Wall clock time and date at job start Sat Apr 11 2020 00:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35873 * 126.08457 * 2 1 4 4 C 1.35588 * 107.58325 * 180.02562 * 3 2 1 5 5 O 1.36229 * 126.05062 * 179.97438 * 4 3 2 6 6 C 1.42906 * 117.00024 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47172 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 N 1.46500 * 109.47150 * 295.13157 * 13 12 11 15 15 C 1.36934 * 119.99724 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99799 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00105 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46875 * 89.99764 * 19 17 15 21 21 H 1.48496 * 109.47100 * 210.00231 * 19 17 15 22 22 H 1.48499 * 109.46830 * 329.99930 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 24 24 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 25 25 C 1.40112 * 107.89544 * 0.25839 * 4 3 2 26 26 N 1.30871 * 108.35411 * 359.55987 * 25 4 3 27 27 H 1.08995 * 109.47052 * 89.99359 * 1 2 3 28 28 H 1.08996 * 109.47464 * 210.00460 * 1 2 3 29 29 H 1.09002 * 109.46695 * 329.99989 * 1 2 3 30 30 H 1.08002 * 126.20962 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46424 * 60.00015 * 6 5 4 32 32 H 1.09001 * 109.47169 * 300.00305 * 6 5 4 33 33 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 34 34 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 35 35 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 36 36 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 37 37 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 38 38 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 39 39 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 40 40 H 0.96999 * 119.99704 * 359.97438 * 14 13 12 41 41 H 0.97003 * 119.99660 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.50232 * 301.42239 * 23 12 11 43 43 H 1.09007 * 109.52628 * 181.33900 * 23 12 11 44 44 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 45 45 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 46 46 H 1.07994 * 125.82028 * 179.73722 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2652 1.0981 0.0000 4 6 3.5510 0.6678 -0.0006 5 8 4.6608 1.4579 -0.0013 6 6 5.9278 0.7969 -0.0012 7 6 7.0303 1.8242 -0.0014 8 8 6.7580 3.0060 -0.0011 9 7 8.3191 1.4296 -0.0019 10 6 9.4050 2.4192 -0.0027 11 6 10.3507 2.1188 1.1645 12 6 10.8229 0.6630 1.0674 13 6 11.7941 0.3658 2.2117 14 7 13.0015 1.1799 2.0513 15 6 14.0183 1.0834 2.9634 16 1 13.9301 0.4075 3.8011 17 6 15.1626 1.8543 2.8111 18 7 16.1398 1.7619 3.6880 19 14 15.3150 3.0240 1.3626 20 1 14.7701 4.3528 1.7399 21 1 16.7450 3.1636 0.9874 22 1 14.5510 2.4851 0.2088 23 6 9.6179 -0.2753 1.1646 24 6 8.6647 0.0015 -0.0029 25 6 3.5362 -0.7332 -0.0070 26 7 2.2898 -1.1322 -0.0006 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.9368 2.1269 0.0004 31 1 6.0119 0.1728 -0.8909 32 1 6.0125 0.1737 0.8890 33 1 9.9537 2.3589 -0.9425 34 1 8.9878 3.4195 0.1133 35 1 11.2102 2.7874 1.1177 36 1 9.8241 2.2678 2.1071 37 1 11.3274 0.5085 0.1136 38 1 11.3185 0.6046 3.1630 39 1 12.0630 -0.6903 2.1949 40 1 13.0805 1.7872 1.2991 41 1 16.9393 2.3010 3.5818 42 1 9.0983 -0.1038 2.1073 43 1 9.9574 -1.3102 1.1193 44 1 7.7592 -0.5936 0.1153 45 1 9.1509 -0.2560 -0.9439 46 1 4.4051 -1.3745 -0.0130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206050847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:05 Heat of formation + Delta-G solvation = 3.389128 kcal Electronic energy + Delta-G solvation = -26630.129316 eV Core-core repulsion = 22749.767348 eV Total energy + Delta-G solvation = -3880.361968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25787 -41.30789 -39.33589 -38.44739 -36.69080 -34.52907 -33.85857 -32.80426 -32.35971 -31.05636 -29.29452 -28.03778 -27.28173 -25.27270 -24.24004 -23.23232 -22.33006 -22.09923 -21.39057 -20.09246 -19.57935 -19.18757 -17.96259 -17.41704 -17.13404 -16.62538 -16.46026 -16.35936 -15.96991 -15.55560 -15.48679 -15.39139 -15.24471 -15.01093 -14.59366 -14.43634 -14.16307 -13.94877 -13.68381 -13.46255 -13.40821 -13.29083 -13.16909 -13.03164 -12.79512 -12.20507 -12.17550 -12.10512 -11.88462 -11.71649 -11.67193 -11.51373 -11.37900 -10.96115 -10.81067 -10.43707 -9.71002 -9.27619 -8.90591 -8.02645 -5.35428 0.80232 1.34880 1.37104 1.41289 1.48321 1.48646 1.74897 1.76056 2.48423 2.60722 3.29018 3.37857 3.60341 3.78167 3.84088 3.86707 3.89048 4.01698 4.09993 4.18255 4.19571 4.27274 4.35537 4.44187 4.48166 4.58676 4.62040 4.73459 4.73760 4.75522 4.78693 4.88509 4.96339 5.00976 5.10973 5.15886 5.23104 5.29389 5.53494 5.53616 5.76481 5.98209 6.21698 6.27596 6.44815 6.59729 7.06810 7.09116 7.86191 8.04847 9.19015 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.002042 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.285307 B =13708.012635 C =14147.005764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.371 5.371 3 C 0.023 3.977 4 C -0.054 4.054 5 O -0.308 6.308 6 C 0.052 3.948 7 C 0.512 3.488 8 O -0.577 6.577 9 N -0.602 5.602 10 C 0.117 3.883 11 C -0.122 4.122 12 C -0.089 4.089 13 C 0.158 3.842 14 N -0.757 5.757 15 C -0.235 4.235 16 H 0.054 0.946 17 C -0.066 4.066 18 N -0.985 5.985 19 Si 0.954 3.046 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.247 1.247 23 C -0.122 4.122 24 C 0.103 3.897 25 C -0.004 4.004 26 N -0.304 5.304 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.202 0.798 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.016 0.984 39 H 0.029 0.971 40 H 0.366 0.634 41 H 0.257 0.743 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.777 -6.804 -13.175 35.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.159 5.159 3 C -0.122 4.122 4 C -0.109 4.109 5 O -0.220 6.220 6 C -0.026 4.026 7 C 0.301 3.699 8 O -0.456 6.456 9 N -0.336 5.336 10 C -0.005 4.005 11 C -0.160 4.160 12 C -0.108 4.108 13 C 0.032 3.968 14 N -0.403 5.403 15 C -0.366 4.366 16 H 0.072 0.928 17 C -0.257 4.257 18 N -0.636 5.636 19 Si 0.781 3.219 20 H -0.206 1.206 21 H -0.223 1.223 22 H -0.171 1.171 23 C -0.161 4.161 24 C -0.018 4.018 25 C -0.190 4.190 26 N -0.129 5.129 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.218 0.782 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.200 0.800 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.137 0.863 45 H 0.113 0.887 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -33.756 -7.050 -12.990 36.849 hybrid contribution 1.632 1.543 -0.118 2.249 sum -32.124 -5.507 -13.108 35.130 Atomic orbital electron populations 1.22220 0.71039 1.06124 1.04815 1.48644 1.07827 1.02378 1.57067 1.22008 0.88773 0.94774 1.06677 1.18906 0.87529 0.89992 1.14440 1.86045 1.11681 1.32663 1.91649 1.22546 0.80445 0.93563 1.06086 1.20647 0.84057 0.89418 0.75801 1.90711 1.83447 1.20330 1.51147 1.48132 1.04275 1.08928 1.72305 1.21549 0.87406 0.92666 0.98916 1.21914 0.98532 0.97363 0.98227 1.21346 0.95871 0.94860 0.98686 1.20856 0.85662 0.93794 0.96514 1.42736 1.17518 1.50454 1.29605 1.19058 0.95184 1.18797 1.03542 0.92752 1.25533 0.96255 1.02324 1.01606 1.69893 1.08624 1.45732 1.39308 0.85423 0.76876 0.79228 0.80383 1.20646 1.22272 1.17116 1.21898 0.94749 1.00352 0.99062 1.22154 1.01083 0.78700 0.99838 1.24476 0.96823 0.93715 1.03966 1.77223 1.01719 1.09986 1.23934 0.89353 0.88694 0.86884 0.78169 0.86119 0.86659 0.89733 0.90864 0.91880 0.92696 0.90117 0.96595 0.95265 0.80036 0.93399 0.91545 0.88124 0.86341 0.88724 0.77012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.49 11.48 127.77 1.47 1.96 16 2 N -0.37 -5.35 4.04 -368.58 -1.49 -6.84 16 3 C 0.02 0.36 11.56 83.45 0.96 1.32 16 4 C -0.05 -1.01 6.96 22.11 0.15 -0.85 16 5 O -0.31 -6.79 9.76 -77.12 -0.75 -7.55 16 6 C 0.05 0.78 3.91 71.24 0.28 1.06 16 7 C 0.51 11.80 7.77 87.66 0.68 12.48 16 8 O -0.58 -19.41 15.91 16.01 0.25 -19.16 16 9 N -0.60 -11.59 2.97 -818.81 -2.43 -14.02 16 10 C 0.12 2.71 6.42 86.36 0.55 3.26 16 11 C -0.12 -3.25 5.27 30.78 0.16 -3.08 16 12 C -0.09 -2.20 2.19 -10.66 -0.02 -2.22 16 13 C 0.16 5.59 5.65 86.38 0.49 6.08 16 14 N -0.76 -34.55 5.12 -343.45 -1.76 -36.31 16 15 C -0.23 -13.43 10.47 84.04 0.88 -12.55 16 16 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 17 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 18 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 19 Si 0.95 45.34 27.74 68.60 1.90 47.24 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 22 H -0.25 -10.36 6.52 99.48 0.65 -9.72 16 23 C -0.12 -1.97 5.37 30.69 0.16 -1.81 16 24 C 0.10 1.18 6.34 86.38 0.55 1.73 16 25 C 0.00 -0.07 11.07 85.29 0.94 0.88 16 26 N -0.30 -5.55 12.57 -56.85 -0.71 -6.26 16 27 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.12 1.00 7.89 -2.39 -0.02 0.98 16 32 H 0.12 1.12 7.65 -2.39 -0.02 1.10 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.00 7.00 -2.39 -0.02 1.98 16 35 H 0.06 1.91 7.16 -2.39 -0.02 1.89 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.37 15.82 4.71 -92.71 -0.44 15.38 16 41 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.12 0.52 5.93 -2.39 -0.01 0.51 16 45 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.21 1.67 7.69 -2.91 -0.02 1.64 16 Total: -1.00 -85.96 374.82 3.53 -82.43 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.49 Total: 18.93 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 7.73 Total: 4.81 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.09 Total: -126.72 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.50 Total: -26.70 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Total: -85.96 3.53 -82.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206050847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.824 kcal (2) G-P(sol) polarization free energy of solvation -85.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds