Wall clock time and date at job start Sat Apr 11 2020 00:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35664 * 116.99969 * 2 1 4 4 C 1.39076 * 119.88546 * 180.02562 * 3 2 1 5 5 C 1.37122 * 120.11799 * 180.02562 * 4 3 2 6 6 C 1.40042 * 119.87870 * 359.97438 * 5 4 3 7 7 C 1.46856 * 120.10890 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00467 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00054 * 179.97438 * 7 6 5 10 10 O 1.42900 * 109.47211 * 179.97438 * 9 7 6 11 11 C 1.42902 * 113.99549 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47258 * 30.00164 * 11 10 9 13 13 C 1.50704 * 109.47198 * 269.99925 * 11 10 9 14 14 H 1.07996 * 120.00290 * 120.00263 * 13 11 10 15 15 C 1.37878 * 119.99816 * 300.00405 * 13 11 10 16 16 N 1.31517 * 120.00187 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99982 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47014 * 89.99931 * 17 15 13 19 19 H 1.48503 * 109.46988 * 209.99794 * 17 15 13 20 20 H 1.48496 * 109.46838 * 329.99742 * 17 15 13 21 21 C 1.52996 * 109.46938 * 149.99896 * 11 10 9 22 22 N 1.46907 * 109.47215 * 292.78851 * 21 11 10 23 23 C 1.46895 * 109.47169 * 63.52627 * 22 21 11 24 24 C 1.46899 * 109.46572 * 303.52724 * 22 21 11 25 25 C 1.46902 * 109.46973 * 183.53079 * 22 21 11 26 26 C 1.40037 * 119.77251 * 0.26733 * 6 5 4 27 27 C 1.37114 * 119.88500 * 359.47023 * 26 6 5 28 28 H 1.09006 * 109.47190 * 299.99935 * 1 2 3 29 29 H 1.09002 * 109.47702 * 59.99794 * 1 2 3 30 30 H 1.09000 * 109.47223 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.94366 * 0.02612 * 4 3 2 32 32 H 1.08004 * 120.06044 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47077 * 59.99463 * 9 7 6 34 34 H 1.09000 * 109.46651 * 300.00131 * 9 7 6 35 35 H 0.96995 * 120.00327 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.47486 * 172.78339 * 21 11 10 37 37 H 1.09001 * 109.47112 * 52.78783 * 21 11 10 38 38 H 1.09000 * 109.47167 * 289.41481 * 23 22 21 39 39 H 1.09000 * 109.47198 * 49.40962 * 23 22 21 40 40 H 1.08996 * 109.46991 * 169.40894 * 23 22 21 41 41 H 1.09007 * 109.46712 * 180.02562 * 24 22 21 42 42 H 1.09001 * 109.47368 * 300.00008 * 24 22 21 43 43 H 1.09000 * 109.47436 * 60.00027 * 24 22 21 44 44 H 1.09006 * 109.46679 * 299.99674 * 25 22 21 45 45 H 1.08992 * 109.47360 * 59.99628 * 25 22 21 46 46 H 1.08993 * 109.47060 * 179.97438 * 25 22 21 47 47 H 1.08001 * 120.05314 * 179.70244 * 26 6 5 48 48 H 1.07995 * 119.94093 * 180.25070 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4338 1.2788 -0.0005 5 6 4.0613 2.4980 0.0000 6 6 3.3009 3.6740 0.0005 7 6 3.9676 4.9825 0.0017 8 8 5.1789 5.0460 0.0026 9 6 3.1469 6.2464 0.0017 10 8 4.0174 7.3797 0.0035 11 6 3.3361 8.6358 0.0030 12 1 2.3798 8.5307 0.5154 13 6 3.0987 9.0781 -1.4180 14 1 2.0912 9.2379 -1.7726 15 6 4.1678 9.2786 -2.2652 16 7 5.3947 9.0844 -1.8332 17 14 3.8736 9.8275 -4.0264 18 1 3.8659 11.3113 -4.0877 19 1 4.9564 9.3017 -4.8961 20 1 2.5648 9.3058 -4.4953 21 6 4.1900 9.6793 0.7260 22 7 4.2776 9.3376 2.1521 23 6 4.9694 8.0509 2.3057 24 6 2.9246 9.2364 2.7152 25 6 5.0261 10.3839 2.8613 26 6 1.9026 3.5979 0.0062 27 6 1.2850 2.3737 0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0194 0.3713 -0.0014 32 1 5.1400 2.5513 0.0000 33 1 2.5173 6.2708 0.8911 34 1 2.5187 6.2717 -0.8888 35 1 6.1468 9.2259 -2.4292 36 1 3.7330 10.6627 0.6154 37 1 5.1905 9.6930 0.2936 38 1 4.3267 7.2475 1.9457 39 1 5.8933 8.0638 1.7275 40 1 5.2016 7.8866 3.3579 41 1 2.9895 8.9833 3.7735 42 1 2.4112 10.1912 2.6012 43 1 2.3691 8.4601 2.1890 44 1 6.0301 10.4590 2.4433 45 1 4.5128 11.3386 2.7473 46 1 5.0907 10.1306 3.9194 47 1 1.3117 4.5019 0.0115 48 1 0.2067 2.3140 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204796156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:48:51 Heat of formation + Delta-G solvation = 15.085232 kcal Electronic energy + Delta-G solvation = -28346.130109 eV Core-core repulsion = 24485.752743 eV Total energy + Delta-G solvation = -3860.377366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.61734 -41.39208 -40.27261 -38.29693 -37.84902 -34.90979 -32.69102 -31.77501 -31.39012 -29.51867 -29.42485 -29.01222 -27.78357 -27.67875 -24.62541 -24.31303 -23.29141 -22.42835 -20.88496 -19.33188 -18.96827 -18.21573 -17.91622 -17.63110 -17.40003 -17.09030 -16.77919 -16.74197 -16.46716 -16.38527 -15.92378 -15.44106 -14.91252 -14.71914 -14.49801 -14.33158 -14.12341 -13.84742 -13.69338 -13.53665 -13.37756 -13.21490 -13.17100 -13.14094 -13.11826 -12.91879 -12.86473 -12.81807 -12.69484 -12.55820 -12.04744 -11.92524 -11.83998 -11.20709 -10.80542 -10.54080 -10.18304 -10.02172 -9.32088 -8.30193 -6.46894 -0.31137 0.31086 1.07890 1.33115 1.44144 1.45028 1.50164 2.24633 2.31598 2.54812 2.74879 2.93072 3.12838 3.18172 3.21195 3.67103 3.68735 3.83130 4.03308 4.09467 4.19543 4.25939 4.26637 4.31192 4.33137 4.36335 4.39027 4.43071 4.45808 4.49488 4.53462 4.57481 4.66509 4.69357 4.74297 4.80274 4.82848 4.85563 4.95455 5.04323 5.09695 5.20746 5.35417 5.37059 5.60223 5.63704 5.94227 6.30413 6.37687 6.65027 6.88659 7.36172 8.67993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.152 3.848 4 C -0.179 4.179 5 C -0.032 4.032 6 C -0.223 4.223 7 C 0.398 3.602 8 O -0.479 6.479 9 C 0.018 3.982 10 O -0.372 6.372 11 C 0.192 3.808 12 H 0.072 0.928 13 C -0.568 4.568 14 H 0.061 0.939 15 C 0.068 3.932 16 N -0.867 5.867 17 Si 0.911 3.089 18 H -0.276 1.276 19 H -0.306 1.306 20 H -0.277 1.277 21 C 0.014 3.986 22 N -0.258 5.258 23 C -0.031 4.031 24 C -0.053 4.053 25 C -0.042 4.042 26 C -0.021 4.021 27 C -0.221 4.221 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.261 0.739 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.126 0.874 46 H 0.140 0.860 47 H 0.166 0.834 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.183 1.751 19.547 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.245 6.245 3 C 0.105 3.895 4 C -0.198 4.198 5 C -0.051 4.051 6 C -0.224 4.224 7 C 0.278 3.722 8 O -0.356 6.356 9 C -0.059 4.059 10 O -0.292 6.292 11 C 0.136 3.864 12 H 0.089 0.911 13 C -0.606 4.606 14 H 0.079 0.921 15 C -0.139 4.139 16 N -0.503 5.503 17 Si 0.741 3.259 18 H -0.201 1.201 19 H -0.233 1.233 20 H -0.202 1.202 21 C -0.106 4.106 22 N 0.084 4.916 23 C -0.173 4.173 24 C -0.193 4.193 25 C -0.183 4.183 26 C -0.039 4.039 27 C -0.239 4.239 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.145 0.855 46 H 0.158 0.842 47 H 0.184 0.816 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.084 1.595 19.504 20.812 hybrid contribution -0.033 0.130 -2.145 2.149 sum -7.117 1.725 17.359 18.840 Atomic orbital electron populations 1.23451 0.75796 1.05855 1.02890 1.86040 1.24046 1.26989 1.87380 1.19625 0.92500 0.85178 0.92163 1.20425 0.92094 0.98931 1.08351 1.21123 1.00524 0.91028 0.92403 1.20392 0.95256 0.93971 1.12782 1.22667 0.88860 0.90070 0.70643 1.90549 1.17937 1.89885 1.37229 1.22664 0.93724 0.85870 1.03658 1.88214 1.33115 1.13238 1.94628 1.20089 0.91086 0.81190 0.94037 0.91086 1.21628 0.92810 1.48291 0.97898 0.92122 1.25189 0.95526 0.93734 0.99408 1.69772 0.98197 1.45903 1.36401 0.86313 0.77312 0.78788 0.83515 1.20125 1.23297 1.20202 1.24128 1.08565 1.01886 0.76064 1.46000 1.15623 1.15100 1.14869 1.24108 1.01483 0.84768 1.06921 1.24296 0.81399 1.09295 1.04336 1.24172 1.00159 0.92580 1.01392 1.21426 0.92348 0.98971 0.91186 1.21439 1.01849 0.91419 1.09178 0.90716 0.91259 0.86634 0.84267 0.85155 0.86716 0.90397 0.92930 0.85223 0.86258 0.87203 0.89421 0.84820 0.84012 0.85282 0.87392 0.87981 0.85550 0.84151 0.81616 0.81990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.80 113.37 1.11 1.03 16 2 O -0.33 -0.74 10.48 -89.81 -0.94 -1.68 16 3 C 0.15 0.40 6.70 22.67 0.15 0.55 16 4 C -0.18 -0.81 9.95 22.21 0.22 -0.59 16 5 C -0.03 -0.19 9.57 22.44 0.21 0.02 16 6 C -0.22 -0.86 5.87 -20.15 -0.12 -0.98 16 7 C 0.40 2.71 7.18 27.95 0.20 2.91 16 8 O -0.48 -7.49 16.48 15.96 0.26 -7.23 16 9 C 0.02 0.02 4.11 71.24 0.29 0.31 16 10 O -0.37 -2.18 6.04 -129.94 -0.79 -2.96 16 11 C 0.19 0.35 1.86 29.85 0.06 0.40 16 12 H 0.07 -0.46 5.48 -2.39 -0.01 -0.47 16 13 C -0.57 -8.59 8.89 25.60 0.23 -8.36 16 14 H 0.06 1.01 7.81 -2.91 -0.02 0.99 16 15 C 0.07 1.45 5.24 84.65 0.44 1.90 16 16 N -0.87 -19.89 10.96 21.45 0.24 -19.66 16 17 Si 0.91 19.95 29.54 68.60 2.03 21.97 16 18 H -0.28 -5.96 7.11 99.48 0.71 -5.25 16 19 H -0.31 -7.98 7.11 99.48 0.71 -7.27 16 20 H -0.28 -6.28 7.11 99.48 0.71 -5.57 16 21 C 0.01 -0.09 3.49 86.30 0.30 0.21 16 22 N -0.26 5.08 0.05 ******* -0.07 5.01 16 23 C -0.03 0.48 7.10 127.69 0.91 1.38 16 24 C -0.05 1.35 7.56 127.69 0.97 2.32 16 25 C -0.04 1.06 7.99 127.69 1.02 2.08 16 26 C -0.02 0.05 9.44 22.44 0.21 0.26 16 27 C -0.22 0.43 8.99 22.21 0.20 0.63 16 28 H 0.07 -0.68 7.65 -2.38 -0.02 -0.70 16 29 H 0.07 -0.54 7.65 -2.39 -0.02 -0.56 16 30 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.14 0.41 8.06 -2.91 -0.02 0.38 16 32 H 0.13 0.92 7.64 -2.91 -0.02 0.89 16 33 H 0.12 -1.16 7.97 -2.39 -0.02 -1.18 16 34 H 0.08 0.27 8.09 -2.39 -0.02 0.25 16 35 H 0.26 6.64 8.31 -92.71 -0.77 5.87 16 36 H 0.13 -1.15 8.10 -2.39 -0.02 -1.17 16 37 H 0.12 0.34 6.14 -2.39 -0.01 0.32 16 38 H 0.11 -1.24 5.08 -2.39 -0.01 -1.25 16 39 H 0.09 -0.64 7.93 -2.39 -0.02 -0.66 16 40 H 0.13 -3.10 7.98 -2.39 -0.02 -3.12 16 41 H 0.14 -4.48 8.14 -2.38 -0.02 -4.50 16 42 H 0.13 -3.60 8.14 -2.39 -0.02 -3.62 16 43 H 0.11 -2.52 5.85 -2.39 -0.01 -2.54 16 44 H 0.10 -2.18 8.14 -2.38 -0.02 -2.20 16 45 H 0.13 -3.44 8.13 -2.39 -0.02 -3.46 16 46 H 0.14 -4.32 8.06 -2.39 -0.02 -4.34 16 47 H 0.17 -1.50 7.04 -2.91 -0.02 -1.52 16 48 H 0.16 -1.27 6.27 -2.91 -0.02 -1.28 16 Total: 0.00 -51.53 380.45 8.08 -43.46 By element: Atomic # 1 Polarization: -43.92 SS G_CDS: 0.94 Total: -42.98 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.41 Total: 4.07 kcal Atomic # 7 Polarization: -14.81 SS G_CDS: 0.17 Total: -14.65 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.46 Total: -11.88 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: 2.03 Total: 21.97 kcal Total: -51.53 8.08 -43.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204796156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.542 kcal (2) G-P(sol) polarization free energy of solvation -51.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds