 -6.2020 1.1983 25 9 17.1757 -6.0789 2.3678 26 6 15.1490 -6.4550 1.1988 27 1 -0.4850 0.8401 0.0004 28 1 3.8647 -0.3623 0.0007 29 1 3.8490 -3.0424 -0.8892 30 1 3.8484 -3.0428 0.8909 31 1 5.8796 -1.6199 0.8911 32 1 5.8797 -1.6200 -0.8889 33 1 6.1180 -4.0885 -0.8881 34 1 6.1178 -4.0877 0.8918 35 1 8.1484 -2.6653 0.8924 36 1 8.1493 -2.6656 -0.8876 37 1 8.3875 -5.1334 -0.8879 38 1 8.3867 -5.1339 0.8920 39 1 10.4181 -3.7110 0.8923 40 1 10.4180 -3.7109 -0.8876 41 1 10.4021 -6.3914 0.0010 42 1 12.7252 -7.4279 -0.8881 43 1 12.7248 -7.4282 0.8918 44 1 14.6160 -6.5439 -2.1306 45 1 17.0379 -6.1036 -2.1334 46 1 18.2516 -5.8788 -0.0029 47 1 14.6183 -6.5541 2.1341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180208856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:34 Heat of formation + Delta-G solvation = -97.034712 kcal Electronic energy + Delta-G solvation = -24602.205411 eV Core-core repulsion = 20697.568777 eV Total energy + Delta-G solvation = -3904.636634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.92809 -41.04445 -39.62167 -37.96367 -36.81060 -35.29673 -33.97476 -33.57614 -31.87726 -31.49754 -29.31665 -27.90347 -25.51264 -23.77649 -23.61446 -22.87231 -22.23955 -22.03656 -21.13138 -19.61441 -18.40911 -17.94791 -17.48293 -17.14199 -17.02077 -16.83048 -16.61439 -16.56461 -16.29733 -15.79515 -15.45819 -14.95790 -14.89385 -14.77921 -14.41472 -14.24165 -14.09307 -14.04303 -13.47367 -13.32034 -13.10840 -13.08695 -12.91820 -12.66992 -12.53395 -12.45976 -12.08135 -12.02248 -11.88143 -11.85614 -11.79975 -11.53208 -11.33441 -10.97725 -10.96110 -10.07766 -9.93281 -9.64762 -9.31323 -8.04965 -5.38710 0.15742 0.23939 1.36953 1.40587 1.48242 1.65711 2.18933 2.47170 2.70645 3.23729 3.26449 3.57658 3.60134 3.81611 3.90399 3.99480 4.02969 4.09368 4.23187 4.24868 4.26595 4.32268 4.34043 4.50019 4.59771 4.62368 4.62775 4.78462 4.84814 4.93590 4.98041 5.01044 5.05569 5.08556 5.14590 5.16311 5.28681 5.34447 5.35216 5.47992 5.48609 5.53434 5.56256 5.73677 5.93583 6.19718 6.59218 7.06306 7.29446 7.83330 8.02421 9.16629 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033893 B = 0.001308 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.929027 B =21394.854178 C =21646.900961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.242 4.242 8 H 0.055 0.945 9 N -0.763 5.763 10 C 0.150 3.850 11 C -0.121 4.121 12 C -0.106 4.106 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.120 3.880 16 N -0.718 5.718 17 C 0.508 3.492 18 O -0.585 6.585 19 C -0.097 4.097 20 C -0.048 4.048 21 C -0.122 4.122 22 C -0.092 4.092 23 C -0.163 4.163 24 C 0.070 3.930 25 F -0.153 7.153 26 C -0.155 4.155 27 H 0.259 0.741 28 H 0.366 0.634 29 H 0.023 0.977 30 H 0.021 0.979 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.419 0.581 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.149 0.851 45 H 0.159 0.841 46 H 0.147 0.853 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.295 -20.315 -2.176 42.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.177 1.177 7 C -0.373 4.373 8 H 0.073 0.927 9 N -0.409 5.409 10 C 0.024 3.976 11 C -0.159 4.159 12 C -0.144 4.144 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.004 4.004 16 N -0.371 5.371 17 C 0.296 3.704 18 O -0.465 6.465 19 C -0.136 4.136 20 C -0.049 4.049 21 C -0.140 4.140 22 C -0.110 4.110 23 C -0.182 4.182 24 C 0.051 3.949 25 F -0.132 7.132 26 C -0.174 4.174 27 H 0.067 0.933 28 H 0.199 0.801 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.256 0.744 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.166 0.834 45 H 0.176 0.824 46 H 0.165 0.835 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 37.534 -19.682 -2.122 42.434 hybrid contribution -0.256 1.048 0.489 1.184 sum 37.278 -18.634 -1.633 41.707 Atomic orbital electron populations 1.69895 1.07176 1.26800 1.59556 1.25562 0.96195 1.01435 1.02404 0.85352 0.78605 0.79268 0.78223 1.20238 1.22005 1.17670 1.19098 0.82918 0.93571 1.41694 0.92681 1.42808 1.02556 1.04524 1.91022 1.20876 0.91668 0.87121 0.97959 1.21706 0.93003 0.99206 1.01993 1.21424 0.94282 0.95879 1.02798 1.21458 0.93953 0.97346 1.02447 1.21695 0.91606 0.98252 1.04025 1.21302 0.91936 0.85916 1.01231 1.45940 1.05903 1.10473 1.74803 1.21075 0.82612 0.91615 0.75097 1.90745 1.69126 1.35537 1.51059 1.20779 0.89399 0.94796 1.08638 1.19396 0.95213 0.97850 0.92434 1.21448 0.94866 0.99309 0.98392 1.21345 0.94459 0.96968 0.98213 1.21433 1.01942 1.03492 0.91298 1.17999 0.91205 1.04142 0.81570 1.91464 1.80959 1.93787 1.47002 1.21169 0.92672 1.03412 1.00098 0.93252 0.80111 0.95889 0.96045 0.92123 0.91899 0.91204 0.91366 0.91981 0.91794 0.89878 0.90086 0.93003 0.92692 0.74372 0.84093 0.85045 0.83359 0.82352 0.83494 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.96 13.97 21.65 0.30 -63.66 16 2 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 46.07 27.74 68.60 1.90 47.98 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.25 -10.95 6.52 99.48 0.65 -10.30 16 7 C -0.24 -14.23 10.47 84.03 0.88 -13.35 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.76 -36.77 5.41 -343.44 -1.86 -38.63 16 10 C 0.15 5.68 6.26 86.38 0.54 6.22 16 11 C -0.12 -3.33 5.33 30.59 0.16 -3.17 16 12 C -0.11 -2.06 5.21 30.59 0.16 -1.90 16 13 C -0.11 -1.75 5.21 30.59 0.16 -1.60 16 14 C -0.12 -1.25 5.33 30.59 0.16 -1.09 16 15 C 0.12 1.63 5.67 86.38 0.49 2.12 16 16 N -0.72 -7.02 5.56 -463.06 -2.57 -9.59 16 17 C 0.51 7.21 7.82 87.66 0.69 7.90 16 18 O -0.58 -14.70 16.03 -3.03 -0.05 -14.75 16 19 C -0.10 -0.61 5.83 29.10 0.17 -0.44 16 20 C -0.05 -0.60 4.37 -19.87 -0.09 -0.68 16 21 C -0.12 -1.34 9.70 22.27 0.22 -1.12 16 22 C -0.09 -0.98 10.04 22.26 0.22 -0.76 16 23 C -0.16 -2.23 10.03 22.31 0.22 -2.00 16 24 C 0.07 1.22 7.30 22.38 0.16 1.38 16 25 F -0.15 -3.06 17.27 44.97 0.78 -2.28 16 26 C -0.15 -2.40 9.68 22.31 0.22 -2.19 16 27 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 28 H 0.37 16.67 5.53 -92.71 -0.51 16.16 16 29 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.42 1.11 8.47 -92.71 -0.79 0.32 16 42 H 0.14 -0.01 8.09 -2.38 -0.02 -0.03 16 43 H 0.13 0.20 8.09 -2.39 -0.02 0.18 16 44 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 45 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 46 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 47 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -81.01 396.95 2.94 -78.07 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.40 Total: 16.96 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.83 Total: -14.09 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.13 Total: -111.88 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.05 Total: -14.75 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.90 Total: 47.98 kcal Total: -81.01 2.94 -78.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180208856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.967 kcal (2) G-P(sol) polarization free energy of solvation -81.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds