Wall clock time and date at job start Sat Apr 11 2020 00:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29029 * 124.91786 * 2 1 4 4 C 1.31780 * 117.12486 * 179.74915 * 3 2 1 5 5 C 1.33644 * 114.50172 * 0.52236 * 4 3 2 6 6 C 1.50700 * 126.04001 * 179.78621 * 5 4 3 7 7 N 1.46900 * 109.46762 * 89.71538 * 6 5 4 8 8 C 1.46902 * 111.00079 * 66.04560 * 7 6 5 9 9 C 1.50695 * 109.47380 * 281.57414 * 8 7 6 10 10 H 1.08002 * 119.99772 * 354.70092 * 9 8 7 11 11 C 1.37876 * 120.00055 * 174.69034 * 9 8 7 12 12 N 1.31517 * 119.99848 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99879 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47537 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47376 * 120.00482 * 13 11 9 16 16 H 1.48506 * 109.47397 * 240.00407 * 13 11 9 17 17 C 1.46901 * 110.99850 * 190.00167 * 7 6 5 18 18 C 1.53018 * 109.46933 * 290.03742 * 17 7 6 19 19 C 1.52991 * 109.45768 * 164.04373 * 18 17 7 20 20 C 1.52980 * 109.51125 * 315.98974 * 19 18 17 21 21 C 1.53012 * 109.46934 * 112.93997 * 20 19 18 22 22 C 1.53000 * 109.42664 * 284.04007 * 21 20 19 23 23 C 1.52990 * 109.48763 * 75.96172 * 22 21 20 24 24 C 1.52988 * 109.50835 * 247.06446 * 23 22 21 25 25 S 1.70978 * 124.91404 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47198 * 269.95949 * 1 2 3 27 27 H 1.08999 * 109.46927 * 29.95987 * 1 2 3 28 28 H 1.08995 * 109.46908 * 149.96195 * 1 2 3 29 29 H 1.08001 * 122.75181 * 180.32833 * 4 3 2 30 30 H 1.09000 * 109.47073 * 209.71556 * 6 5 4 31 31 H 1.08996 * 109.47060 * 329.71634 * 6 5 4 32 32 H 1.08996 * 109.46970 * 41.57670 * 8 7 6 33 33 H 1.09001 * 109.47015 * 161.57561 * 8 7 6 34 34 H 0.97003 * 119.99588 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.47188 * 50.03685 * 17 7 6 36 36 H 1.08995 * 109.47419 * 284.04257 * 18 17 7 37 37 H 1.09000 * 109.46942 * 44.04987 * 18 17 7 38 38 H 1.09001 * 109.46145 * 195.97667 * 19 18 17 39 39 H 1.09003 * 109.45933 * 76.00212 * 19 18 17 40 40 H 1.08996 * 109.47487 * 352.93490 * 20 19 18 41 41 H 1.09003 * 109.47165 * 232.93147 * 20 19 18 42 42 H 1.08994 * 109.47599 * 164.05572 * 21 20 19 43 43 H 1.09003 * 109.48331 * 44.02879 * 21 20 19 44 44 H 1.09001 * 109.47440 * 315.95490 * 22 21 20 45 45 H 1.09001 * 109.46551 * 195.96334 * 22 21 20 46 46 H 1.09007 * 109.46586 * 127.04948 * 23 22 21 47 47 H 1.08998 * 109.46088 * 7.07777 * 23 22 21 48 48 H 1.09010 * 109.47363 * 284.01222 * 24 23 22 49 49 H 1.09003 * 109.47797 * 164.00876 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0051 5 6 3.9355 -0.4007 -0.0014 6 6 5.3575 -0.8995 -0.0023 7 7 5.8200 -1.0626 1.3824 8 6 5.0756 -2.1301 2.0638 9 6 3.7250 -1.6109 2.4848 10 1 3.4797 -0.5684 2.3451 11 6 2.8024 -2.4667 3.0481 12 7 3.1013 -3.7361 3.2185 13 14 1.1280 -1.8232 3.5692 14 1 1.0413 -0.3709 3.2718 15 1 0.0662 -2.5451 2.8232 16 1 0.9452 -2.0422 5.0266 17 6 7.2660 -1.3174 1.4278 18 6 7.5557 -2.7130 0.8710 19 6 9.0459 -2.8327 0.5457 20 6 9.5163 -1.5644 -0.1687 21 6 10.4929 -0.8045 0.7314 22 6 9.7141 -0.0870 1.8357 23 6 9.2773 -1.1018 2.8941 24 6 7.7533 -1.2350 2.8759 25 16 2.4856 -1.4020 -0.0006 26 1 -0.3634 -0.0007 1.0277 27 1 -0.3633 0.8903 -0.5132 28 1 -0.3633 -0.8896 -0.5144 29 1 4.2532 1.7000 0.0108 30 1 5.4056 -1.8592 -0.5169 31 1 5.9947 -0.1796 -0.5158 32 1 4.9455 -2.9727 1.3848 33 1 5.6304 -2.4551 2.9440 34 1 2.4523 -4.3381 3.6151 35 1 7.7856 -0.5713 0.8266 36 1 7.2843 -3.4638 1.6130 37 1 6.9720 -2.8706 -0.0359 38 1 9.2083 -3.6952 -0.1007 39 1 9.6102 -2.9598 1.4696 40 1 8.6569 -0.9311 -0.3886 41 1 10.0155 -1.8353 -1.0990 42 1 11.0397 -0.0721 0.1376 43 1 11.1958 -1.5068 1.1797 44 1 8.8340 0.3924 1.4071 45 1 10.3505 0.6680 2.2973 46 1 9.6006 -0.7623 3.8782 47 1 9.7291 -2.0698 2.6774 48 1 7.3069 -0.3666 3.3606 49 1 7.4611 -2.1393 3.4098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207060880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:32 Heat of formation + Delta-G solvation = 32.405218 kcal Electronic energy + Delta-G solvation = -26993.235909 eV Core-core repulsion = 23660.425388 eV Total energy + Delta-G solvation = -3332.810521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00484 -40.21654 -37.59616 -34.69703 -33.76234 -33.58754 -32.15211 -30.13971 -29.03876 -26.91792 -26.44204 -25.44235 -24.44806 -23.40521 -22.15266 -21.54175 -19.95545 -19.60259 -18.70414 -18.61779 -17.12748 -16.74506 -16.20610 -15.89698 -15.65264 -15.30042 -15.03995 -15.00716 -14.92782 -14.70608 -14.28514 -14.15169 -14.03443 -13.63263 -13.53818 -13.47529 -13.10585 -12.94008 -12.84566 -12.58679 -12.49217 -12.39577 -12.13698 -11.99178 -11.97701 -11.82404 -11.61362 -11.56235 -11.32362 -11.10574 -10.71457 -10.62560 -10.51370 -10.34004 -9.58891 -9.35840 -8.90613 -8.15240 -6.08402 0.04825 0.78363 1.16068 1.29601 1.34489 1.42692 2.11329 2.37979 3.19576 3.39109 3.50598 3.74228 3.96214 4.06430 4.14026 4.25431 4.26586 4.31208 4.33431 4.35288 4.41719 4.43637 4.50879 4.59330 4.63592 4.65229 4.82960 4.90731 4.98521 4.99512 5.05606 5.10295 5.10677 5.14263 5.21229 5.24595 5.32742 5.34643 5.36724 5.42482 5.51312 5.54117 5.55194 5.68810 5.70959 5.76110 6.16273 6.40980 6.71221 6.94246 7.04337 7.47952 8.94649 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.004735 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.930867 B = 5912.351839 C = 6798.129919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 N -0.504 5.504 4 C 0.021 3.979 5 C -0.193 4.193 6 C 0.144 3.856 7 N -0.537 5.537 8 C 0.214 3.786 9 C -0.481 4.481 10 H 0.048 0.952 11 C 0.034 3.966 12 N -0.924 5.924 13 Si 0.902 3.098 14 H -0.272 1.272 15 H -0.262 1.262 16 H -0.285 1.285 17 C 0.074 3.926 18 C -0.142 4.142 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.102 4.102 25 S 0.174 5.826 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.181 0.819 30 H 0.030 0.970 31 H 0.106 0.894 32 H -0.030 1.030 33 H 0.004 0.996 34 H 0.261 0.739 35 H 0.117 0.883 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.050 0.950 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 4.575 -8.353 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.287 4.287 3 N -0.221 5.221 4 C -0.132 4.132 5 C -0.315 4.315 6 C 0.014 3.986 7 N -0.260 5.260 8 C 0.088 3.912 9 C -0.521 4.521 10 H 0.067 0.933 11 C -0.165 4.165 12 N -0.566 5.566 13 Si 0.728 3.272 14 H -0.196 1.196 15 H -0.187 1.187 16 H -0.211 1.211 17 C -0.033 4.033 18 C -0.182 4.182 19 C -0.154 4.154 20 C -0.162 4.162 21 C -0.150 4.150 22 C -0.163 4.163 23 C -0.155 4.155 24 C -0.141 4.141 25 S 0.432 5.568 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.198 0.802 30 H 0.048 0.952 31 H 0.124 0.876 32 H -0.012 1.012 33 H 0.022 0.978 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.054 4.290 -8.067 12.863 hybrid contribution -0.622 -0.312 0.653 0.954 sum 8.432 3.977 -7.414 11.912 Atomic orbital electron populations 1.20469 0.84508 1.05169 1.03286 1.27338 1.02668 0.92254 1.06424 1.66198 1.05394 1.32398 1.18102 1.21604 0.90979 0.95982 1.04628 1.25635 0.99551 0.95870 1.10470 1.20303 0.88842 0.98979 0.90472 1.62393 1.03641 1.46387 1.13549 1.19343 0.92232 0.87452 0.92144 1.21371 0.98664 0.94797 1.37305 0.93326 1.25243 1.00399 0.94747 0.96072 1.70022 1.36163 1.04333 1.46056 0.86314 0.83139 0.79189 0.78513 1.19627 1.18717 1.21077 1.22386 0.87399 0.96151 0.97361 1.22197 0.97976 0.98357 0.99638 1.21775 0.94135 0.98444 1.01044 1.21799 0.99395 0.96309 0.98715 1.21682 0.97316 0.99358 0.96641 1.21805 1.00242 0.97899 0.96366 1.21803 0.93714 1.00451 0.99495 1.21536 0.96480 1.00347 0.95687 1.84161 0.98266 1.11843 1.62553 0.91266 0.88054 0.88749 0.80203 0.95244 0.87585 1.01228 0.97797 0.92993 0.86565 0.94757 0.93552 0.92243 0.90616 0.91727 0.91174 0.90935 0.91317 0.91634 0.91291 0.91955 0.90712 0.93105 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 10.46 71.24 0.75 -1.50 16 2 C -0.01 -0.47 7.39 88.52 0.65 0.19 16 3 N -0.50 -20.37 10.54 -191.44 -2.02 -22.39 16 4 C 0.02 0.80 11.08 83.66 0.93 1.73 16 5 C -0.19 -7.60 3.98 24.64 0.10 -7.51 16 6 C 0.14 5.17 5.07 85.56 0.43 5.60 16 7 N -0.54 -21.42 4.44 -880.02 -3.91 -25.33 16 8 C 0.21 10.65 3.39 85.56 0.29 10.94 16 9 C -0.48 -25.82 5.44 25.60 0.14 -25.68 16 10 H 0.05 2.74 6.32 -2.91 -0.02 2.72 16 11 C 0.03 1.89 5.03 84.65 0.43 2.31 16 12 N -0.92 -53.54 13.29 21.45 0.28 -53.25 16 13 Si 0.90 43.65 29.21 68.60 2.00 45.66 16 14 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 15 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 16 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 17 C 0.07 2.38 1.59 44.92 0.07 2.45 16 18 C -0.14 -4.47 4.13 30.60 0.13 -4.34 16 19 C -0.12 -2.69 5.48 30.58 0.17 -2.52 16 20 C -0.13 -2.38 5.47 30.59 0.17 -2.21 16 21 C -0.11 -1.87 5.59 30.60 0.17 -1.70 16 22 C -0.13 -2.48 5.47 30.59 0.17 -2.31 16 23 C -0.12 -2.77 5.48 30.59 0.17 -2.60 16 24 C -0.10 -3.32 4.57 30.59 0.14 -3.18 16 25 S 0.17 7.20 19.40 -56.49 -1.10 6.10 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.18 5.96 8.06 -2.91 -0.02 5.93 16 30 H 0.03 1.09 6.57 -2.39 -0.02 1.08 16 31 H 0.11 3.08 7.93 -2.39 -0.02 3.06 16 32 H -0.03 -1.64 7.54 -2.39 -0.02 -1.66 16 33 H 0.00 0.22 6.09 -2.39 -0.01 0.20 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.12 3.18 2.62 -2.38 -0.01 3.18 16 36 H 0.03 1.27 7.34 -2.39 -0.02 1.26 16 37 H 0.05 1.53 6.39 -2.39 -0.02 1.52 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.70 4.69 -2.39 -0.01 1.68 16 40 H 0.06 1.34 5.47 -2.39 -0.01 1.33 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.07 7.47 -2.39 -0.02 1.05 16 44 H 0.07 1.45 5.47 -2.39 -0.01 1.44 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.07 1.68 4.69 -2.39 -0.01 1.67 16 48 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 49 H 0.03 1.26 6.62 -2.39 -0.02 1.24 16 Total: -1.00 -63.31 362.68 1.10 -62.21 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.95 Total: 17.34 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.89 Total: -30.34 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -5.64 Total: -100.97 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.00 Total: 45.66 kcal Atomic # 16 Polarization: 7.20 SS G_CDS: -1.10 Total: 6.10 kcal Total: -63.31 1.10 -62.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207060880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.614 kcal (2) G-P(sol) polarization free energy of solvation -63.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds