Wall clock time and date at job start Sat Apr 11 2020 00:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 117.00005 * 2 1 4 4 C 1.38897 * 119.97396 * 0.02562 * 3 2 1 5 5 C 1.38289 * 120.29757 * 179.97438 * 4 3 2 6 6 C 1.37937 * 120.23261 * 359.76597 * 5 4 3 7 7 C 1.39835 * 119.93697 * 0.49009 * 6 5 4 8 8 C 1.47188 * 120.14446 * 179.76920 * 7 6 5 9 9 O 1.21257 * 119.99854 * 179.72490 * 8 7 6 10 10 C 1.50692 * 119.99768 * 359.71874 * 8 7 6 11 11 O 1.42902 * 109.47186 * 180.02562 * 10 8 7 12 12 C 1.42900 * 114.00384 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.46955 * 30.00650 * 12 11 10 14 14 C 1.50690 * 109.47388 * 270.00269 * 12 11 10 15 15 H 1.08003 * 120.00348 * 125.22915 * 14 12 11 16 16 C 1.37881 * 120.00000 * 305.22267 * 14 12 11 17 17 N 1.31510 * 120.00130 * 6.70367 * 16 14 12 18 18 Si 1.86798 * 119.99969 * 186.70114 * 16 14 12 19 19 H 1.48498 * 109.47077 * 84.98865 * 18 16 14 20 20 H 1.48500 * 109.47306 * 204.98954 * 18 16 14 21 21 H 1.48499 * 109.47287 * 324.98921 * 18 16 14 22 22 C 1.53002 * 109.47017 * 149.99753 * 12 11 10 23 23 N 1.46897 * 109.47331 * 294.09966 * 22 12 11 24 24 C 1.46901 * 109.47000 * 64.17085 * 23 22 12 25 25 C 1.46904 * 109.47038 * 184.16607 * 23 22 12 26 26 C 1.46899 * 109.47275 * 304.16729 * 23 22 12 27 27 C 1.38388 * 119.97181 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46920 * 300.00105 * 1 2 3 29 29 H 1.08998 * 109.47260 * 59.99796 * 1 2 3 30 30 H 1.08997 * 109.47105 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.84680 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.88366 * 180.02562 * 5 4 3 33 33 H 1.08002 * 120.03036 * 180.27799 * 6 5 4 34 34 H 1.08999 * 109.47518 * 60.00426 * 10 8 7 35 35 H 1.08999 * 109.47830 * 300.00317 * 10 8 7 36 36 H 0.96994 * 120.00336 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.46955 * 54.09875 * 22 12 11 38 38 H 1.08998 * 109.47338 * 174.09709 * 22 12 11 39 39 H 1.08990 * 109.47474 * 51.73162 * 24 23 22 40 40 H 1.09001 * 109.46835 * 171.73564 * 24 23 22 41 41 H 1.09001 * 109.47065 * 291.72884 * 24 23 22 42 42 H 1.09003 * 109.46838 * 60.00216 * 25 23 22 43 43 H 1.09002 * 109.47134 * 179.97438 * 25 23 22 44 44 H 1.08994 * 109.47427 * 300.00487 * 25 23 22 45 45 H 1.09004 * 109.46733 * 60.00063 * 26 23 22 46 46 H 1.08998 * 109.46984 * 179.97438 * 26 23 22 47 47 H 1.09003 * 109.47264 * 300.00191 * 26 23 22 48 48 H 1.07997 * 120.11492 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2890 2.3755 0.0005 5 6 1.9098 3.6112 0.0011 6 6 3.2865 3.6967 0.0059 7 6 4.0582 2.5306 0.0000 8 6 5.5276 2.6166 0.0000 9 8 6.1942 1.6037 -0.0001 10 6 6.2034 3.9635 0.0001 11 8 7.6213 3.7849 -0.0005 12 6 8.3611 5.0075 -0.0011 13 1 7.7880 5.7792 0.5130 14 6 8.6205 5.4370 -1.4220 15 1 8.3233 6.4217 -1.7513 16 6 9.2375 4.5730 -2.3017 17 7 9.4805 3.3315 -1.9424 18 14 9.7282 5.1658 -4.0037 19 1 11.0592 5.8206 -3.9352 20 1 9.7932 4.0082 -4.9315 21 1 8.7222 6.1401 -4.4977 22 6 9.6942 4.7972 0.7197 23 7 9.4442 4.5168 2.1398 24 6 8.7101 3.2508 2.2671 25 6 10.7252 4.4137 2.8515 26 6 8.6474 5.6055 2.7211 27 6 3.4280 1.2827 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.2106 2.3156 0.0005 32 1 1.3147 4.5124 0.0019 33 1 3.7680 4.6635 0.0109 34 1 5.9072 4.5186 0.8901 35 1 5.9072 4.5188 -0.8898 36 1 9.9148 2.7237 -2.5611 37 1 10.2213 3.9555 0.2705 38 1 10.3024 5.6972 0.6287 39 1 9.2297 2.4718 1.7094 40 1 8.6526 2.9682 3.3183 41 1 7.7031 3.3730 1.8681 42 1 11.2699 5.3531 2.7571 43 1 10.5397 4.2060 3.9054 44 1 11.3165 3.6059 2.4202 45 1 7.6969 5.6819 2.1930 46 1 8.4615 5.3971 3.7747 47 1 9.1921 6.5449 2.6266 48 1 4.0176 0.3778 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204774883.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:49 Heat of formation + Delta-G solvation = 17.808616 kcal Electronic energy + Delta-G solvation = -28407.146780 eV Core-core repulsion = 24546.887509 eV Total energy + Delta-G solvation = -3860.259271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63019 -41.36518 -40.24201 -38.25336 -37.90136 -34.83675 -32.51590 -31.94626 -31.38019 -29.51229 -29.41976 -28.52385 -28.21357 -27.71290 -24.67192 -24.22409 -23.39671 -22.44461 -20.95433 -19.14390 -18.80087 -18.21814 -17.79871 -17.45060 -17.33463 -17.15175 -16.80802 -16.74605 -16.57470 -16.43179 -16.16375 -15.69761 -14.93028 -14.75781 -14.51032 -14.32675 -14.12600 -13.77981 -13.55376 -13.42422 -13.27953 -13.19108 -13.15351 -13.14502 -13.12600 -12.88779 -12.85632 -12.75718 -12.72752 -12.55568 -12.06393 -11.95653 -11.88444 -11.20555 -10.80368 -10.59044 -10.10933 -9.96075 -9.31241 -8.24914 -6.43992 -0.40091 0.36981 1.06607 1.33928 1.41746 1.45521 1.51117 2.16916 2.33608 2.62846 2.75094 2.92336 3.11934 3.16839 3.20918 3.64594 3.75534 3.94887 4.03326 4.04691 4.15898 4.19436 4.27519 4.28878 4.32645 4.36011 4.36389 4.42635 4.43719 4.47587 4.53056 4.62180 4.66484 4.69664 4.70825 4.80049 4.81655 4.84676 4.87025 5.06552 5.19865 5.26893 5.31564 5.34836 5.63980 5.65185 5.95366 6.34661 6.36704 6.60161 6.90823 7.38633 8.71463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.100 3.900 4 C -0.177 4.177 5 C -0.087 4.087 6 C -0.103 4.103 7 C -0.139 4.139 8 C 0.394 3.606 9 O -0.470 6.470 10 C 0.021 3.979 11 O -0.364 6.364 12 C 0.191 3.809 13 H 0.073 0.927 14 C -0.571 4.571 15 H 0.062 0.938 16 C 0.068 3.932 17 N -0.858 5.858 18 Si 0.908 3.092 19 H -0.273 1.273 20 H -0.309 1.309 21 H -0.278 1.278 22 C 0.018 3.982 23 N -0.257 5.257 24 C -0.035 4.035 25 C -0.043 4.043 26 C -0.053 4.053 27 C -0.125 4.125 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.156 0.844 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.258 0.742 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.133 0.867 41 H 0.113 0.887 42 H 0.128 0.872 43 H 0.139 0.861 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.141 0.859 47 H 0.131 0.869 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 7.728 19.835 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.055 3.945 4 C -0.196 4.196 5 C -0.105 4.105 6 C -0.122 4.122 7 C -0.140 4.140 8 C 0.272 3.728 9 O -0.345 6.345 10 C -0.056 4.056 11 O -0.284 6.284 12 C 0.135 3.865 13 H 0.091 0.909 14 C -0.610 4.610 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.492 5.492 18 Si 0.737 3.263 19 H -0.199 1.199 20 H -0.236 1.236 21 H -0.203 1.203 22 C -0.104 4.104 23 N 0.085 4.915 24 C -0.177 4.177 25 C -0.184 4.184 26 C -0.193 4.193 27 C -0.144 4.144 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.174 0.826 32 H 0.185 0.815 33 H 0.183 0.817 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.154 0.846 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.131 0.869 42 H 0.147 0.853 43 H 0.158 0.842 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.159 0.841 47 H 0.149 0.851 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.728 6.635 19.788 21.049 hybrid contribution 0.087 -0.198 -2.154 2.165 sum -2.641 6.437 17.634 18.957 Atomic orbital electron populations 1.23370 0.76095 1.05600 1.02584 1.86080 1.23760 1.27038 1.88843 1.19064 0.91910 0.85480 0.98030 1.21860 1.01639 0.91922 1.04180 1.21398 0.94585 0.98037 0.96465 1.21719 0.94150 0.97929 0.98354 1.20287 0.94439 0.93877 1.05417 1.22895 0.87871 0.91211 0.70820 1.90552 1.67842 1.40066 1.36074 1.22612 0.84916 0.94200 1.03832 1.88232 1.13634 1.32086 1.94422 1.20107 0.88208 0.84120 0.94080 0.90945 1.21597 1.41291 1.00931 0.97141 0.92020 1.25227 0.95000 0.94598 0.99165 1.69987 1.39197 1.03622 1.36406 0.86397 0.79208 0.77488 0.83208 1.19873 1.23590 1.20290 1.24079 1.02437 1.07258 0.76584 1.45982 1.15636 1.15149 1.14726 1.24179 1.01656 0.84815 1.07043 1.24190 0.83994 1.08861 1.01354 1.24302 0.99702 0.91323 1.03970 1.20629 0.92286 0.98330 1.03116 0.90989 0.91476 0.86884 0.82648 0.81519 0.81698 0.86434 0.90245 0.93286 0.87515 0.84589 0.89468 0.84910 0.86918 0.85330 0.84238 0.88003 0.87390 0.84066 0.85053 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.34 -2.33 10.49 -92.48 -0.97 -3.30 16 3 C 0.10 0.63 6.68 22.46 0.15 0.78 16 4 C -0.18 0.05 9.04 22.44 0.20 0.25 16 5 C -0.09 0.30 10.02 22.21 0.22 0.53 16 6 C -0.10 0.20 9.47 22.58 0.21 0.41 16 7 C -0.14 -0.75 5.87 -20.16 -0.12 -0.87 16 8 C 0.39 3.18 7.19 28.04 0.20 3.38 16 9 O -0.47 -8.13 16.49 16.08 0.27 -7.87 16 10 C 0.02 0.03 4.14 71.23 0.29 0.33 16 11 O -0.36 -2.17 5.45 -129.94 -0.71 -2.88 16 12 C 0.19 0.28 1.85 29.85 0.06 0.33 16 13 H 0.07 -0.50 5.54 -2.39 -0.01 -0.51 16 14 C -0.57 -8.50 8.86 25.60 0.23 -8.28 16 15 H 0.06 1.01 7.82 -2.91 -0.02 0.99 16 16 C 0.07 1.46 5.23 84.66 0.44 1.90 16 17 N -0.86 -20.68 11.24 21.45 0.24 -20.44 16 18 Si 0.91 19.95 29.54 68.60 2.03 21.97 16 19 H -0.27 -5.83 7.11 99.48 0.71 -5.12 16 20 H -0.31 -8.17 7.11 99.48 0.71 -7.46 16 21 H -0.28 -6.34 7.11 99.48 0.71 -5.64 16 22 C 0.02 -0.13 3.62 86.30 0.31 0.19 16 23 N -0.26 5.16 0.05 ******* -0.07 5.09 16 24 C -0.04 0.53 7.17 127.69 0.91 1.45 16 25 C -0.04 1.11 8.00 127.69 1.02 2.13 16 26 C -0.05 1.37 7.55 127.69 0.96 2.33 16 27 C -0.12 -1.18 9.54 22.68 0.22 -0.97 16 28 H 0.07 -0.42 7.66 -2.39 -0.02 -0.44 16 29 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 30 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.16 -0.86 6.28 -2.91 -0.02 -0.88 16 32 H 0.17 -1.69 8.06 -2.91 -0.02 -1.72 16 33 H 0.17 -1.44 7.04 -2.91 -0.02 -1.46 16 34 H 0.12 -1.18 8.02 -2.39 -0.02 -1.19 16 35 H 0.08 0.33 8.09 -2.39 -0.02 0.31 16 36 H 0.26 6.92 8.31 -92.71 -0.77 6.15 16 37 H 0.11 0.19 6.77 -2.39 -0.02 0.17 16 38 H 0.14 -1.46 8.10 -2.39 -0.02 -1.48 16 39 H 0.09 -0.64 7.97 -2.39 -0.02 -0.66 16 40 H 0.13 -3.03 8.03 -2.39 -0.02 -3.04 16 41 H 0.11 -1.14 4.93 -2.39 -0.01 -1.16 16 42 H 0.13 -3.62 8.12 -2.39 -0.02 -3.64 16 43 H 0.14 -4.32 8.08 -2.39 -0.02 -4.34 16 44 H 0.10 -2.23 8.14 -2.39 -0.02 -2.25 16 45 H 0.11 -2.55 5.89 -2.38 -0.01 -2.56 16 46 H 0.14 -4.49 8.14 -2.39 -0.02 -4.51 16 47 H 0.13 -3.76 8.14 -2.39 -0.02 -3.78 16 48 H 0.12 1.56 7.65 -2.91 -0.02 1.53 16 Total: 0.00 -54.27 381.18 8.16 -46.11 By element: Atomic # 1 Polarization: -44.58 SS G_CDS: 0.94 Total: -43.64 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 6.43 Total: 4.95 kcal Atomic # 7 Polarization: -15.52 SS G_CDS: 0.17 Total: -15.35 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.41 Total: -14.05 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: 2.03 Total: 21.97 kcal Total: -54.27 8.16 -46.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204774883.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.916 kcal (2) G-P(sol) polarization free energy of solvation -54.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds