Wall clock time and date at job start Sat Apr 11 2020 00:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35873 * 126.08457 * 2 1 4 4 C 1.35588 * 107.58325 * 180.02562 * 3 2 1 5 5 O 1.36229 * 126.05062 * 179.97438 * 4 3 2 6 6 C 1.42906 * 117.00024 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47172 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 N 1.46500 * 109.47150 * 295.13157 * 13 12 11 15 15 C 1.36934 * 119.99724 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99799 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00105 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46875 * 89.99764 * 19 17 15 21 21 H 1.48496 * 109.47100 * 210.00231 * 19 17 15 22 22 H 1.48499 * 109.46830 * 329.99930 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 24 24 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 25 25 C 1.40112 * 107.89544 * 0.25839 * 4 3 2 26 26 N 1.30871 * 108.35411 * 359.55987 * 25 4 3 27 27 H 1.08995 * 109.47052 * 89.99359 * 1 2 3 28 28 H 1.08996 * 109.47464 * 210.00460 * 1 2 3 29 29 H 1.09002 * 109.46695 * 329.99989 * 1 2 3 30 30 H 1.08002 * 126.20962 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46424 * 60.00015 * 6 5 4 32 32 H 1.09001 * 109.47169 * 300.00305 * 6 5 4 33 33 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 34 34 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 35 35 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 36 36 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 37 37 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 38 38 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 39 39 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 40 40 H 0.96999 * 119.99704 * 359.97438 * 14 13 12 41 41 H 0.97003 * 119.99660 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.50232 * 301.42239 * 23 12 11 43 43 H 1.09007 * 109.52628 * 181.33900 * 23 12 11 44 44 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 45 45 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 46 46 H 1.07994 * 125.82028 * 179.73722 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2652 1.0981 0.0000 4 6 3.5510 0.6678 -0.0006 5 8 4.6608 1.4579 -0.0013 6 6 5.9278 0.7969 -0.0012 7 6 7.0303 1.8242 -0.0014 8 8 6.7580 3.0060 -0.0011 9 7 8.3191 1.4296 -0.0019 10 6 9.4050 2.4192 -0.0027 11 6 10.3507 2.1188 1.1645 12 6 10.8229 0.6630 1.0674 13 6 11.7941 0.3658 2.2117 14 7 13.0015 1.1799 2.0513 15 6 14.0183 1.0834 2.9634 16 1 13.9301 0.4075 3.8011 17 6 15.1626 1.8543 2.8111 18 7 16.1398 1.7619 3.6880 19 14 15.3150 3.0240 1.3626 20 1 14.7701 4.3528 1.7399 21 1 16.7450 3.1636 0.9874 22 1 14.5510 2.4851 0.2088 23 6 9.6179 -0.2753 1.1646 24 6 8.6647 0.0015 -0.0029 25 6 3.5362 -0.7332 -0.0070 26 7 2.2898 -1.1322 -0.0006 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.9368 2.1269 0.0004 31 1 6.0119 0.1728 -0.8909 32 1 6.0125 0.1737 0.8890 33 1 9.9537 2.3589 -0.9425 34 1 8.9878 3.4195 0.1133 35 1 11.2102 2.7874 1.1177 36 1 9.8241 2.2678 2.1071 37 1 11.3274 0.5085 0.1136 38 1 11.3185 0.6046 3.1630 39 1 12.0630 -0.6903 2.1949 40 1 13.0805 1.7872 1.2991 41 1 16.9393 2.3010 3.5818 42 1 9.0983 -0.1038 2.1073 43 1 9.9574 -1.3102 1.1193 44 1 7.7592 -0.5936 0.1153 45 1 9.1509 -0.2560 -0.9439 46 1 4.4051 -1.3745 -0.0130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206050847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:06 Heat of formation + Delta-G solvation = 29.926192 kcal Electronic energy + Delta-G solvation = -26628.978582 eV Core-core repulsion = 22749.767348 eV Total energy + Delta-G solvation = -3879.211234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66145 -40.41813 -38.47893 -37.48099 -35.17008 -33.38517 -32.94655 -31.55093 -30.92329 -30.36186 -28.42091 -26.93996 -26.65947 -23.79850 -23.27788 -21.89333 -21.58641 -21.32896 -20.35793 -19.12150 -18.56370 -17.68092 -17.07326 -16.71626 -16.31277 -15.81442 -15.74731 -14.84495 -14.78629 -14.75754 -14.61044 -14.49980 -14.09951 -13.71883 -13.52125 -13.36906 -13.11927 -12.99456 -12.89868 -12.63344 -12.54176 -12.30486 -11.98451 -11.53584 -11.44637 -11.25744 -11.09476 -10.90883 -10.58507 -10.48590 -10.32147 -10.07529 -9.88989 -9.87700 -9.58632 -8.90211 -8.79745 -8.28057 -7.23272 -5.77238 -3.12615 1.38573 1.89539 2.33989 2.39653 2.43577 3.28692 3.36278 3.38799 3.44848 4.10170 4.27872 4.35455 4.53917 4.58448 4.66545 4.67193 4.69933 4.73042 4.80378 4.89780 4.92849 5.07124 5.09325 5.20292 5.26189 5.31403 5.42589 5.54213 5.62153 5.72257 5.77126 5.80089 5.91580 5.95334 6.09689 6.17727 6.34981 6.45823 6.49379 6.65202 6.77374 7.00224 7.15687 7.20573 7.94836 7.99139 8.41846 9.21060 9.93384 10.13135 11.41248 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.002042 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.285307 B =13708.012635 C =14147.005764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.370 5.370 3 C 0.025 3.975 4 C -0.028 4.028 5 O -0.278 6.278 6 C 0.050 3.950 7 C 0.518 3.482 8 O -0.521 6.521 9 N -0.606 5.606 10 C 0.112 3.888 11 C -0.126 4.126 12 C -0.099 4.099 13 C 0.163 3.837 14 N -0.755 5.755 15 C -0.244 4.244 16 H 0.089 0.911 17 C 0.004 3.996 18 N -0.934 5.934 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.127 4.127 24 C 0.105 3.895 25 C -0.006 4.006 26 N -0.272 5.272 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.183 0.817 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.626 -5.607 -10.884 32.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.159 5.159 3 C -0.119 4.119 4 C -0.083 4.083 5 O -0.190 6.190 6 C -0.029 4.029 7 C 0.304 3.696 8 O -0.397 6.397 9 N -0.341 5.341 10 C -0.010 4.010 11 C -0.165 4.165 12 C -0.118 4.118 13 C 0.035 3.965 14 N -0.401 5.401 15 C -0.374 4.374 16 H 0.107 0.893 17 C -0.192 4.192 18 N -0.582 5.582 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.166 4.166 24 C -0.018 4.018 25 C -0.192 4.192 26 N -0.096 5.096 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.200 0.800 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -31.542 -5.786 -10.677 33.799 hybrid contribution 1.032 1.226 -0.939 1.857 sum -30.510 -4.560 -11.615 32.963 Atomic orbital electron populations 1.21866 0.73196 1.04719 1.03542 1.48263 1.06578 1.03012 1.58028 1.21554 0.88681 0.93756 1.07871 1.18661 0.87554 0.89408 1.12668 1.86103 1.10600 1.31171 1.91113 1.22402 0.82442 0.94686 1.03380 1.19966 0.83111 0.89442 0.77052 1.90737 1.82587 1.17848 1.48492 1.48045 1.04965 1.07833 1.73302 1.21724 0.87266 0.92877 0.99102 1.22008 0.99027 0.97337 0.98084 1.21422 0.95409 0.94278 1.00661 1.20644 0.86483 0.94564 0.94771 1.42718 1.17210 1.49671 1.30508 1.19062 0.94011 1.20427 1.03910 0.89281 1.24679 0.96474 0.99846 0.98202 1.69704 1.07776 1.44038 1.36714 0.86558 0.76996 0.81797 0.83245 1.21006 1.21731 1.20359 1.21917 0.96146 1.00372 0.98145 1.21874 0.99652 0.80344 0.99932 1.24061 0.96264 0.93875 1.04981 1.77275 1.00954 1.08732 1.22621 0.90592 0.89112 0.89199 0.79956 0.89425 0.89257 0.91293 0.88968 0.89961 0.91291 0.90931 0.95548 0.95533 0.80673 0.93074 0.91154 0.90144 0.90146 0.90705 0.79679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.37 11.48 59.84 0.69 1.06 16 2 N -0.37 -2.98 4.04 -67.85 -0.27 -3.25 16 3 C 0.03 0.22 11.56 -16.71 -0.19 0.02 16 4 C -0.03 -0.29 6.96 -39.83 -0.28 -0.56 16 5 O -0.28 -3.28 9.76 -40.38 -0.39 -3.67 16 6 C 0.05 0.45 3.91 36.00 0.14 0.59 16 7 C 0.52 6.43 7.77 -10.99 -0.09 6.34 16 8 O -0.52 -8.75 15.91 -14.35 -0.23 -8.98 16 9 N -0.61 -6.63 2.97 -172.74 -0.51 -7.15 16 10 C 0.11 1.37 6.42 -3.71 -0.02 1.35 16 11 C -0.13 -1.75 5.27 -26.45 -0.14 -1.89 16 12 C -0.10 -1.34 2.19 -90.42 -0.20 -1.54 16 13 C 0.16 2.96 5.65 -4.04 -0.02 2.94 16 14 N -0.76 -17.47 5.12 -59.91 -0.31 -17.78 16 15 C -0.24 -6.88 10.47 -15.06 -0.16 -7.03 16 16 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 17 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 18 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 19 Si 0.88 21.96 27.74 -169.99 -4.71 17.24 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 23 C -0.13 -1.26 5.37 -26.59 -0.14 -1.40 16 24 C 0.10 0.84 6.34 -3.68 -0.02 0.82 16 25 C -0.01 -0.05 11.07 -17.26 -0.19 -0.24 16 26 N -0.27 -2.71 12.57 30.68 0.39 -2.33 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.09 0.56 7.89 -51.93 -0.41 0.15 16 32 H 0.09 0.61 7.65 -51.93 -0.40 0.22 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 35 H 0.08 1.27 7.16 -51.93 -0.37 0.90 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.36 8.09 4.71 -40.82 -0.19 7.90 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 44 H 0.08 0.42 5.93 -51.93 -0.31 0.11 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.19 1.06 7.69 -52.49 -0.40 0.66 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -37.71 374.82 -7.46 -45.17 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.11 Total: 3.21 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -0.72 Total: 0.47 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.07 Total: -59.09 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.62 Total: -12.65 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.71 -7.46 -45.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206050847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.092 kcal (2) G-P(sol) polarization free energy of solvation -37.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds